Wall clock time and date at job start Tue Mar 31 2020 23:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 5 5 C 1.46895 * 111.00561 * 275.00137 * 4 2 1 6 6 C 1.50699 * 109.47505 * 180.02562 * 5 4 2 7 7 O 1.21295 * 119.99607 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00043 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99820 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00168 * 359.97438 * 9 8 6 11 11 C 1.38955 * 119.99647 * 179.97438 * 9 8 6 12 12 N 1.31406 * 120.00321 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99765 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46915 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47110 * 119.99461 * 13 11 9 16 16 H 1.48498 * 109.46966 * 239.99913 * 13 11 9 17 17 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 18 18 H 1.09002 * 109.47103 * 300.00247 * 17 2 1 19 19 C 1.52997 * 109.47482 * 179.97438 * 17 2 1 20 20 N 1.46510 * 109.46966 * 59.99937 * 17 2 1 21 21 C 1.34774 * 119.99612 * 205.00152 * 20 17 2 22 22 O 1.21635 * 120.00810 * 0.02562 * 21 20 17 23 23 C 1.47256 * 119.99677 * 180.02562 * 21 20 17 24 24 C 1.36243 * 126.16965 * 179.71514 * 23 21 20 25 25 N 1.36330 * 106.89318 * 179.90248 * 24 23 21 26 26 C 1.46503 * 126.20065 * 180.13642 * 25 24 23 27 27 C 1.36174 * 107.60250 * 0.35587 * 25 24 23 28 28 O 1.35453 * 125.55562 * 179.79566 * 27 25 24 29 29 N 1.30709 * 108.89143 * 359.77843 * 27 25 24 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.00906 * 110.99706 * 38.96022 * 4 2 1 34 34 H 1.09004 * 109.46925 * 300.00216 * 5 4 2 35 35 H 1.09001 * 109.46797 * 59.99650 * 5 4 2 36 36 H 0.97001 * 120.00239 * 359.97438 * 8 6 5 37 37 H 0.96999 * 119.99987 * 180.02562 * 12 11 9 38 38 H 1.09004 * 109.47261 * 180.02562 * 19 17 2 39 39 H 1.09002 * 109.47153 * 300.00216 * 19 17 2 40 40 H 1.09001 * 109.47289 * 60.00300 * 19 17 2 41 41 H 0.96995 * 119.99596 * 25.00171 * 20 17 2 42 42 H 1.08003 * 126.54913 * 0.03241 * 24 23 21 43 43 H 1.09000 * 109.47112 * 270.28660 * 26 25 24 44 44 H 1.08994 * 109.47222 * 30.29210 * 26 25 24 45 45 H 1.09007 * 109.47003 * 150.28847 * 26 25 24 46 46 H 0.96702 * 113.99640 * 270.00673 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5885 -0.5214 3.5558 7 8 2.8688 -1.6984 3.4700 8 7 2.7286 0.1207 4.7324 9 6 3.1885 -0.5564 5.8323 10 1 3.4381 -1.6043 5.7560 11 6 3.3335 0.1058 7.0453 12 7 3.0303 1.3811 7.1381 13 14 3.9594 -0.8168 8.5441 14 1 4.2268 -2.2311 8.1787 15 1 5.2132 -0.1843 9.0268 16 1 2.9352 -0.7688 9.6183 17 6 2.0400 -0.7212 -1.2491 18 1 1.6767 -1.7489 -1.2491 19 6 3.5700 -0.7207 -1.2494 20 7 1.5517 -0.0306 -2.4454 21 6 1.4230 -0.7031 -3.6063 22 8 1.7119 -1.8834 -3.6608 23 6 0.9327 -0.0088 -4.8088 24 6 0.7603 -0.5614 -6.0422 25 7 0.2908 0.4260 -6.8565 26 6 -0.0426 0.2909 -8.2767 27 6 0.1924 1.5619 -6.1119 28 8 -0.2338 2.7656 -6.5640 29 7 0.5758 1.3014 -4.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.4495 -1.4979 1.4101 34 1 2.7588 1.0463 2.1182 35 1 1.0870 0.6164 2.5525 36 1 2.5041 1.0619 4.8011 37 1 3.1318 1.8434 7.9847 38 1 3.9334 -1.2342 -2.1397 39 1 3.9330 0.3071 -1.2497 40 1 3.9338 -1.2343 -0.3595 41 1 1.3210 0.9105 -2.4018 42 1 0.9561 -1.5863 -6.3208 43 1 0.8403 0.5045 -8.8791 44 1 -0.3807 -0.7261 -8.4754 45 1 -0.8356 0.9938 -8.5322 46 1 0.4724 3.3280 -6.9106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700418867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:14 Heat of formation + Delta-G solvation = -77.419262 kcal Electronic energy + Delta-G solvation = -28579.483865 eV Core-core repulsion = 24311.509679 eV Total energy + Delta-G solvation = -4267.974186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.21084 -40.75118 -40.10630 -38.46760 -38.12935 -36.02937 -35.43666 -35.07880 -33.25250 -31.91420 -30.65207 -30.06907 -28.16600 -27.83831 -25.82835 -25.10131 -23.62732 -22.43498 -21.70317 -21.22556 -21.00995 -19.90082 -19.52390 -18.64362 -17.72109 -17.42054 -17.27787 -16.67685 -16.57424 -16.36124 -15.90163 -15.82927 -15.49513 -15.38493 -15.18549 -15.10690 -14.88990 -14.54568 -14.23732 -13.94660 -13.57426 -13.55358 -13.50096 -13.36242 -13.10732 -12.97804 -12.91601 -12.70720 -12.53464 -12.38377 -12.21656 -12.10377 -11.66365 -11.49344 -11.48419 -11.07449 -10.83159 -10.33881 -10.13648 -9.98894 -9.56845 -9.27096 -8.44912 -5.93235 0.47467 1.06589 1.37880 1.40907 1.43040 1.57264 2.06491 2.08446 2.31726 2.44152 2.77297 3.06368 3.22667 3.58397 3.61050 3.68262 3.83713 4.04978 4.11739 4.23594 4.34282 4.37758 4.41557 4.49470 4.50858 4.60878 4.64116 4.71317 4.81333 4.87348 4.89001 4.99990 5.08144 5.22263 5.24521 5.40268 5.43409 5.55509 5.63788 5.91760 6.12238 6.38512 6.42375 6.62435 6.62687 6.74444 7.15186 7.24858 7.59157 8.14806 8.72688 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032898 B = 0.001691 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.905727 B =16552.502476 C =17054.193276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H 0.098 0.902 4 N -0.669 5.669 5 C 0.068 3.932 6 C 0.439 3.561 7 O -0.623 6.623 8 N -0.574 5.574 9 C -0.333 4.333 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.274 1.274 15 H -0.271 1.271 16 H -0.271 1.271 17 C 0.161 3.839 18 H 0.070 0.930 19 C -0.144 4.144 20 N -0.698 5.698 21 C 0.603 3.397 22 O -0.576 6.576 23 C -0.080 4.080 24 C 0.057 3.943 25 N -0.455 5.455 26 C 0.060 3.940 27 C 0.379 3.621 28 O -0.442 6.442 29 N -0.485 5.485 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.346 0.654 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.413 0.587 42 H 0.215 0.785 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 5.737 -33.796 35.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.025 4.025 3 H 0.116 0.884 4 N -0.301 5.301 5 C -0.064 4.064 6 C 0.226 3.774 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.196 1.196 16 H -0.196 1.196 17 C 0.056 3.944 18 H 0.088 0.912 19 C -0.202 4.202 20 N -0.349 5.349 21 C 0.390 3.610 22 O -0.456 6.456 23 C -0.208 4.208 24 C -0.082 4.082 25 N -0.149 5.149 26 C -0.081 4.081 27 C 0.076 3.924 28 O -0.246 6.246 29 N -0.216 5.216 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.250 0.750 42 H 0.231 0.769 43 H 0.120 0.880 44 H 0.127 0.873 45 H 0.121 0.879 46 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -7.394 4.847 -33.233 34.388 hybrid contribution -0.433 0.330 0.429 0.693 sum -7.827 5.176 -32.804 34.120 Atomic orbital electron populations 1.22456 0.95885 1.02340 1.02950 1.21721 0.93507 0.98395 0.88872 0.88410 1.59962 1.58410 1.09103 1.02647 1.21546 1.01280 0.95230 0.88347 1.20893 0.83338 0.87996 0.85156 1.90503 1.56560 1.18377 1.85454 1.41925 1.58404 1.12629 1.08161 1.19705 1.42038 0.95945 0.88568 0.90393 1.26018 0.97284 0.96620 1.01337 1.69674 1.48751 1.09640 1.28053 0.84879 0.78158 0.78022 0.77318 1.19899 1.19631 1.19612 1.20698 0.94437 0.96347 0.82926 0.91224 1.21935 0.94713 1.02079 1.01518 1.45715 1.65905 1.14608 1.08629 1.17058 0.76463 0.85158 0.82299 1.90795 1.53046 1.16427 1.85378 1.20267 1.13902 0.91474 0.95130 1.22979 0.99635 0.96085 0.89535 1.46039 1.47672 1.08678 1.12478 1.22535 1.04142 1.06668 0.74713 1.20347 1.02525 0.83792 0.85696 1.84867 1.37240 1.21369 1.81138 1.70743 1.17886 1.14889 1.18073 0.92923 0.90856 0.91898 0.83519 0.87523 0.91335 0.76944 0.91346 0.93866 0.92036 0.91462 0.75028 0.76858 0.87984 0.87266 0.87879 0.71420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.85 9.00 71.98 0.65 -3.20 16 2 C 0.09 2.06 2.22 44.91 0.10 2.16 16 3 H 0.10 2.09 7.80 -2.39 -0.02 2.07 16 4 N -0.67 -21.12 5.11 -495.60 -2.53 -23.65 16 5 C 0.07 2.31 5.96 85.56 0.51 2.82 16 6 C 0.44 20.98 7.82 87.66 0.69 21.67 16 7 O -0.62 -34.94 15.78 -3.08 -0.05 -34.99 16 8 N -0.57 -29.64 5.29 -306.98 -1.62 -31.27 16 9 C -0.33 -19.15 9.68 84.04 0.81 -18.33 16 10 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 11 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 12 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 13 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 17 C 0.16 4.16 2.34 44.99 0.11 4.26 16 18 H 0.07 2.11 7.58 -2.39 -0.02 2.09 16 19 C -0.14 -3.94 9.33 71.98 0.67 -3.27 16 20 N -0.70 -16.16 4.38 -445.95 -1.95 -18.12 16 21 C 0.60 15.69 7.77 86.61 0.67 16.36 16 22 O -0.58 -18.40 16.54 -4.14 -0.07 -18.47 16 23 C -0.08 -1.71 6.97 40.40 0.28 -1.43 16 24 C 0.06 0.85 11.29 83.53 0.94 1.79 16 25 N -0.46 -4.69 3.16 -662.74 -2.09 -6.79 16 26 C 0.06 0.03 11.11 127.77 1.42 1.44 16 27 C 0.38 5.59 9.03 179.84 1.62 7.22 16 28 O -0.44 -4.16 13.55 -87.50 -1.19 -5.34 16 29 N -0.48 -10.00 11.03 -303.15 -3.34 -13.35 16 30 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 31 H 0.07 1.43 7.45 -2.39 -0.02 1.41 16 32 H 0.06 1.33 7.45 -2.38 -0.02 1.31 16 33 H 0.35 11.77 8.17 -89.69 -0.73 11.04 16 34 H 0.11 3.22 8.06 -2.39 -0.02 3.20 16 35 H 0.07 2.03 7.44 -2.39 -0.02 2.01 16 36 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 37 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 2.11 7.60 -2.39 -0.02 2.09 16 41 H 0.41 8.36 8.10 -92.71 -0.75 7.61 16 42 H 0.21 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.10 -0.09 8.14 -2.38 -0.02 -0.11 16 46 H 0.43 -0.44 9.06 -74.06 -0.67 -1.11 16 Total: -1.00 -80.45 395.74 -3.42 -83.87 By element: Atomic # 1 Polarization: 42.81 SS G_CDS: -1.82 Total: 40.98 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 8.94 Total: 31.25 kcal Atomic # 7 Polarization: -131.58 SS G_CDS: -11.26 Total: -142.85 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -1.30 Total: -58.81 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -80.45 -3.42 -83.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700418867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.454 kcal (2) G-P(sol) polarization free energy of solvation -80.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds