Wall clock time and date at job start Tue Mar 31 2020 23:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47073 * 2 1 4 4 N 1.46895 * 109.47223 * 239.99864 * 2 1 3 5 5 C 1.46898 * 111.00209 * 84.99883 * 4 2 1 6 6 C 1.50702 * 109.47223 * 179.97438 * 5 4 2 7 7 O 1.21290 * 120.00047 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99882 * 179.97438 * 6 5 4 9 9 C 1.37101 * 119.99885 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00060 * 359.97438 * 9 8 6 11 11 C 1.38946 * 120.00124 * 180.02562 * 9 8 6 12 12 N 1.31408 * 119.99907 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00051 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46925 * 89.99885 * 13 11 9 15 15 H 1.48503 * 109.47314 * 209.99897 * 13 11 9 16 16 H 1.48496 * 109.47231 * 330.00306 * 13 11 9 17 17 C 1.52997 * 109.47025 * 119.99308 * 2 1 3 18 18 H 1.08996 * 109.47137 * 184.99693 * 17 2 1 19 19 C 1.53004 * 109.46846 * 65.00539 * 17 2 1 20 20 N 1.46496 * 109.47544 * 305.00548 * 17 2 1 21 21 C 1.34783 * 120.00090 * 205.00294 * 20 17 2 22 22 O 1.21634 * 119.99849 * 359.97438 * 21 20 17 23 23 C 1.47246 * 120.00131 * 179.97438 * 21 20 17 24 24 C 1.36244 * 126.16671 * 179.97438 * 23 21 20 25 25 N 1.36340 * 106.89228 * 180.02562 * 24 23 21 26 26 C 1.46498 * 126.20251 * 180.02562 * 25 24 23 27 27 C 1.36176 * 107.59670 * 359.97438 * 25 24 23 28 28 O 1.35457 * 125.54979 * 180.02562 * 27 25 24 29 29 N 1.30702 * 108.89832 * 0.02562 * 27 25 24 30 30 H 1.08999 * 109.46602 * 60.00233 * 1 2 3 31 31 H 1.08991 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46750 * 300.00630 * 1 2 3 33 33 H 1.00907 * 111.00061 * 321.04278 * 4 2 1 34 34 H 1.08994 * 109.47237 * 300.00014 * 5 4 2 35 35 H 1.09003 * 109.46897 * 60.00248 * 5 4 2 36 36 H 0.96999 * 120.00392 * 0.02562 * 8 6 5 37 37 H 0.97002 * 119.99959 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.46985 * 299.99375 * 19 17 2 39 39 H 1.08995 * 109.47250 * 59.99633 * 19 17 2 40 40 H 1.08999 * 109.47416 * 180.02562 * 19 17 2 41 41 H 0.97002 * 120.00250 * 24.99090 * 20 17 2 42 42 H 1.08001 * 126.55501 * 0.03611 * 24 23 21 43 43 H 1.08999 * 109.46865 * 89.99782 * 26 25 24 44 44 H 1.09006 * 109.46961 * 209.99894 * 26 25 24 45 45 H 1.09002 * 109.46987 * 329.99574 * 26 25 24 46 46 H 0.96705 * 114.00121 * 269.98436 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5886 -0.5217 -3.5557 7 8 2.8689 -1.6986 -3.4698 8 7 2.7287 0.1204 -4.7323 9 6 3.1887 -0.5567 -5.8322 10 1 3.4390 -1.6045 -5.7555 11 6 3.3336 0.1052 -7.0452 12 7 3.0295 1.3802 -7.1383 13 14 3.9610 -0.8172 -8.5435 14 1 2.8124 -1.4003 -9.2825 15 1 4.6956 0.1204 -9.4304 16 1 4.8735 -1.9051 -8.1089 17 6 2.0400 -0.7211 1.2493 18 1 3.1263 -0.6442 1.2952 19 6 1.6353 -2.1954 1.1881 20 7 1.4558 -0.1035 2.4424 21 6 2.0913 -0.1935 3.6276 22 8 3.1495 -0.7879 3.7067 23 6 1.5044 0.4277 4.8267 24 6 2.0355 0.4138 6.0812 25 7 1.1738 1.1008 6.8840 26 6 1.3358 1.3437 8.3195 27 6 0.1359 1.5212 6.1092 28 8 -0.9285 2.2394 6.5406 29 7 0.3339 1.1188 4.8815 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.4496 -1.4980 -1.4099 34 1 1.0872 0.6162 -2.5525 35 1 2.7590 1.0461 -2.1182 36 1 2.5042 1.0615 -4.8011 37 1 3.1303 1.8423 -7.9852 38 1 0.5490 -2.2723 1.1422 39 1 2.0699 -2.6549 0.3004 40 1 1.9982 -2.7091 2.0783 41 1 0.6118 0.3704 2.3794 42 1 2.9622 -0.0522 6.3823 43 1 1.8804 2.2756 8.4711 44 1 0.3545 1.4158 8.7888 45 1 1.8927 0.5203 8.7668 46 1 -1.6720 1.6989 6.8410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700418873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:21 Heat of formation + Delta-G solvation = -41.389455 kcal Electronic energy + Delta-G solvation = -28589.407302 eV Core-core repulsion = 24322.995486 eV Total energy + Delta-G solvation = -4266.411816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.62496 -39.78103 -38.40106 -37.81591 -37.15836 -34.74033 -34.32677 -33.71207 -31.26326 -30.83431 -29.55835 -28.97652 -27.71392 -26.32665 -24.81662 -24.03745 -22.99814 -21.90284 -20.50214 -19.72968 -19.29733 -18.96900 -17.99665 -17.82310 -16.85935 -16.25762 -15.94649 -15.80960 -15.48805 -15.00909 -14.90207 -14.80721 -14.55995 -14.47160 -14.07132 -13.83260 -13.69015 -13.45634 -13.22705 -13.20631 -12.77008 -12.45398 -12.25802 -12.11895 -12.07969 -11.80524 -11.50077 -11.33956 -11.00660 -10.84685 -10.81541 -10.69764 -10.35839 -10.30363 -10.17916 -10.12281 -9.46665 -9.14960 -8.88634 -8.41197 -8.00474 -7.91179 -6.37562 -3.78194 1.12365 1.67849 1.91090 2.94405 3.21217 3.28425 3.29732 3.36068 3.41581 3.95994 4.06027 4.14838 4.18112 4.43472 4.45808 4.68734 4.74663 4.84797 4.90961 5.00555 5.18505 5.26218 5.32718 5.36851 5.48932 5.50838 5.72337 5.76509 5.81380 5.90440 5.94451 6.00488 6.06496 6.08891 6.22317 6.31980 6.46628 6.56470 6.98525 7.15053 7.24903 7.57370 7.59375 7.70916 8.10860 8.19314 8.65874 9.22295 9.59045 10.10620 10.80230 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030136 B = 0.001693 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.902803 B =16537.646982 C =16891.873750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.078 3.922 3 H 0.083 0.917 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.442 3.558 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.153 3.847 18 H 0.097 0.903 19 C -0.163 4.163 20 N -0.710 5.710 21 C 0.604 3.396 22 O -0.540 6.540 23 C -0.045 4.045 24 C 0.044 3.956 25 N -0.464 5.464 26 C 0.070 3.930 27 C 0.377 3.623 28 O -0.439 6.439 29 N -0.455 5.455 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.405 0.595 42 H 0.197 0.803 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 2.729 32.088 33.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.033 4.033 3 H 0.101 0.899 4 N -0.291 5.291 5 C -0.082 4.082 6 C 0.227 3.773 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.194 1.194 17 C 0.049 3.951 18 H 0.115 0.885 19 C -0.221 4.221 20 N -0.362 5.362 21 C 0.389 3.611 22 O -0.416 6.416 23 C -0.174 4.174 24 C -0.094 4.094 25 N -0.159 5.159 26 C -0.072 4.072 27 C 0.076 3.924 28 O -0.239 6.239 29 N -0.185 5.185 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.173 0.827 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.242 0.758 42 H 0.214 0.786 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.802 2.433 31.507 32.550 hybrid contribution -1.198 0.293 -0.095 1.237 sum -9.000 2.726 31.413 32.790 Atomic orbital electron populations 1.22615 0.97339 1.02697 1.02198 1.21716 0.92702 0.98205 0.90710 0.89910 1.60024 1.57728 1.09091 1.02225 1.21705 0.99984 0.95714 0.90757 1.19809 0.85090 0.88237 0.84158 1.90524 1.55235 1.16267 1.84608 1.41860 1.57863 1.12470 1.07931 1.19709 1.39889 0.96459 0.86763 0.87911 1.25255 0.97713 0.95765 0.99244 1.69614 1.48822 1.08853 1.27090 0.85857 0.78856 0.78965 0.80603 1.20473 1.20964 1.19405 1.20917 0.99517 0.92456 0.82219 0.88452 1.22176 1.01106 0.95627 1.03165 1.46011 1.26007 1.56322 1.07833 1.16769 0.83573 0.79011 0.81749 1.90829 1.22029 1.43460 1.85331 1.20492 0.95356 1.07033 0.94510 1.22686 0.97569 0.98881 0.90245 1.45841 1.19010 1.40826 1.10199 1.22138 1.04540 1.03859 0.76696 1.20269 0.87627 0.99279 0.85208 1.84926 1.23718 1.31875 1.83410 1.70858 1.16954 1.13940 1.16768 0.92022 0.91674 0.92219 0.82686 0.93741 0.89548 0.77472 0.91925 0.92874 0.89982 0.92540 0.75782 0.78639 0.89849 0.89206 0.88876 0.74111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 8.68 37.16 0.32 -1.71 16 2 C 0.08 0.99 2.64 -67.71 -0.18 0.81 16 3 H 0.08 1.05 7.80 -51.93 -0.40 0.65 16 4 N -0.66 -10.60 5.23 -107.99 -0.56 -11.17 16 5 C 0.05 0.91 5.97 -4.98 -0.03 0.88 16 6 C 0.44 10.53 7.82 -10.99 -0.09 10.44 16 7 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 8 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 9 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 10 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 13 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 C 0.15 1.99 2.63 -67.93 -0.18 1.81 16 18 H 0.10 1.50 7.58 -51.93 -0.39 1.10 16 19 C -0.16 -2.06 8.86 37.16 0.33 -1.73 16 20 N -0.71 -8.42 4.99 -54.94 -0.27 -8.70 16 21 C 0.60 7.91 7.77 -12.60 -0.10 7.81 16 22 O -0.54 -8.51 16.54 5.25 0.09 -8.42 16 23 C -0.04 -0.50 6.97 -83.06 -0.58 -1.08 16 24 C 0.04 0.36 11.29 -16.27 -0.18 0.17 16 25 N -0.46 -2.93 3.16 -125.77 -0.40 -3.33 16 26 C 0.07 0.13 11.11 59.85 0.66 0.79 16 27 C 0.38 3.14 9.03 -89.16 -0.81 2.33 16 28 O -0.44 -2.56 13.55 -18.06 -0.24 -2.80 16 29 N -0.45 -4.94 11.03 -11.22 -0.12 -5.06 16 30 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 31 H 0.06 0.69 6.55 -51.93 -0.34 0.34 16 32 H 0.06 0.55 6.29 -51.93 -0.33 0.23 16 33 H 0.35 5.82 7.39 -39.29 -0.29 5.53 16 34 H 0.04 0.71 7.44 -51.93 -0.39 0.32 16 35 H 0.09 1.44 8.06 -51.93 -0.42 1.02 16 36 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 39 H 0.08 1.14 7.13 -51.93 -0.37 0.77 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.41 4.34 6.28 -40.82 -0.26 4.08 16 42 H 0.20 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 44 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 45 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 46 H 0.40 0.24 9.06 45.56 0.41 0.66 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -36.71 389.01 -6.44 -43.14 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -5.45 Total: 16.21 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -1.06 Total: 12.44 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -0.69 Total: -66.90 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.07 Total: -27.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.71 -6.44 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700418873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.753 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds