Wall clock time and date at job start Tue Mar 31 2020 23:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47073 * 2 1 4 4 N 1.46895 * 109.47223 * 239.99864 * 2 1 3 5 5 C 1.46898 * 111.00209 * 84.99883 * 4 2 1 6 6 C 1.50702 * 109.47223 * 179.97438 * 5 4 2 7 7 O 1.21290 * 120.00047 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99882 * 179.97438 * 6 5 4 9 9 C 1.37101 * 119.99885 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00060 * 359.97438 * 9 8 6 11 11 C 1.38946 * 120.00124 * 180.02562 * 9 8 6 12 12 N 1.31408 * 119.99907 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00051 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46925 * 89.99885 * 13 11 9 15 15 H 1.48503 * 109.47314 * 209.99897 * 13 11 9 16 16 H 1.48496 * 109.47231 * 330.00306 * 13 11 9 17 17 C 1.52997 * 109.47025 * 119.99308 * 2 1 3 18 18 H 1.08996 * 109.47137 * 184.99693 * 17 2 1 19 19 C 1.53004 * 109.46846 * 65.00539 * 17 2 1 20 20 N 1.46496 * 109.47544 * 305.00548 * 17 2 1 21 21 C 1.34783 * 120.00090 * 205.00294 * 20 17 2 22 22 O 1.21634 * 119.99849 * 359.97438 * 21 20 17 23 23 C 1.47246 * 120.00131 * 179.97438 * 21 20 17 24 24 C 1.36244 * 126.16671 * 179.97438 * 23 21 20 25 25 N 1.36340 * 106.89228 * 180.02562 * 24 23 21 26 26 C 1.46498 * 126.20251 * 180.02562 * 25 24 23 27 27 C 1.36176 * 107.59670 * 359.97438 * 25 24 23 28 28 O 1.35457 * 125.54979 * 180.02562 * 27 25 24 29 29 N 1.30702 * 108.89832 * 0.02562 * 27 25 24 30 30 H 1.08999 * 109.46602 * 60.00233 * 1 2 3 31 31 H 1.08991 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46750 * 300.00630 * 1 2 3 33 33 H 1.00907 * 111.00061 * 321.04278 * 4 2 1 34 34 H 1.08994 * 109.47237 * 300.00014 * 5 4 2 35 35 H 1.09003 * 109.46897 * 60.00248 * 5 4 2 36 36 H 0.96999 * 120.00392 * 0.02562 * 8 6 5 37 37 H 0.97002 * 119.99959 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.46985 * 299.99375 * 19 17 2 39 39 H 1.08995 * 109.47250 * 59.99633 * 19 17 2 40 40 H 1.08999 * 109.47416 * 180.02562 * 19 17 2 41 41 H 0.97002 * 120.00250 * 24.99090 * 20 17 2 42 42 H 1.08001 * 126.55501 * 0.03611 * 24 23 21 43 43 H 1.08999 * 109.46865 * 89.99782 * 26 25 24 44 44 H 1.09006 * 109.46961 * 209.99894 * 26 25 24 45 45 H 1.09002 * 109.46987 * 329.99574 * 26 25 24 46 46 H 0.96705 * 114.00121 * 269.98436 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5886 -0.5217 -3.5557 7 8 2.8689 -1.6986 -3.4698 8 7 2.7287 0.1204 -4.7323 9 6 3.1887 -0.5567 -5.8322 10 1 3.4390 -1.6045 -5.7555 11 6 3.3336 0.1052 -7.0452 12 7 3.0295 1.3802 -7.1383 13 14 3.9610 -0.8172 -8.5435 14 1 2.8124 -1.4003 -9.2825 15 1 4.6956 0.1204 -9.4304 16 1 4.8735 -1.9051 -8.1089 17 6 2.0400 -0.7211 1.2493 18 1 3.1263 -0.6442 1.2952 19 6 1.6353 -2.1954 1.1881 20 7 1.4558 -0.1035 2.4424 21 6 2.0913 -0.1935 3.6276 22 8 3.1495 -0.7879 3.7067 23 6 1.5044 0.4277 4.8267 24 6 2.0355 0.4138 6.0812 25 7 1.1738 1.1008 6.8840 26 6 1.3358 1.3437 8.3195 27 6 0.1359 1.5212 6.1092 28 8 -0.9285 2.2394 6.5406 29 7 0.3339 1.1188 4.8815 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.4496 -1.4980 -1.4099 34 1 1.0872 0.6162 -2.5525 35 1 2.7590 1.0461 -2.1182 36 1 2.5042 1.0615 -4.8011 37 1 3.1303 1.8423 -7.9852 38 1 0.5490 -2.2723 1.1422 39 1 2.0699 -2.6549 0.3004 40 1 1.9982 -2.7091 2.0783 41 1 0.6118 0.3704 2.3794 42 1 2.9622 -0.0522 6.3823 43 1 1.8804 2.2756 8.4711 44 1 0.3545 1.4158 8.7888 45 1 1.8927 0.5203 8.7668 46 1 -1.6720 1.6989 6.8410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700418873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:20 Heat of formation + Delta-G solvation = -74.569955 kcal Electronic energy + Delta-G solvation = -28590.846117 eV Core-core repulsion = 24322.995486 eV Total energy + Delta-G solvation = -4267.850630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.21883 -40.81718 -40.11492 -38.57712 -38.17025 -36.03774 -35.42409 -35.07209 -33.25988 -32.04321 -30.32063 -29.89912 -28.16836 -27.91010 -26.04852 -25.45815 -23.94293 -22.43430 -21.36389 -21.13877 -20.74771 -19.92085 -19.54172 -18.72283 -17.74208 -17.40400 -17.10152 -16.83135 -16.58785 -16.38776 -16.08494 -15.82211 -15.62401 -15.45241 -15.27962 -15.08313 -14.94088 -14.65997 -14.09615 -13.90115 -13.56136 -13.50928 -13.47822 -13.30008 -13.14507 -13.04298 -12.92183 -12.85550 -12.54532 -12.39910 -12.11353 -11.87184 -11.81769 -11.49362 -11.48584 -11.08306 -10.83884 -10.34659 -10.12206 -9.99618 -9.57292 -9.29888 -8.45046 -5.93643 0.46781 1.06534 1.39194 1.39718 1.42794 1.55755 2.07072 2.07651 2.31433 2.42953 2.76869 3.03668 3.22374 3.56862 3.60996 3.76648 3.84307 3.91833 4.10578 4.24113 4.31654 4.38074 4.39883 4.47808 4.48019 4.57088 4.63832 4.70884 4.76011 4.86442 4.89888 4.97298 5.04282 5.20740 5.25723 5.42622 5.43103 5.52842 5.63323 5.90204 6.10891 6.40946 6.42723 6.61980 6.62147 6.73470 7.14423 7.23947 7.58294 8.13722 8.72340 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030136 B = 0.001693 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.902803 B =16537.646982 C =16891.873750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.087 0.913 4 N -0.672 5.672 5 C 0.066 3.934 6 C 0.438 3.562 7 O -0.622 6.622 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.079 0.921 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.270 1.270 15 H -0.271 1.271 16 H -0.274 1.274 17 C 0.160 3.840 18 H 0.069 0.931 19 C -0.154 4.154 20 N -0.700 5.700 21 C 0.601 3.399 22 O -0.576 6.576 23 C -0.080 4.080 24 C 0.058 3.942 25 N -0.455 5.455 26 C 0.061 3.939 27 C 0.379 3.621 28 O -0.442 6.442 29 N -0.486 5.486 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.350 0.650 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.412 0.588 42 H 0.215 0.785 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 3.771 33.721 35.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.105 0.895 4 N -0.305 5.305 5 C -0.066 4.066 6 C 0.226 3.774 7 O -0.508 6.508 8 N -0.211 5.211 9 C -0.464 4.464 10 H 0.097 0.903 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.817 3.183 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.199 1.199 17 C 0.054 3.946 18 H 0.088 0.912 19 C -0.213 4.213 20 N -0.353 5.353 21 C 0.388 3.612 22 O -0.456 6.456 23 C -0.208 4.208 24 C -0.082 4.082 25 N -0.148 5.148 26 C -0.079 4.079 27 C 0.077 3.923 28 O -0.246 6.246 29 N -0.217 5.217 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.251 0.749 42 H 0.232 0.768 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -9.068 3.518 33.184 34.580 hybrid contribution -0.869 0.010 -0.439 0.974 sum -9.937 3.528 32.745 34.401 Atomic orbital electron populations 1.22540 0.95231 1.03240 1.03144 1.21679 0.94269 0.97780 0.88864 0.89483 1.59967 1.58754 1.09192 1.02593 1.21551 1.01303 0.95243 0.88494 1.20867 0.83407 0.88013 0.85121 1.90494 1.56569 1.18324 1.85437 1.41923 1.58369 1.12617 1.08168 1.19678 1.42144 0.95996 0.88553 0.90319 1.26033 0.97252 0.96615 1.01379 1.69673 1.48710 1.09674 1.28069 0.84924 0.78423 0.77790 0.77168 1.19540 1.19586 1.19899 1.20706 0.98030 0.92850 0.82974 0.91238 1.22080 1.02020 0.95207 1.01947 1.45881 1.26071 1.56046 1.07257 1.17110 0.83119 0.78458 0.82493 1.90797 1.23600 1.45237 1.85961 1.20261 0.96637 1.09237 0.94680 1.22982 0.97787 0.97832 0.89586 1.46041 1.17757 1.39418 1.11620 1.22527 1.06297 1.05066 0.74046 1.20344 0.88412 0.98476 0.85065 1.84890 1.24015 1.32355 1.83290 1.70730 1.17242 1.15098 1.18625 0.91796 0.91368 0.90486 0.83032 0.91086 0.88035 0.76971 0.91336 0.91158 0.91404 0.93480 0.74911 0.76835 0.89148 0.87231 0.86837 0.71427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.56 8.68 71.98 0.62 -2.94 16 2 C 0.08 2.08 2.64 44.92 0.12 2.20 16 3 H 0.09 2.09 7.80 -2.39 -0.02 2.07 16 4 N -0.67 -21.47 5.23 -495.58 -2.59 -24.06 16 5 C 0.07 2.30 5.97 85.56 0.51 2.81 16 6 C 0.44 21.18 7.82 87.66 0.69 21.86 16 7 O -0.62 -34.98 15.78 -3.06 -0.05 -35.03 16 8 N -0.57 -29.88 5.29 -306.99 -1.62 -31.50 16 9 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 10 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 11 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 12 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 13 Si 0.99 43.62 29.55 68.60 2.03 45.64 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 15 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 17 C 0.16 4.18 2.63 44.99 0.12 4.30 16 18 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16 19 C -0.15 -3.97 8.86 71.98 0.64 -3.33 16 20 N -0.70 -16.58 4.99 -445.97 -2.22 -18.80 16 21 C 0.60 16.00 7.77 86.61 0.67 16.67 16 22 O -0.58 -18.79 16.54 -4.14 -0.07 -18.86 16 23 C -0.08 -1.75 6.97 40.40 0.28 -1.47 16 24 C 0.06 0.87 11.29 83.53 0.94 1.82 16 25 N -0.46 -4.75 3.16 -662.74 -2.09 -6.85 16 26 C 0.06 0.03 11.11 127.77 1.42 1.45 16 27 C 0.38 5.63 9.03 179.84 1.62 7.25 16 28 O -0.44 -4.12 13.55 -87.55 -1.19 -5.30 16 29 N -0.49 -10.11 11.03 -303.16 -3.34 -13.46 16 30 H 0.06 1.25 7.45 -2.39 -0.02 1.23 16 31 H 0.07 1.31 6.55 -2.39 -0.02 1.29 16 32 H 0.08 1.25 6.29 -2.39 -0.02 1.24 16 33 H 0.35 11.54 7.39 -89.69 -0.66 10.87 16 34 H 0.07 2.12 7.44 -2.39 -0.02 2.10 16 35 H 0.10 3.25 8.06 -2.39 -0.02 3.23 16 36 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 37 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 38 H 0.07 1.54 6.56 -2.39 -0.02 1.52 16 39 H 0.07 1.94 7.13 -2.39 -0.02 1.92 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.41 8.50 6.28 -92.71 -0.58 7.92 16 42 H 0.22 2.26 8.06 -2.91 -0.02 2.23 16 43 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.11 -0.34 8.14 -2.38 -0.02 -0.36 16 45 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.42 -0.59 9.06 -74.05 -0.67 -1.26 16 Total: -1.00 -81.36 389.01 -3.53 -84.88 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: -1.57 Total: 41.40 kcal Atomic # 6 Polarization: 22.99 SS G_CDS: 8.92 Total: 31.91 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -11.59 Total: -144.63 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -1.30 Total: -59.19 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -81.36 -3.53 -84.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700418873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.312 kcal (2) G-P(sol) polarization free energy of solvation -81.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds