Wall clock time and date at job start Tue Mar 31 2020 23:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46844 * 2 1 4 4 C 1.53002 * 109.47279 * 239.99495 * 2 1 3 5 5 N 1.46496 * 109.47281 * 184.99902 * 4 2 1 6 6 C 1.34775 * 120.00242 * 180.02562 * 5 4 2 7 7 O 1.21729 * 119.99806 * 354.58815 * 6 5 4 8 8 C 1.46374 * 120.00026 * 174.59211 * 6 5 4 9 9 C 1.36719 * 126.82595 * 4.92866 * 8 6 5 10 10 N 1.33226 * 107.96396 * 180.02562 * 9 8 6 11 11 C 1.31539 * 109.76238 * 0.02562 * 10 9 8 12 12 O 1.35203 * 125.49582 * 180.02562 * 11 10 9 13 13 N 1.34949 * 109.01165 * 359.71639 * 11 10 9 14 14 C 1.46497 * 126.54703 * 180.27169 * 13 11 10 15 15 N 1.46895 * 109.46819 * 119.99521 * 2 1 3 16 16 C 1.46911 * 110.99915 * 58.95697 * 15 2 1 17 17 C 1.46891 * 111.00392 * 295.00114 * 15 2 1 18 18 C 1.50699 * 109.47477 * 189.99746 * 17 15 2 19 19 O 1.21289 * 120.00035 * 0.02562 * 18 17 15 20 20 N 1.34774 * 120.00191 * 179.97438 * 18 17 15 21 21 C 1.37104 * 120.00121 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00043 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99883 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00192 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99771 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47276 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46960 * 120.00461 * 25 23 21 28 28 H 1.48496 * 109.47291 * 240.00671 * 25 23 21 29 29 H 1.08999 * 109.47652 * 300.00641 * 1 2 3 30 30 H 1.09004 * 109.46940 * 60.00488 * 1 2 3 31 31 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46815 * 65.00215 * 4 2 1 33 33 H 1.08998 * 109.47420 * 305.00450 * 4 2 1 34 34 H 0.97003 * 119.99664 * 0.02562 * 5 4 2 35 35 H 1.08003 * 126.02282 * 0.02562 * 9 8 6 36 36 H 0.96697 * 114.00025 * 90.01648 * 12 11 10 37 37 H 1.09008 * 109.47592 * 272.54234 * 14 13 11 38 38 H 1.09006 * 109.46790 * 32.53852 * 14 13 11 39 39 H 1.09001 * 109.47298 * 152.53897 * 14 13 11 40 40 H 1.08998 * 109.47037 * 60.00017 * 16 15 2 41 41 H 1.08996 * 109.46669 * 180.02562 * 16 15 2 42 42 H 1.08996 * 109.46534 * 299.99701 * 16 15 2 43 43 H 1.08997 * 109.47336 * 310.00276 * 17 15 2 44 44 H 1.09003 * 109.47395 * 69.99954 * 17 15 2 45 45 H 0.96999 * 120.00471 * 0.02562 * 20 18 17 46 46 H 0.97001 * 119.99770 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1732 -1.4284 -2.1910 7 8 3.5638 -1.9712 -3.0943 8 6 5.6369 -1.4296 -2.1915 9 6 6.4571 -0.9490 -1.2089 10 7 7.7175 -1.1388 -1.5964 11 6 7.7373 -1.7164 -2.7780 12 8 8.8498 -2.0546 -3.4679 13 7 6.4682 -1.9231 -3.1876 14 6 6.0480 -2.5462 -4.4451 15 7 2.0196 -0.6924 1.1995 16 6 1.5282 -2.0761 1.2460 17 6 1.6486 0.0392 2.4180 18 6 2.3677 -0.5570 3.6006 19 8 3.1160 -1.4985 3.4436 20 7 2.1801 -0.0434 4.8324 21 6 2.8347 -0.5855 5.9082 22 1 3.5010 -1.4239 5.7685 23 6 2.6416 -0.0556 7.1781 24 7 1.8313 0.9648 7.3481 25 14 3.5330 -0.7947 8.6439 26 1 4.3800 -1.9266 8.1890 27 1 4.3892 0.2408 9.2762 28 1 2.5389 -1.2858 9.6317 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7517 -0.1584 -2.1370 33 1 1.6054 -1.7199 -1.2951 34 1 3.9824 -0.4628 -0.4315 35 1 6.1392 -0.4952 -0.2817 36 1 9.1726 -2.9467 -3.2809 37 1 5.9843 -1.7861 -5.2239 38 1 6.7754 -3.3042 -4.7359 39 1 5.0716 -3.0120 -4.3113 40 1 1.8762 -2.6151 0.3649 41 1 1.9052 -2.5654 2.1441 42 1 0.4384 -2.0741 1.2640 43 1 1.9296 1.0871 2.3124 44 1 0.5721 -0.0344 2.5725 45 1 1.5819 0.7098 4.9579 46 1 1.6963 1.3344 8.2347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700472339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:42 Heat of formation + Delta-G solvation = -29.069474 kcal Electronic energy + Delta-G solvation = -29577.711234 eV Core-core repulsion = 25311.833652 eV Total energy + Delta-G solvation = -4265.877581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.44982 -39.75583 -38.80436 -37.64383 -37.27612 -34.78634 -34.09729 -33.78246 -31.35956 -31.14981 -29.59496 -27.95091 -27.35959 -26.33361 -25.38029 -23.91983 -23.02652 -21.80932 -20.41029 -19.92087 -19.09201 -18.89882 -17.85070 -17.65146 -16.76767 -16.50886 -16.29279 -15.88508 -15.44985 -14.98423 -14.83118 -14.74893 -14.45847 -14.32940 -14.08466 -13.82815 -13.53381 -13.24755 -13.07551 -13.05598 -12.97758 -12.74624 -12.46927 -12.30689 -11.90472 -11.79705 -11.46600 -11.24858 -11.24000 -10.95943 -10.79159 -10.51071 -10.34696 -10.23306 -10.06768 -10.00261 -9.49394 -9.19992 -8.66336 -8.49897 -7.99816 -7.89267 -6.42936 -3.83565 0.97118 1.92395 2.41711 3.14376 3.15856 3.18549 3.26877 3.33791 3.52972 3.88137 3.92461 4.22960 4.45194 4.50701 4.63471 4.81580 4.88762 4.92181 5.09308 5.12919 5.17642 5.24140 5.25371 5.39990 5.45480 5.52191 5.66804 5.73100 5.75530 5.86801 5.88561 5.96333 6.12309 6.15955 6.20853 6.25905 6.34459 6.54654 7.18254 7.19355 7.30171 7.41390 7.54654 7.58521 8.05504 8.06372 8.60382 9.17442 9.53457 10.04863 10.74834 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.002573 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.837295 B =10881.314690 C =12737.713745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.091 0.909 4 C 0.134 3.866 5 N -0.697 5.697 6 C 0.596 3.404 7 O -0.557 6.557 8 C -0.079 4.079 9 C 0.064 3.936 10 N -0.485 5.485 11 C 0.393 3.607 12 O -0.440 6.440 13 N -0.430 5.430 14 C 0.067 3.933 15 N -0.511 5.511 16 C 0.016 3.984 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.416 0.584 35 H 0.191 0.809 36 H 0.404 0.596 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.020 0.980 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 -2.563 -21.168 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.047 4.047 3 H 0.109 0.891 4 C 0.010 3.990 5 N -0.349 5.349 6 C 0.383 3.617 7 O -0.437 6.437 8 C -0.195 4.195 9 C -0.091 4.091 10 N -0.213 5.213 11 C 0.094 3.906 12 O -0.241 6.241 13 N -0.123 5.123 14 C -0.075 4.075 15 N -0.234 5.234 16 C -0.132 4.132 17 C -0.087 4.087 18 C 0.229 3.771 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.253 0.747 35 H 0.207 0.793 36 H 0.261 0.739 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.039 0.961 43 H 0.106 0.894 44 H 0.068 0.932 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.249 -2.829 -21.786 22.208 hybrid contribution -1.192 -0.320 0.902 1.529 sum 2.057 -3.149 -20.884 21.220 Atomic orbital electron populations 1.22401 0.96474 1.02882 1.02775 1.22060 0.93585 0.98752 0.90285 0.89125 1.21438 0.79226 1.01245 0.97063 1.45458 1.07864 1.58685 1.22847 1.16558 0.84251 0.78537 0.82382 1.90772 1.69769 1.45775 1.37383 1.20562 0.92395 1.13595 0.92915 1.22716 0.87065 1.00345 0.99010 1.70349 1.23126 1.19444 1.08424 1.20278 0.79273 1.01428 0.89666 1.84816 1.36880 1.38479 1.63940 1.45624 1.06061 1.43761 1.16889 1.22268 1.03694 0.98723 0.82818 1.61826 1.58901 1.02519 1.00197 1.22607 0.96774 0.89394 1.04399 1.21881 0.98172 0.98444 0.90203 1.19723 0.86703 0.86926 0.83761 1.90493 1.40701 1.30178 1.84715 1.41879 1.41508 1.31177 1.05554 1.19736 1.23309 1.14753 0.84867 0.87852 1.25253 0.97330 0.96334 0.99041 1.69616 1.36714 1.23935 1.24081 0.85820 0.79025 0.78982 0.80647 1.19197 1.20743 1.20829 0.91553 0.91895 0.91788 0.91004 0.91016 0.74716 0.79257 0.73868 0.90194 0.89765 0.87241 0.92096 0.88574 0.96147 0.89387 0.93173 0.77546 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 8.50 37.16 0.32 -1.41 16 2 C 0.06 0.65 2.50 -67.71 -0.17 0.48 16 3 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 4 C 0.13 1.41 4.69 -4.04 -0.02 1.39 16 5 N -0.70 -7.94 5.37 -61.71 -0.33 -8.28 16 6 C 0.60 7.65 7.77 -12.99 -0.10 7.55 16 7 O -0.56 -8.21 14.84 5.16 0.08 -8.13 16 8 C -0.08 -0.98 6.92 -81.98 -0.57 -1.55 16 9 C 0.06 0.79 11.35 -17.50 -0.20 0.60 16 10 N -0.49 -6.65 11.22 -14.62 -0.16 -6.81 16 11 C 0.39 4.58 9.01 -89.59 -0.81 3.77 16 12 O -0.44 -3.80 13.53 -17.31 -0.23 -4.03 16 13 N -0.43 -4.81 3.20 -122.12 -0.39 -5.20 16 14 C 0.07 0.54 10.75 59.85 0.64 1.19 16 15 N -0.51 -7.17 3.93 -236.34 -0.93 -8.10 16 16 C 0.02 0.24 8.46 60.07 0.51 0.74 16 17 C 0.04 0.70 4.89 -4.98 -0.02 0.68 16 18 C 0.44 9.74 7.47 -10.99 -0.08 9.66 16 19 O -0.58 -14.53 13.91 5.55 0.08 -14.45 16 20 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 21 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 25 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.07 0.65 6.75 -51.93 -0.35 0.29 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.62 6.39 -51.93 -0.33 0.29 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.07 0.82 6.70 -51.93 -0.35 0.48 16 34 H 0.42 4.65 7.07 -40.82 -0.29 4.36 16 35 H 0.19 2.02 7.45 -52.48 -0.39 1.63 16 36 H 0.40 1.34 9.06 45.56 0.41 1.76 16 37 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.11 1.03 6.30 -51.93 -0.33 0.70 16 40 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 41 H 0.10 1.80 5.82 -51.93 -0.30 1.49 16 42 H 0.02 0.27 6.28 -51.93 -0.33 -0.05 16 43 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 44 H 0.05 0.74 6.94 -51.93 -0.36 0.38 16 45 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 46 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -34.40 379.87 -6.57 -40.98 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -5.30 Total: 14.27 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: -0.74 Total: 15.40 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -1.15 Total: -65.48 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.08 Total: -26.61 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.40 -6.57 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700472339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.909 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds