Wall clock time and date at job start Tue Mar 31 2020 23:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46844 * 2 1 4 4 C 1.53002 * 109.47279 * 239.99495 * 2 1 3 5 5 N 1.46496 * 109.47281 * 184.99902 * 4 2 1 6 6 C 1.34775 * 120.00242 * 180.02562 * 5 4 2 7 7 O 1.21729 * 119.99806 * 354.58815 * 6 5 4 8 8 C 1.46374 * 120.00026 * 174.59211 * 6 5 4 9 9 C 1.36719 * 126.82595 * 4.92866 * 8 6 5 10 10 N 1.33226 * 107.96396 * 180.02562 * 9 8 6 11 11 C 1.31539 * 109.76238 * 0.02562 * 10 9 8 12 12 O 1.35203 * 125.49582 * 180.02562 * 11 10 9 13 13 N 1.34949 * 109.01165 * 359.71639 * 11 10 9 14 14 C 1.46497 * 126.54703 * 180.27169 * 13 11 10 15 15 N 1.46895 * 109.46819 * 119.99521 * 2 1 3 16 16 C 1.46911 * 110.99915 * 58.95697 * 15 2 1 17 17 C 1.46891 * 111.00392 * 295.00114 * 15 2 1 18 18 C 1.50699 * 109.47477 * 189.99746 * 17 15 2 19 19 O 1.21289 * 120.00035 * 0.02562 * 18 17 15 20 20 N 1.34774 * 120.00191 * 179.97438 * 18 17 15 21 21 C 1.37104 * 120.00121 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00043 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99883 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00192 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99771 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47276 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46960 * 120.00461 * 25 23 21 28 28 H 1.48496 * 109.47291 * 240.00671 * 25 23 21 29 29 H 1.08999 * 109.47652 * 300.00641 * 1 2 3 30 30 H 1.09004 * 109.46940 * 60.00488 * 1 2 3 31 31 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46815 * 65.00215 * 4 2 1 33 33 H 1.08998 * 109.47420 * 305.00450 * 4 2 1 34 34 H 0.97003 * 119.99664 * 0.02562 * 5 4 2 35 35 H 1.08003 * 126.02282 * 0.02562 * 9 8 6 36 36 H 0.96697 * 114.00025 * 90.01648 * 12 11 10 37 37 H 1.09008 * 109.47592 * 272.54234 * 14 13 11 38 38 H 1.09006 * 109.46790 * 32.53852 * 14 13 11 39 39 H 1.09001 * 109.47298 * 152.53897 * 14 13 11 40 40 H 1.08998 * 109.47037 * 60.00017 * 16 15 2 41 41 H 1.08996 * 109.46669 * 180.02562 * 16 15 2 42 42 H 1.08996 * 109.46534 * 299.99701 * 16 15 2 43 43 H 1.08997 * 109.47336 * 310.00276 * 17 15 2 44 44 H 1.09003 * 109.47395 * 69.99954 * 17 15 2 45 45 H 0.96999 * 120.00471 * 0.02562 * 20 18 17 46 46 H 0.97001 * 119.99770 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1732 -1.4284 -2.1910 7 8 3.5638 -1.9712 -3.0943 8 6 5.6369 -1.4296 -2.1915 9 6 6.4571 -0.9490 -1.2089 10 7 7.7175 -1.1388 -1.5964 11 6 7.7373 -1.7164 -2.7780 12 8 8.8498 -2.0546 -3.4679 13 7 6.4682 -1.9231 -3.1876 14 6 6.0480 -2.5462 -4.4451 15 7 2.0196 -0.6924 1.1995 16 6 1.5282 -2.0761 1.2460 17 6 1.6486 0.0392 2.4180 18 6 2.3677 -0.5570 3.6006 19 8 3.1160 -1.4985 3.4436 20 7 2.1801 -0.0434 4.8324 21 6 2.8347 -0.5855 5.9082 22 1 3.5010 -1.4239 5.7685 23 6 2.6416 -0.0556 7.1781 24 7 1.8313 0.9648 7.3481 25 14 3.5330 -0.7947 8.6439 26 1 4.3800 -1.9266 8.1890 27 1 4.3892 0.2408 9.2762 28 1 2.5389 -1.2858 9.6317 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7517 -0.1584 -2.1370 33 1 1.6054 -1.7199 -1.2951 34 1 3.9824 -0.4628 -0.4315 35 1 6.1392 -0.4952 -0.2817 36 1 9.1726 -2.9467 -3.2809 37 1 5.9843 -1.7861 -5.2239 38 1 6.7754 -3.3042 -4.7359 39 1 5.0716 -3.0120 -4.3113 40 1 1.8762 -2.6151 0.3649 41 1 1.9052 -2.5654 2.1441 42 1 0.4384 -2.0741 1.2640 43 1 1.9296 1.0871 2.3124 44 1 0.5721 -0.0344 2.5725 45 1 1.5819 0.7098 4.9579 46 1 1.6963 1.3344 8.2347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700472339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:41 Heat of formation + Delta-G solvation = -59.941795 kcal Electronic energy + Delta-G solvation = -29579.049958 eV Core-core repulsion = 25311.833652 eV Total energy + Delta-G solvation = -4267.216306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.32752 -40.82772 -40.17373 -38.72142 -38.30904 -35.98376 -35.58612 -34.88328 -33.21632 -32.26867 -30.48427 -29.31163 -28.09425 -27.20163 -26.97067 -25.35298 -23.98066 -22.64680 -21.44168 -21.07435 -20.56540 -19.75440 -19.67254 -18.55955 -17.92464 -17.48209 -17.24302 -17.05789 -16.59255 -16.44270 -16.20593 -15.88990 -15.69953 -15.48149 -15.17298 -15.02598 -14.74603 -14.54202 -14.15099 -13.90141 -13.71390 -13.67793 -13.59955 -13.40234 -13.19782 -13.04863 -12.85079 -12.77002 -12.39039 -12.32810 -12.21965 -12.09416 -11.72235 -11.43209 -11.39803 -11.02185 -10.89520 -10.20510 -10.14203 -9.93286 -9.55762 -9.13136 -8.42117 -5.89331 0.08220 1.11045 1.38739 1.44160 1.52437 1.57471 2.14098 2.20919 2.26729 2.32248 2.78303 2.82671 3.26010 3.49329 3.62548 3.76491 3.80650 3.94568 4.11649 4.27216 4.31138 4.32381 4.35557 4.40889 4.59595 4.60445 4.62966 4.66891 4.72150 4.78904 4.90091 4.95387 5.07022 5.24754 5.30085 5.34865 5.44633 5.46601 5.54330 5.92955 6.11670 6.24980 6.44832 6.56013 6.67234 6.68920 7.10886 7.19855 7.64909 8.21061 8.75546 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.002573 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.837295 B =10881.314690 C =12737.713745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.108 0.892 4 C 0.136 3.864 5 N -0.692 5.692 6 C 0.597 3.403 7 O -0.579 6.579 8 C -0.093 4.093 9 C 0.059 3.941 10 N -0.521 5.521 11 C 0.400 3.600 12 O -0.440 6.440 13 N -0.431 5.431 14 C 0.064 3.936 15 N -0.522 5.522 16 C 0.026 3.974 17 C 0.058 3.942 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.578 5.578 21 C -0.325 4.325 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.988 3.012 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.417 0.583 35 H 0.199 0.801 36 H 0.428 0.572 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.114 0.886 44 H 0.069 0.931 45 H 0.395 0.605 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -1.957 -22.360 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.039 4.039 3 H 0.126 0.874 4 C 0.012 3.988 5 N -0.343 5.343 6 C 0.384 3.616 7 O -0.461 6.461 8 C -0.209 4.209 9 C -0.096 4.096 10 N -0.250 5.250 11 C 0.100 3.900 12 O -0.244 6.244 13 N -0.124 5.124 14 C -0.076 4.076 15 N -0.246 5.246 16 C -0.122 4.122 17 C -0.073 4.073 18 C 0.231 3.769 19 O -0.497 6.497 20 N -0.216 5.216 21 C -0.455 4.455 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.564 5.564 25 Si 0.812 3.188 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.199 1.199 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.254 0.746 35 H 0.216 0.784 36 H 0.289 0.711 37 H 0.106 0.894 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.132 0.868 44 H 0.087 0.913 45 H 0.229 0.771 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.918 -2.226 -22.997 23.288 hybrid contribution -1.040 -0.559 1.146 1.645 sum 1.879 -2.786 -21.851 22.108 Atomic orbital electron populations 1.22366 0.95039 1.02891 1.03840 1.22120 0.94643 0.98974 0.88180 0.87417 1.21503 0.78526 1.01038 0.97687 1.45485 1.08316 1.58051 1.22426 1.16627 0.84414 0.78310 0.82290 1.90757 1.70193 1.46909 1.38273 1.20578 0.92334 1.14397 0.93610 1.22910 0.86961 1.00302 0.99448 1.70319 1.23775 1.21043 1.09913 1.20348 0.80056 1.00438 0.89151 1.84779 1.35741 1.40499 1.63393 1.45795 1.05766 1.43427 1.17417 1.22447 1.03929 0.99515 0.81754 1.61744 1.59821 1.02252 1.00765 1.22400 0.97515 0.89818 1.02506 1.21738 0.98171 0.99162 0.88214 1.20836 0.85655 0.85818 0.84596 1.90481 1.42132 1.31654 1.85460 1.41950 1.42015 1.31692 1.05916 1.19644 1.24265 1.15020 0.86569 0.90408 1.25952 0.97865 0.96614 1.00905 1.69671 1.37311 1.24502 1.24870 0.84943 0.78061 0.78151 0.77646 1.19858 1.19804 1.19865 0.91622 0.89707 0.92313 0.89430 0.91931 0.74588 0.78426 0.71067 0.89416 0.86716 0.88583 0.91412 0.92841 0.94616 0.86826 0.91345 0.77108 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.50 71.98 0.61 -2.20 16 2 C 0.07 1.26 2.50 44.92 0.11 1.38 16 3 H 0.11 1.68 8.03 -2.39 -0.02 1.66 16 4 C 0.14 2.59 4.69 86.38 0.41 3.00 16 5 N -0.69 -15.06 5.37 -467.36 -2.51 -17.57 16 6 C 0.60 14.99 7.77 86.36 0.67 15.66 16 7 O -0.58 -16.75 14.84 -4.44 -0.07 -16.81 16 8 C -0.09 -2.28 6.92 39.80 0.28 -2.01 16 9 C 0.06 1.46 11.35 84.13 0.96 2.42 16 10 N -0.52 -14.15 11.22 -313.64 -3.52 -17.67 16 11 C 0.40 8.92 9.01 179.99 1.62 10.54 16 12 O -0.44 -6.79 13.53 -84.84 -1.15 -7.94 16 13 N -0.43 -9.25 3.20 -651.99 -2.09 -11.34 16 14 C 0.06 0.96 10.75 127.77 1.37 2.33 16 15 N -0.52 -13.91 3.93 -901.64 -3.54 -17.45 16 16 C 0.03 0.75 8.46 127.69 1.08 1.83 16 17 C 0.06 1.75 4.89 85.56 0.42 2.17 16 18 C 0.44 19.63 7.47 87.66 0.66 20.28 16 19 O -0.61 -31.68 13.91 -3.06 -0.04 -31.72 16 20 N -0.58 -28.38 5.29 -306.99 -1.62 -30.00 16 21 C -0.33 -18.01 9.68 84.04 0.81 -17.20 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -49.06 13.05 21.66 0.28 -48.77 16 25 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 H 0.06 1.05 6.75 -2.39 -0.02 1.04 16 30 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.06 0.98 6.39 -2.39 -0.02 0.97 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.06 1.34 6.70 -2.39 -0.02 1.32 16 34 H 0.42 8.97 7.07 -92.71 -0.66 8.31 16 35 H 0.20 4.27 7.45 -2.91 -0.02 4.25 16 36 H 0.43 1.92 9.06 -74.06 -0.67 1.25 16 37 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.10 1.75 6.30 -2.39 -0.02 1.73 16 40 H 0.07 1.85 6.44 -2.39 -0.02 1.84 16 41 H 0.05 2.04 5.82 -2.39 -0.01 2.03 16 42 H 0.04 0.91 6.28 -2.39 -0.02 0.90 16 43 H 0.11 2.90 8.00 -2.39 -0.02 2.88 16 44 H 0.07 1.86 6.94 -2.39 -0.02 1.84 16 45 H 0.40 18.46 7.90 -92.71 -0.73 17.72 16 46 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -75.64 379.87 -3.76 -79.41 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.99 Total: 37.26 kcal Atomic # 6 Polarization: 28.46 SS G_CDS: 9.46 Total: 37.92 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -13.00 Total: -142.80 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -1.26 Total: -56.48 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -75.64 -3.76 -79.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700472339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.464 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds