Wall clock time and date at job start Tue Mar 31 2020 23:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.46543 * 2 1 4 4 C 1.53002 * 109.46729 * 119.99329 * 2 1 3 5 5 N 1.46498 * 109.47295 * 63.89252 * 4 2 1 6 6 C 1.34780 * 120.00246 * 175.08063 * 5 4 2 7 7 O 1.21739 * 119.99487 * 4.73668 * 6 5 4 8 8 C 1.46376 * 119.99928 * 184.45937 * 6 5 4 9 9 C 1.36721 * 126.82527 * 174.58991 * 8 6 5 10 10 N 1.33214 * 107.96719 * 179.97438 * 9 8 6 11 11 C 1.31543 * 109.75877 * 0.02562 * 10 9 8 12 12 O 1.35202 * 125.49086 * 180.02562 * 11 10 9 13 13 N 1.34947 * 109.01396 * 359.74221 * 11 10 9 14 14 C 1.46498 * 126.54216 * 180.24640 * 13 11 10 15 15 N 1.46897 * 109.47292 * 239.99188 * 2 1 3 16 16 C 1.46894 * 110.99939 * 188.72954 * 15 2 1 17 17 C 1.46899 * 110.99802 * 64.77747 * 15 2 1 18 18 C 1.50703 * 109.47055 * 189.99691 * 17 15 2 19 19 O 1.21287 * 119.99695 * 0.02562 * 18 17 15 20 20 N 1.34776 * 119.99748 * 179.97438 * 18 17 15 21 21 C 1.37098 * 119.99607 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00382 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00000 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99735 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47155 * 59.99490 * 25 23 21 27 27 H 1.48496 * 109.46807 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46728 * 299.99456 * 25 23 21 29 29 H 1.08993 * 109.47306 * 300.00651 * 1 2 3 30 30 H 1.08998 * 109.46857 * 60.01159 * 1 2 3 31 31 H 1.09006 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47224 * 303.89362 * 4 2 1 33 33 H 1.08995 * 109.46762 * 183.89475 * 4 2 1 34 34 H 0.97003 * 119.99890 * 355.08239 * 5 4 2 35 35 H 1.08004 * 126.01734 * 359.95854 * 9 8 6 36 36 H 0.96699 * 114.00191 * 90.01902 * 12 11 10 37 37 H 1.08994 * 109.47709 * 262.95958 * 14 13 11 38 38 H 1.08999 * 109.46822 * 22.96426 * 14 13 11 39 39 H 1.09000 * 109.46813 * 142.96288 * 14 13 11 40 40 H 1.09001 * 109.47347 * 65.74241 * 16 15 2 41 41 H 1.08996 * 109.47318 * 185.74309 * 16 15 2 42 42 H 1.09002 * 109.46999 * 305.74237 * 16 15 2 43 43 H 1.09004 * 109.47250 * 309.99730 * 17 15 2 44 44 H 1.09002 * 109.47267 * 69.99947 * 17 15 2 45 45 H 0.97001 * 120.00372 * 0.02562 * 20 18 17 46 46 H 0.97008 * 120.00098 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6297 -2.1267 1.2036 6 6 2.0519 -2.9834 2.1546 7 8 2.7024 -2.5728 3.0982 8 6 1.7232 -4.4063 2.0560 9 6 2.1614 -5.4075 2.8776 10 7 1.6330 -6.5524 2.4481 11 6 0.8807 -6.3268 1.3929 12 8 0.1936 -7.2652 0.7035 13 7 0.9003 -5.0068 1.1131 14 6 0.1912 -4.3361 0.0206 15 7 2.0198 -0.6926 -1.1993 16 6 3.4732 -0.8951 -1.1337 17 6 1.6443 0.0361 -2.4183 18 6 1.9424 -0.8161 -3.6249 19 8 2.4202 -1.9218 -3.4833 20 7 1.6772 -0.3498 -4.8613 21 6 1.9479 -1.1253 -5.9590 22 1 2.3734 -2.1099 -5.8330 23 6 1.6749 -0.6444 -7.2338 24 7 1.1568 0.5534 -7.3871 25 14 2.0432 -1.7013 -8.7294 26 1 1.2647 -2.9632 -8.6476 27 1 1.6632 -0.9647 -9.9616 28 1 3.4939 -2.0161 -8.7679 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5136 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6208 -0.2490 2.1379 33 1 3.1277 -0.6611 1.2850 34 1 1.0542 -2.4409 0.4888 35 1 2.8201 -5.2906 3.7255 36 1 -0.7054 -7.4121 1.0281 37 1 0.8681 -4.2003 -0.8228 38 1 -0.6579 -4.9452 -0.2893 39 1 -0.1644 -3.3636 0.3613 40 1 3.7083 -1.5799 -0.3189 41 1 3.8242 -1.3169 -2.0754 42 1 3.9657 0.0613 -0.9580 43 1 0.5792 0.2665 -2.3903 44 1 2.2151 0.9628 -2.4780 45 1 1.2947 0.5344 -4.9745 46 1 0.9659 0.8890 -8.2771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700472341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:45 Heat of formation + Delta-G solvation = -20.980286 kcal Electronic energy + Delta-G solvation = -30282.056258 eV Core-core repulsion = 26016.529450 eV Total energy + Delta-G solvation = -4265.526808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.48228 -39.84496 -38.78517 -37.63894 -37.26375 -35.06987 -34.14397 -33.68051 -31.35203 -31.26022 -29.64959 -28.51880 -27.50350 -26.30691 -25.01046 -23.92068 -22.95366 -21.84451 -20.72822 -20.04833 -19.20093 -18.84608 -17.96111 -17.72880 -16.76941 -16.71057 -15.94104 -15.87060 -15.66201 -14.99212 -14.83349 -14.71587 -14.61841 -14.44106 -14.02712 -13.91721 -13.70463 -13.57440 -13.25386 -12.99167 -12.73992 -12.55795 -12.35336 -12.34594 -12.01113 -11.71733 -11.56075 -11.50937 -11.28643 -10.98145 -10.73095 -10.57671 -10.50431 -10.28896 -10.14066 -10.04180 -9.54567 -9.26614 -8.65693 -8.56810 -8.09018 -8.00324 -6.49570 -3.90714 0.98635 1.98604 2.43641 2.98732 3.13982 3.19369 3.20714 3.24527 3.51380 3.79373 3.83191 4.15881 4.25979 4.38924 4.53880 4.75345 4.81422 4.96002 5.01839 5.10567 5.17404 5.21359 5.28420 5.39433 5.45360 5.54920 5.60775 5.61631 5.65814 5.78599 5.82077 5.90011 6.05305 6.15614 6.17752 6.20352 6.26556 6.45164 7.10431 7.18821 7.21653 7.33864 7.47355 7.58648 7.97663 8.00798 8.52839 9.09950 9.45713 9.96904 10.67882 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.002929 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.112051 B = 9558.902130 C =11141.359546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.059 0.941 4 C 0.126 3.874 5 N -0.717 5.717 6 C 0.595 3.405 7 O -0.533 6.533 8 C -0.083 4.083 9 C 0.082 3.918 10 N -0.492 5.492 11 C 0.402 3.598 12 O -0.438 6.438 13 N -0.443 5.443 14 C 0.054 3.946 15 N -0.515 5.515 16 C 0.020 3.980 17 C 0.041 3.959 18 C 0.442 3.558 19 O -0.579 6.579 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.024 3.976 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.406 0.594 35 H 0.190 0.810 36 H 0.404 0.596 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.016 0.984 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.392 0.608 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -2.568 16.712 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.048 4.048 3 H 0.077 0.923 4 C 0.002 3.998 5 N -0.374 5.374 6 C 0.382 3.618 7 O -0.410 6.410 8 C -0.198 4.198 9 C -0.072 4.072 10 N -0.220 5.220 11 C 0.102 3.898 12 O -0.239 6.239 13 N -0.138 5.138 14 C -0.088 4.088 15 N -0.240 5.240 16 C -0.128 4.128 17 C -0.090 4.090 18 C 0.228 3.772 19 O -0.463 6.463 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.207 0.793 36 H 0.261 0.739 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.035 0.965 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.834 -4.153 17.046 18.199 hybrid contribution -0.664 1.569 -1.629 2.357 sum -5.497 -2.585 15.418 16.571 Atomic orbital electron populations 1.21904 0.93936 1.02298 1.02309 1.22011 0.96315 0.96342 0.90130 0.92296 1.21480 1.00602 0.80640 0.97072 1.46282 1.52306 1.09869 1.28917 1.16689 0.79562 0.83025 0.82549 1.90855 1.40421 1.77348 1.32414 1.21050 1.06768 0.94844 0.97109 1.22496 0.99813 0.85571 0.99364 1.70387 1.13949 1.27995 1.09703 1.20266 0.98460 0.78778 0.92261 1.84864 1.31226 1.52906 1.54889 1.45932 1.36217 1.07686 1.23977 1.22427 0.98772 0.98401 0.89174 1.61667 1.14584 1.47805 0.99951 1.22565 0.86307 0.99199 1.04724 1.21940 1.01684 0.95214 0.90144 1.19697 0.85230 0.88458 0.83837 1.90490 1.48845 1.21420 1.85583 1.41864 1.55700 1.17880 1.04425 1.19638 1.39421 1.00453 0.83531 0.87968 1.25257 0.96946 0.96448 0.99145 1.69598 1.43429 1.16827 1.24373 0.85930 0.79080 0.79426 0.79883 1.19872 1.20945 1.19880 0.91891 0.91566 0.92398 0.90812 0.90741 0.75224 0.79293 0.73896 0.87824 0.88180 0.89281 0.91918 0.88637 0.96502 0.89093 0.93347 0.77522 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.97 37.16 0.33 -0.98 16 2 C 0.06 0.64 2.33 -67.71 -0.16 0.48 16 3 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 4 C 0.13 1.35 4.55 -4.04 -0.02 1.33 16 5 N -0.72 -8.23 4.87 -61.71 -0.30 -8.54 16 6 C 0.60 7.90 7.77 -12.99 -0.10 7.80 16 7 O -0.53 -8.36 16.91 5.15 0.09 -8.27 16 8 C -0.08 -1.05 6.92 -81.98 -0.57 -1.62 16 9 C 0.08 1.04 11.64 -17.50 -0.20 0.83 16 10 N -0.49 -6.57 11.22 -14.62 -0.16 -6.73 16 11 C 0.40 4.73 9.00 -89.59 -0.81 3.93 16 12 O -0.44 -4.03 13.42 -17.30 -0.23 -4.27 16 13 N -0.44 -4.92 3.20 -122.13 -0.39 -5.31 16 14 C 0.05 0.48 9.67 59.85 0.58 1.06 16 15 N -0.51 -7.20 3.93 -236.33 -0.93 -8.12 16 16 C 0.02 0.30 8.43 60.06 0.51 0.80 16 17 C 0.04 0.65 5.31 -4.98 -0.03 0.62 16 18 C 0.44 9.53 7.42 -10.98 -0.08 9.45 16 19 O -0.58 -14.29 13.97 5.55 0.08 -14.21 16 20 N -0.56 -13.37 5.29 -10.96 -0.06 -13.43 16 21 C -0.30 -8.01 9.68 -14.93 -0.14 -8.16 16 22 H 0.10 2.86 7.16 -52.48 -0.38 2.48 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -23.67 13.05 55.50 0.72 -22.94 16 25 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.61 6.32 -51.93 -0.33 0.28 16 31 H 0.06 0.51 6.90 -51.93 -0.36 0.16 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.88 6.69 -51.93 -0.35 0.53 16 34 H 0.41 4.43 3.03 -40.82 -0.12 4.31 16 35 H 0.19 2.02 8.06 -52.48 -0.42 1.60 16 36 H 0.40 1.40 9.06 45.56 0.41 1.81 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.10 0.63 8.00 -51.93 -0.42 0.21 16 39 H 0.09 0.68 5.94 -51.93 -0.31 0.37 16 40 H 0.06 0.92 6.49 -51.93 -0.34 0.58 16 41 H 0.10 1.79 5.79 -51.93 -0.30 1.49 16 42 H 0.02 0.23 8.12 -51.93 -0.42 -0.20 16 43 H 0.09 1.25 6.02 -51.93 -0.31 0.94 16 44 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.39 8.95 7.90 -40.82 -0.32 8.62 16 46 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -33.87 378.39 -6.50 -40.37 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.21 Total: 14.28 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: -0.78 Total: 16.08 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -1.12 Total: -65.08 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.75 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.87 -6.50 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700472341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.392 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds