Wall clock time and date at job start Tue Mar 31 2020 23:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.46543 * 2 1 4 4 C 1.53002 * 109.46729 * 119.99329 * 2 1 3 5 5 N 1.46498 * 109.47295 * 63.89252 * 4 2 1 6 6 C 1.34780 * 120.00246 * 175.08063 * 5 4 2 7 7 O 1.21739 * 119.99487 * 4.73668 * 6 5 4 8 8 C 1.46376 * 119.99928 * 184.45937 * 6 5 4 9 9 C 1.36721 * 126.82527 * 174.58991 * 8 6 5 10 10 N 1.33214 * 107.96719 * 179.97438 * 9 8 6 11 11 C 1.31543 * 109.75877 * 0.02562 * 10 9 8 12 12 O 1.35202 * 125.49086 * 180.02562 * 11 10 9 13 13 N 1.34947 * 109.01396 * 359.74221 * 11 10 9 14 14 C 1.46498 * 126.54216 * 180.24640 * 13 11 10 15 15 N 1.46897 * 109.47292 * 239.99188 * 2 1 3 16 16 C 1.46894 * 110.99939 * 188.72954 * 15 2 1 17 17 C 1.46899 * 110.99802 * 64.77747 * 15 2 1 18 18 C 1.50703 * 109.47055 * 189.99691 * 17 15 2 19 19 O 1.21287 * 119.99695 * 0.02562 * 18 17 15 20 20 N 1.34776 * 119.99748 * 179.97438 * 18 17 15 21 21 C 1.37098 * 119.99607 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00382 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00000 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99735 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47155 * 59.99490 * 25 23 21 27 27 H 1.48496 * 109.46807 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46728 * 299.99456 * 25 23 21 29 29 H 1.08993 * 109.47306 * 300.00651 * 1 2 3 30 30 H 1.08998 * 109.46857 * 60.01159 * 1 2 3 31 31 H 1.09006 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47224 * 303.89362 * 4 2 1 33 33 H 1.08995 * 109.46762 * 183.89475 * 4 2 1 34 34 H 0.97003 * 119.99890 * 355.08239 * 5 4 2 35 35 H 1.08004 * 126.01734 * 359.95854 * 9 8 6 36 36 H 0.96699 * 114.00191 * 90.01902 * 12 11 10 37 37 H 1.08994 * 109.47709 * 262.95958 * 14 13 11 38 38 H 1.08999 * 109.46822 * 22.96426 * 14 13 11 39 39 H 1.09000 * 109.46813 * 142.96288 * 14 13 11 40 40 H 1.09001 * 109.47347 * 65.74241 * 16 15 2 41 41 H 1.08996 * 109.47318 * 185.74309 * 16 15 2 42 42 H 1.09002 * 109.46999 * 305.74237 * 16 15 2 43 43 H 1.09004 * 109.47250 * 309.99730 * 17 15 2 44 44 H 1.09002 * 109.47267 * 69.99947 * 17 15 2 45 45 H 0.97001 * 120.00372 * 0.02562 * 20 18 17 46 46 H 0.97008 * 120.00098 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6297 -2.1267 1.2036 6 6 2.0519 -2.9834 2.1546 7 8 2.7024 -2.5728 3.0982 8 6 1.7232 -4.4063 2.0560 9 6 2.1614 -5.4075 2.8776 10 7 1.6330 -6.5524 2.4481 11 6 0.8807 -6.3268 1.3929 12 8 0.1936 -7.2652 0.7035 13 7 0.9003 -5.0068 1.1131 14 6 0.1912 -4.3361 0.0206 15 7 2.0198 -0.6926 -1.1993 16 6 3.4732 -0.8951 -1.1337 17 6 1.6443 0.0361 -2.4183 18 6 1.9424 -0.8161 -3.6249 19 8 2.4202 -1.9218 -3.4833 20 7 1.6772 -0.3498 -4.8613 21 6 1.9479 -1.1253 -5.9590 22 1 2.3734 -2.1099 -5.8330 23 6 1.6749 -0.6444 -7.2338 24 7 1.1568 0.5534 -7.3871 25 14 2.0432 -1.7013 -8.7294 26 1 1.2647 -2.9632 -8.6476 27 1 1.6632 -0.9647 -9.9616 28 1 3.4939 -2.0161 -8.7679 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5136 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6208 -0.2490 2.1379 33 1 3.1277 -0.6611 1.2850 34 1 1.0542 -2.4409 0.4888 35 1 2.8201 -5.2906 3.7255 36 1 -0.7054 -7.4121 1.0281 37 1 0.8681 -4.2003 -0.8228 38 1 -0.6579 -4.9452 -0.2893 39 1 -0.1644 -3.3636 0.3613 40 1 3.7083 -1.5799 -0.3189 41 1 3.8242 -1.3169 -2.0754 42 1 3.9657 0.0613 -0.9580 43 1 0.5792 0.2665 -2.3903 44 1 2.2151 0.9628 -2.4780 45 1 1.2947 0.5344 -4.9745 46 1 0.9659 0.8890 -8.2771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700472341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:44 Heat of formation + Delta-G solvation = -50.865619 kcal Electronic energy + Delta-G solvation = -30283.352184 eV Core-core repulsion = 26016.529450 eV Total energy + Delta-G solvation = -4266.822733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.38172 -40.91416 -40.20971 -38.69812 -38.30218 -36.15485 -35.78955 -34.79299 -33.24820 -32.24192 -30.57443 -29.76635 -28.33207 -27.47381 -26.46350 -25.22608 -23.95503 -22.71125 -21.68349 -21.24167 -20.66614 -19.81410 -19.64659 -18.69586 -17.95405 -17.66024 -17.16613 -16.84584 -16.76553 -16.55449 -16.17195 -15.88847 -15.62290 -15.52462 -15.28823 -15.13810 -15.05943 -14.59047 -14.40259 -13.88333 -13.82320 -13.59409 -13.45171 -13.33289 -13.15338 -13.11723 -12.94167 -12.73559 -12.43556 -12.38061 -12.28899 -12.13527 -11.70407 -11.56940 -11.42808 -11.12929 -10.93650 -10.26325 -10.21870 -9.97177 -9.57277 -9.25661 -8.45099 -5.92759 0.06361 1.15083 1.39506 1.42124 1.51569 1.51826 2.04293 2.09688 2.22031 2.28530 2.72124 2.75060 3.22571 3.40650 3.44585 3.64127 3.67993 3.98934 4.02017 4.15366 4.20488 4.32882 4.34989 4.39416 4.52866 4.53556 4.56703 4.61505 4.69145 4.76384 4.77662 4.93036 4.99990 5.16011 5.27449 5.33826 5.34030 5.42724 5.49782 5.86660 6.05473 6.17375 6.33455 6.56953 6.63336 6.67306 7.02243 7.15899 7.60721 8.16448 8.71982 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.002929 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.112051 B = 9558.902130 C =11141.359546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.077 0.923 4 C 0.125 3.875 5 N -0.709 5.709 6 C 0.596 3.404 7 O -0.562 6.562 8 C -0.099 4.099 9 C 0.076 3.924 10 N -0.519 5.519 11 C 0.407 3.593 12 O -0.442 6.442 13 N -0.439 5.439 14 C 0.053 3.947 15 N -0.524 5.524 16 C 0.029 3.971 17 C 0.055 3.945 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.575 5.575 21 C -0.329 4.329 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.987 3.013 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.275 1.275 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.409 0.591 35 H 0.200 0.800 36 H 0.429 0.571 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.033 0.967 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.395 0.605 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 -1.832 17.080 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.042 4.042 3 H 0.095 0.905 4 C 0.002 3.998 5 N -0.365 5.365 6 C 0.383 3.617 7 O -0.442 6.442 8 C -0.214 4.214 9 C -0.079 4.079 10 N -0.248 5.248 11 C 0.107 3.893 12 O -0.246 6.246 13 N -0.135 5.135 14 C -0.089 4.089 15 N -0.249 5.249 16 C -0.119 4.119 17 C -0.076 4.076 18 C 0.231 3.769 19 O -0.498 6.498 20 N -0.213 5.213 21 C -0.459 4.459 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.562 5.562 25 Si 0.811 3.189 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.200 1.200 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.251 0.749 35 H 0.217 0.783 36 H 0.291 0.709 37 H 0.100 0.900 38 H 0.146 0.854 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.136 0.864 44 H 0.083 0.917 45 H 0.229 0.771 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.311 -3.397 17.410 18.827 hybrid contribution -0.234 1.278 -1.682 2.125 sum -6.545 -2.119 15.728 17.167 Atomic orbital electron populations 1.21933 0.92284 1.02676 1.03488 1.22101 0.97491 0.96656 0.87973 0.90522 1.21570 1.00142 0.80225 0.97897 1.46281 1.51759 1.10128 1.28376 1.16750 0.79183 0.83349 0.82394 1.90832 1.41889 1.77870 1.33617 1.21018 1.07669 0.94713 0.97952 1.22754 0.99812 0.85573 0.99725 1.70372 1.15008 1.28501 1.10932 1.20383 0.98021 0.79256 0.91683 1.84822 1.32983 1.52067 1.54759 1.45987 1.35926 1.07532 1.24011 1.22563 0.98870 0.99621 0.87804 1.61611 1.13811 1.48787 1.00696 1.22357 0.87374 0.99782 1.02401 1.21808 1.03569 0.94269 0.87982 1.20764 0.82960 0.88438 0.84750 1.90478 1.49682 1.23352 1.86316 1.41926 1.56728 1.17925 1.04717 1.19578 1.40805 1.00289 0.85229 0.90370 1.25940 0.96521 0.97552 1.01079 1.69654 1.43781 1.17654 1.25091 0.85074 0.78635 0.78069 0.77110 1.19675 1.19704 1.20023 0.89646 0.91459 0.92474 0.89116 0.91821 0.74855 0.78343 0.70901 0.89984 0.85387 0.88018 0.91814 0.92711 0.94878 0.86390 0.91668 0.77097 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.97 71.99 0.65 -1.44 16 2 C 0.07 1.19 2.33 44.92 0.10 1.30 16 3 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 4 C 0.13 2.43 4.55 86.38 0.39 2.82 16 5 N -0.71 -15.36 4.87 -467.35 -2.27 -17.64 16 6 C 0.60 15.50 7.77 86.36 0.67 16.17 16 7 O -0.56 -17.49 16.91 -4.47 -0.08 -17.57 16 8 C -0.10 -2.46 6.92 39.80 0.28 -2.19 16 9 C 0.08 1.92 11.64 84.13 0.98 2.90 16 10 N -0.52 -13.68 11.22 -313.65 -3.52 -17.20 16 11 C 0.41 9.20 9.00 179.99 1.62 10.82 16 12 O -0.44 -7.40 13.42 -84.83 -1.14 -8.54 16 13 N -0.44 -9.39 3.20 -652.01 -2.09 -11.48 16 14 C 0.05 0.85 9.67 127.77 1.24 2.09 16 15 N -0.52 -13.74 3.93 -901.61 -3.55 -17.28 16 16 C 0.03 0.86 8.43 127.69 1.08 1.93 16 17 C 0.05 1.60 5.31 85.56 0.45 2.06 16 18 C 0.44 19.11 7.42 87.66 0.65 19.76 16 19 O -0.61 -30.88 13.97 -3.05 -0.04 -30.93 16 20 N -0.58 -27.57 5.29 -306.98 -1.62 -29.19 16 21 C -0.33 -17.86 9.68 84.04 0.81 -17.05 16 22 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -48.05 13.05 21.66 0.28 -47.77 16 25 Si 0.99 41.76 29.55 68.60 2.03 43.79 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.98 6.32 -2.39 -0.02 0.96 16 31 H 0.06 0.83 6.90 -2.38 -0.02 0.82 16 32 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.06 1.40 6.69 -2.39 -0.02 1.39 16 34 H 0.41 8.34 3.03 -92.71 -0.28 8.06 16 35 H 0.20 4.33 8.06 -2.91 -0.02 4.30 16 36 H 0.43 2.03 9.06 -74.06 -0.67 1.36 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.13 1.32 8.00 -2.39 -0.02 1.30 16 39 H 0.10 1.37 5.94 -2.39 -0.01 1.36 16 40 H 0.06 1.85 6.49 -2.39 -0.02 1.83 16 41 H 0.05 2.09 5.79 -2.39 -0.01 2.08 16 42 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 43 H 0.12 2.89 6.02 -2.39 -0.01 2.88 16 44 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 45 H 0.40 18.03 7.90 -92.71 -0.73 17.29 16 46 H 0.28 13.62 8.31 -92.70 -0.77 12.85 16 Total: -1.00 -74.45 378.39 -3.23 -77.68 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.62 Total: 37.07 kcal Atomic # 6 Polarization: 29.67 SS G_CDS: 9.39 Total: 39.06 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -12.77 Total: -140.56 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: -1.26 Total: -57.04 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -74.45 -3.23 -77.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700472341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.819 kcal (2) G-P(sol) polarization free energy of solvation -74.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds