Wall clock time and date at job start Tue Mar 31 2020 22:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 N 1.46500 * 109.46880 * 239.99934 * 2 1 3 5 5 C 1.34769 * 120.00200 * 85.00184 * 4 2 1 6 6 O 1.21283 * 119.99929 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00479 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47434 * 180.02562 * 7 5 4 9 9 C 1.39358 * 119.47064 * 89.99915 * 8 7 5 10 10 C 1.36130 * 120.86879 * 179.97438 * 9 8 7 11 11 C 1.40422 * 119.61599 * 0.02562 * 10 9 8 12 12 C 1.40774 * 121.37391 * 180.02562 * 11 10 9 13 13 C 1.36580 * 118.15095 * 179.97438 * 12 11 10 14 14 C 1.39331 * 119.93250 * 359.97438 * 13 12 11 15 15 N 1.31086 * 121.75125 * 0.02562 * 14 13 12 16 16 C 1.33683 * 121.32205 * 359.96477 * 15 14 13 17 17 C 1.36080 * 119.46264 * 269.72403 * 8 7 5 18 18 C 1.53008 * 109.46911 * 120.00316 * 2 1 3 19 19 C 1.53497 * 114.20384 * 299.99367 * 18 2 1 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08001 * 120.00168 * 7.92391 * 21 20 19 23 23 C 1.38807 * 120.00154 * 187.92753 * 21 20 19 24 24 N 1.31620 * 120.00181 * 195.15567 * 23 21 20 25 25 Si 1.86800 * 119.99868 * 15.15620 * 23 21 20 26 26 H 1.48503 * 109.47270 * 270.00075 * 25 23 21 27 27 H 1.48502 * 109.47339 * 30.00381 * 25 23 21 28 28 H 1.48506 * 109.47014 * 149.99865 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09006 * 109.46761 * 299.99985 * 1 2 3 31 31 H 1.08995 * 109.46842 * 59.99566 * 1 2 3 32 32 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99931 * 265.00113 * 4 2 1 34 34 H 1.09005 * 109.47323 * 299.99824 * 7 5 4 35 35 H 1.09000 * 109.46903 * 59.99764 * 7 5 4 36 36 H 1.08005 * 119.56300 * 359.95880 * 9 8 7 37 37 H 1.08001 * 120.19358 * 179.97438 * 10 9 8 38 38 H 1.08000 * 120.92716 * 359.95323 * 12 11 10 39 39 H 1.08003 * 120.03333 * 180.02562 * 13 12 11 40 40 H 1.08003 * 119.12282 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.12555 * 0.02562 * 17 8 7 42 42 H 1.09008 * 113.41028 * 166.80073 * 18 2 1 43 43 H 1.08996 * 113.46841 * 332.74047 * 19 18 2 44 44 H 1.08998 * 113.51535 * 202.31022 * 19 18 2 45 45 H 0.97002 * 120.00096 * 354.91189 * 24 23 21 46 46 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 47 47 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6487 -0.7289 -3.5877 8 6 2.7002 0.2396 -4.7411 9 6 3.8633 0.9723 -4.9698 10 6 3.9412 1.8546 -6.0036 11 6 2.8353 2.0298 -6.8511 12 6 2.8754 2.9316 -7.9313 13 6 1.7622 3.0497 -8.7138 14 6 0.6302 2.2880 -8.4318 15 7 0.5964 1.4491 -7.4250 16 6 1.6517 1.2859 -6.6207 17 6 1.6119 0.3804 -5.5459 18 6 2.0400 -0.7214 1.2493 19 6 1.5899 -0.0846 2.5714 20 7 0.3745 -0.9091 2.4946 21 6 -0.9129 -0.8126 2.9512 22 1 -1.2551 0.1019 3.4126 23 6 -1.7781 -1.8901 2.8209 24 7 -3.0736 -1.7165 2.9761 25 14 -1.1040 -3.5868 2.4255 26 1 -1.0532 -3.7683 0.9525 27 1 0.2639 -3.7194 2.9881 28 1 -1.9868 -4.6215 3.0217 29 6 1.1519 -1.8859 1.7172 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.6479 -1.1215 -3.3987 35 1 1.9758 -1.5506 -3.8325 36 1 4.7141 0.8386 -4.3181 37 1 4.8479 2.4170 -6.1706 38 1 3.7616 3.5142 -8.1354 39 1 1.7598 3.7322 -9.5509 40 1 -0.2427 2.3914 -9.0594 41 1 0.7197 -0.1981 -5.3572 42 1 3.1026 -0.9610 1.2076 43 1 1.3946 0.9849 2.4938 44 1 2.2319 -0.3356 3.4158 45 1 -3.4174 -0.8529 3.2536 46 1 1.6789 -2.6124 2.3358 47 1 0.5834 -2.3510 0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700540692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:41 Heat of formation + Delta-G solvation = 84.053005 kcal Electronic energy + Delta-G solvation = -28448.667477 eV Core-core repulsion = 24598.544517 eV Total energy + Delta-G solvation = -3850.122960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.08157 -40.02275 -38.86116 -37.36061 -34.56035 -33.88026 -32.47334 -32.23335 -30.38164 -30.02868 -28.04739 -27.68803 -25.36660 -24.40134 -23.99586 -23.07503 -22.32240 -21.19357 -20.20014 -18.97741 -18.10390 -17.46953 -17.23358 -17.04792 -16.92296 -15.88636 -15.33233 -15.05326 -14.91384 -14.71589 -14.60742 -14.48713 -14.05708 -13.76470 -13.56468 -13.29359 -13.27497 -13.16367 -12.66477 -12.19241 -11.90290 -11.79769 -11.70981 -11.63387 -11.59610 -11.28664 -11.17936 -10.77065 -10.74746 -10.52321 -10.30105 -10.08974 -9.76360 -9.70999 -9.41313 -9.15922 -8.88838 -8.79981 -8.63210 -8.44307 -7.12250 -6.28468 -3.20587 0.18110 0.58102 1.78695 2.63629 2.75734 3.36310 3.37930 3.45825 3.60579 3.92522 4.02343 4.31316 4.40705 4.55261 4.58824 4.61732 4.75456 4.77953 4.82658 4.94135 5.01382 5.04425 5.14842 5.20518 5.23152 5.34664 5.44756 5.56881 5.68104 5.69442 5.73768 5.86393 5.90056 6.04620 6.11609 6.21413 6.24287 6.26267 6.31982 6.32574 6.38603 6.49569 6.60570 6.62590 6.80920 6.97206 7.14109 7.33015 7.68074 7.70400 8.25686 8.37548 8.98943 9.52376 10.39208 11.21138 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002303 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.693460 B =12154.027986 C =12721.733739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.172 3.828 3 H 0.082 0.918 4 N -0.722 5.722 5 C 0.513 3.487 6 O -0.534 6.534 7 C -0.108 4.108 8 C -0.042 4.042 9 C -0.096 4.096 10 C -0.100 4.100 11 C -0.103 4.103 12 C -0.058 4.058 13 C -0.180 4.180 14 C 0.127 3.873 15 N -0.472 5.472 16 C 0.130 3.870 17 C -0.079 4.079 18 C -0.145 4.145 19 C 0.126 3.874 20 N -0.619 5.619 21 C -0.300 4.300 22 H 0.081 0.919 23 C -0.023 4.023 24 N -0.932 5.932 25 Si 1.061 2.939 26 H -0.294 1.294 27 H -0.283 1.283 28 H -0.297 1.297 29 C 0.104 3.896 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.158 0.842 41 H 0.135 0.865 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.038 0.962 45 H 0.261 0.739 46 H 0.044 0.956 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.018 4.547 -21.976 28.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.069 3.931 3 H 0.100 0.900 4 N -0.373 5.373 5 C 0.298 3.702 6 O -0.410 6.410 7 C -0.148 4.148 8 C -0.044 4.044 9 C -0.114 4.114 10 C -0.118 4.118 11 C -0.105 4.105 12 C -0.084 4.084 13 C -0.200 4.200 14 C -0.046 4.046 15 N -0.180 5.180 16 C 0.009 3.991 17 C -0.097 4.097 18 C -0.165 4.165 19 C 0.000 4.000 20 N -0.347 5.347 21 C -0.426 4.426 22 H 0.099 0.901 23 C -0.222 4.222 24 N -0.575 5.575 25 Si 0.893 3.107 26 H -0.222 1.222 27 H -0.209 1.209 28 H -0.225 1.225 29 C -0.022 4.022 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.175 0.825 41 H 0.153 0.847 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.366 3.328 -21.955 27.585 hybrid contribution 1.292 1.544 0.414 2.055 sum 17.658 4.873 -21.541 28.276 Atomic orbital electron populations 1.22153 0.93119 1.03109 1.02001 1.20604 0.95505 0.95610 0.81376 0.90015 1.46174 1.67162 1.13985 1.10016 1.20342 0.78137 0.87476 0.84202 1.90736 1.49557 1.15984 1.84763 1.20780 1.04371 0.98110 0.91530 1.19033 0.93742 0.96821 0.94809 1.20774 0.97639 0.95766 0.97209 1.20892 0.97429 0.98531 0.94981 1.18846 0.95568 0.98661 0.97437 1.21466 0.98672 0.95473 0.92804 1.21871 0.94622 1.01863 1.01609 1.22963 0.97504 0.90758 0.93366 1.68041 1.27827 1.17883 1.04211 1.18813 0.89189 0.95966 0.95145 1.20633 0.98364 0.97572 0.93149 1.23238 0.98241 0.99647 0.95328 1.22323 0.88577 0.96347 0.92799 1.46296 1.05057 1.20693 1.62667 1.20061 0.83117 1.00404 1.39003 0.90142 1.25702 0.94215 1.02276 1.00054 1.70891 1.10927 1.27322 1.48321 0.83802 0.74627 0.76347 0.75967 1.22223 1.20905 1.22456 1.22765 0.92044 0.92954 0.94434 0.89067 0.94674 0.92225 0.76875 0.87640 0.87539 0.85505 0.85210 0.84515 0.84628 0.82475 0.84713 0.90506 0.93499 0.94442 0.92835 0.93886 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.06 37.16 0.30 -2.62 16 2 C 0.17 2.82 2.76 -67.92 -0.19 2.63 16 3 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 4 N -0.72 -9.51 5.08 -53.80 -0.27 -9.78 16 5 C 0.51 7.00 7.79 -10.99 -0.09 6.91 16 6 O -0.53 -9.65 15.70 5.56 0.09 -9.57 16 7 C -0.11 -1.01 5.80 -29.04 -0.17 -1.18 16 8 C -0.04 -0.47 4.34 -104.98 -0.46 -0.92 16 9 C -0.10 -0.95 9.59 -39.92 -0.38 -1.33 16 10 C -0.10 -0.95 9.77 -39.52 -0.39 -1.33 16 11 C -0.10 -1.13 5.74 -106.80 -0.61 -1.75 16 12 C -0.06 -0.49 9.90 -39.22 -0.39 -0.88 16 13 C -0.18 -1.38 10.03 -39.77 -0.40 -1.78 16 14 C 0.13 1.21 11.15 -17.46 -0.19 1.01 16 15 N -0.47 -6.11 10.34 -10.97 -0.11 -6.23 16 16 C 0.13 1.70 6.60 -84.86 -0.56 1.14 16 17 C -0.08 -1.00 9.58 -39.47 -0.38 -1.38 16 18 C -0.14 -2.30 4.25 -89.97 -0.38 -2.69 16 19 C 0.13 2.36 7.86 -8.50 -0.07 2.30 16 20 N -0.62 -14.28 2.02 -184.60 -0.37 -14.66 16 21 C -0.30 -8.27 9.87 -15.06 -0.15 -8.42 16 22 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 23 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 24 N -0.93 -29.10 13.70 55.49 0.76 -28.34 16 25 Si 1.06 26.01 25.51 -169.99 -4.34 21.67 16 26 H -0.29 -6.88 6.97 56.52 0.39 -6.49 16 27 H -0.28 -6.39 5.66 56.52 0.32 -6.07 16 28 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 29 C 0.10 2.02 4.60 -8.37 -0.04 1.98 16 30 H 0.09 2.08 5.93 -51.93 -0.31 1.77 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.29 6.31 -51.93 -0.33 0.96 16 33 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 34 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.11 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 43 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 46 H 0.04 0.83 7.02 -51.93 -0.36 0.46 16 47 H 0.05 1.07 4.82 -51.93 -0.25 0.82 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -36.02 379.34 -9.89 -45.91 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.72 Total: 4.35 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -4.63 Total: -9.08 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.00 Total: -59.00 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -4.34 Total: 21.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.02 -9.89 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700540692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.964 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds