Wall clock time and date at job start Tue Mar 31 2020 22:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 N 1.46500 * 109.46880 * 239.99934 * 2 1 3 5 5 C 1.34769 * 120.00200 * 85.00184 * 4 2 1 6 6 O 1.21283 * 119.99929 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00479 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47434 * 180.02562 * 7 5 4 9 9 C 1.39358 * 119.47064 * 89.99915 * 8 7 5 10 10 C 1.36130 * 120.86879 * 179.97438 * 9 8 7 11 11 C 1.40422 * 119.61599 * 0.02562 * 10 9 8 12 12 C 1.40774 * 121.37391 * 180.02562 * 11 10 9 13 13 C 1.36580 * 118.15095 * 179.97438 * 12 11 10 14 14 C 1.39331 * 119.93250 * 359.97438 * 13 12 11 15 15 N 1.31086 * 121.75125 * 0.02562 * 14 13 12 16 16 C 1.33683 * 121.32205 * 359.96477 * 15 14 13 17 17 C 1.36080 * 119.46264 * 269.72403 * 8 7 5 18 18 C 1.53008 * 109.46911 * 120.00316 * 2 1 3 19 19 C 1.53497 * 114.20384 * 299.99367 * 18 2 1 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08001 * 120.00168 * 7.92391 * 21 20 19 23 23 C 1.38807 * 120.00154 * 187.92753 * 21 20 19 24 24 N 1.31620 * 120.00181 * 195.15567 * 23 21 20 25 25 Si 1.86800 * 119.99868 * 15.15620 * 23 21 20 26 26 H 1.48503 * 109.47270 * 270.00075 * 25 23 21 27 27 H 1.48502 * 109.47339 * 30.00381 * 25 23 21 28 28 H 1.48506 * 109.47014 * 149.99865 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09006 * 109.46761 * 299.99985 * 1 2 3 31 31 H 1.08995 * 109.46842 * 59.99566 * 1 2 3 32 32 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99931 * 265.00113 * 4 2 1 34 34 H 1.09005 * 109.47323 * 299.99824 * 7 5 4 35 35 H 1.09000 * 109.46903 * 59.99764 * 7 5 4 36 36 H 1.08005 * 119.56300 * 359.95880 * 9 8 7 37 37 H 1.08001 * 120.19358 * 179.97438 * 10 9 8 38 38 H 1.08000 * 120.92716 * 359.95323 * 12 11 10 39 39 H 1.08003 * 120.03333 * 180.02562 * 13 12 11 40 40 H 1.08003 * 119.12282 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.12555 * 0.02562 * 17 8 7 42 42 H 1.09008 * 113.41028 * 166.80073 * 18 2 1 43 43 H 1.08996 * 113.46841 * 332.74047 * 19 18 2 44 44 H 1.08998 * 113.51535 * 202.31022 * 19 18 2 45 45 H 0.97002 * 120.00096 * 354.91189 * 24 23 21 46 46 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 47 47 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6487 -0.7289 -3.5877 8 6 2.7002 0.2396 -4.7411 9 6 3.8633 0.9723 -4.9698 10 6 3.9412 1.8546 -6.0036 11 6 2.8353 2.0298 -6.8511 12 6 2.8754 2.9316 -7.9313 13 6 1.7622 3.0497 -8.7138 14 6 0.6302 2.2880 -8.4318 15 7 0.5964 1.4491 -7.4250 16 6 1.6517 1.2859 -6.6207 17 6 1.6119 0.3804 -5.5459 18 6 2.0400 -0.7214 1.2493 19 6 1.5899 -0.0846 2.5714 20 7 0.3745 -0.9091 2.4946 21 6 -0.9129 -0.8126 2.9512 22 1 -1.2551 0.1019 3.4126 23 6 -1.7781 -1.8901 2.8209 24 7 -3.0736 -1.7165 2.9761 25 14 -1.1040 -3.5868 2.4255 26 1 -1.0532 -3.7683 0.9525 27 1 0.2639 -3.7194 2.9881 28 1 -1.9868 -4.6215 3.0217 29 6 1.1519 -1.8859 1.7172 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.6479 -1.1215 -3.3987 35 1 1.9758 -1.5506 -3.8325 36 1 4.7141 0.8386 -4.3181 37 1 4.8479 2.4170 -6.1706 38 1 3.7616 3.5142 -8.1354 39 1 1.7598 3.7322 -9.5509 40 1 -0.2427 2.3914 -9.0594 41 1 0.7197 -0.1981 -5.3572 42 1 3.1026 -0.9610 1.2076 43 1 1.3946 0.9849 2.4938 44 1 2.2319 -0.3356 3.4158 45 1 -3.4174 -0.8529 3.2536 46 1 1.6789 -2.6124 2.3358 47 1 0.5834 -2.3510 0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700540692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:40 Heat of formation + Delta-G solvation = 59.425592 kcal Electronic energy + Delta-G solvation = -28449.735401 eV Core-core repulsion = 24598.544517 eV Total energy + Delta-G solvation = -3851.190884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.83748 -41.30298 -40.15858 -38.16872 -35.91939 -34.61471 -34.45637 -33.12161 -31.43388 -31.04446 -29.82724 -28.63528 -26.91805 -25.70834 -25.00266 -24.02090 -23.12178 -22.73281 -21.34807 -20.53000 -19.36756 -18.79651 -18.08860 -17.91514 -17.79748 -17.16516 -16.92726 -16.34036 -16.10741 -15.72706 -15.43535 -15.33556 -15.33271 -15.21358 -14.86900 -14.70605 -14.09413 -13.90269 -13.83094 -13.45845 -13.38477 -13.06020 -12.99064 -12.85598 -12.59436 -12.54661 -12.41207 -12.27521 -12.15251 -11.84616 -11.78933 -11.49547 -11.34420 -11.04738 -10.81038 -10.69025 -10.44439 -10.04431 -9.63026 -9.19670 -9.09623 -8.54594 -5.37433 -0.52029 -0.14797 1.05028 1.40390 1.53654 1.67821 1.70098 1.89021 2.34071 2.59474 3.12409 3.15842 3.23625 3.32405 3.55937 3.62889 3.69862 3.81748 3.91314 4.00639 4.05287 4.13393 4.21152 4.26933 4.34865 4.47307 4.53069 4.58348 4.61536 4.64455 4.71937 4.75210 4.81837 4.88238 4.88586 5.01927 5.02392 5.07183 5.09953 5.15913 5.30205 5.38168 5.41111 5.51227 5.51789 5.64081 5.65526 5.92974 6.02564 6.65570 6.77049 6.97746 7.34782 7.41807 8.36873 8.96760 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002303 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.693460 B =12154.027986 C =12721.733739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.182 3.818 3 H 0.076 0.924 4 N -0.711 5.711 5 C 0.513 3.487 6 O -0.583 6.583 7 C -0.098 4.098 8 C -0.046 4.046 9 C -0.110 4.110 10 C -0.096 4.096 11 C -0.125 4.125 12 C -0.058 4.058 13 C -0.177 4.177 14 C 0.118 3.882 15 N -0.519 5.519 16 C 0.098 3.902 17 C -0.113 4.113 18 C -0.110 4.110 19 C 0.120 3.880 20 N -0.651 5.651 21 C -0.273 4.273 22 H 0.041 0.959 23 C -0.089 4.089 24 N -0.976 5.976 25 Si 1.100 2.900 26 H -0.278 1.278 27 H -0.245 1.245 28 H -0.312 1.312 29 C 0.097 3.903 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.042 0.958 33 H 0.417 0.583 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.243 0.757 46 H 0.065 0.935 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.024 3.899 -23.866 33.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.077 3.923 3 H 0.094 0.906 4 N -0.363 5.363 5 C 0.301 3.699 6 O -0.463 6.463 7 C -0.138 4.138 8 C -0.048 4.048 9 C -0.128 4.128 10 C -0.114 4.114 11 C -0.127 4.127 12 C -0.084 4.084 13 C -0.197 4.197 14 C -0.054 4.054 15 N -0.228 5.228 16 C -0.022 4.022 17 C -0.132 4.132 18 C -0.129 4.129 19 C -0.005 4.005 20 N -0.380 5.380 21 C -0.401 4.401 22 H 0.059 0.941 23 C -0.280 4.280 24 N -0.622 5.622 25 Si 0.926 3.074 26 H -0.204 1.204 27 H -0.169 1.169 28 H -0.240 1.240 29 C -0.027 4.027 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.254 0.746 34 H 0.166 0.834 35 H 0.141 0.859 36 H 0.171 0.829 37 H 0.180 0.820 38 H 0.190 0.810 39 H 0.191 0.809 40 H 0.198 0.802 41 H 0.137 0.863 42 H 0.148 0.852 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 21.459 2.671 -23.859 32.200 hybrid contribution -0.259 1.965 0.919 2.184 sum 21.199 4.636 -22.940 31.578 Atomic orbital electron populations 1.21957 0.96534 1.01034 0.99540 1.20267 0.92478 0.96154 0.83367 0.90593 1.45955 1.66590 1.14816 1.08921 1.21065 0.76867 0.86946 0.85056 1.90726 1.51610 1.18452 1.85498 1.20834 1.06905 0.97527 0.88486 1.19288 0.93689 0.97101 0.94716 1.21126 0.97965 0.95741 0.97937 1.21327 0.97953 0.98062 0.94067 1.19195 0.95378 0.99257 0.98873 1.21935 1.00132 0.94718 0.91626 1.22268 0.93561 1.01554 1.02302 1.23559 0.99230 0.89990 0.92601 1.68015 1.28818 1.20058 1.05892 1.19111 0.90385 0.97034 0.95705 1.20723 0.98809 0.98884 0.94751 1.23014 1.00361 0.96574 0.92994 1.22595 0.86893 0.95713 0.95330 1.46315 1.04969 1.23381 1.63311 1.19794 0.85822 0.98358 1.36076 0.94149 1.27036 0.93802 1.06152 1.01054 1.71016 1.12726 1.26367 1.52136 0.83363 0.75590 0.71578 0.76887 1.20449 1.16882 1.24039 1.23026 0.91905 0.93769 0.94003 0.92637 0.96053 0.93935 0.74632 0.83364 0.85902 0.82882 0.81955 0.81000 0.80904 0.80171 0.86297 0.85178 0.94262 0.91922 0.94829 0.91702 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.06 71.98 0.58 -4.82 16 2 C 0.18 5.59 2.76 45.00 0.12 5.71 16 3 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 4 N -0.71 -16.50 5.08 -442.53 -2.25 -18.75 16 5 C 0.51 12.96 7.79 87.66 0.68 13.65 16 6 O -0.58 -20.88 15.70 -3.04 -0.05 -20.93 16 7 C -0.10 -1.58 5.80 29.10 0.17 -1.41 16 8 C -0.05 -0.97 4.34 -20.10 -0.09 -1.06 16 9 C -0.11 -1.93 9.59 22.05 0.21 -1.72 16 10 C -0.10 -1.60 9.77 22.31 0.22 -1.38 16 11 C -0.13 -2.62 5.74 -21.28 -0.12 -2.74 16 12 C -0.06 -0.84 9.90 22.50 0.22 -0.62 16 13 C -0.18 -2.34 10.03 22.14 0.22 -2.11 16 14 C 0.12 2.20 11.15 85.07 0.95 3.15 16 15 N -0.52 -14.06 10.34 -188.63 -1.95 -16.01 16 16 C 0.10 2.64 6.60 40.29 0.27 2.91 16 17 C -0.11 -3.00 9.58 22.34 0.21 -2.79 16 18 C -0.11 -3.04 4.25 -10.37 -0.04 -3.09 16 19 C 0.12 4.19 7.86 83.18 0.65 4.85 16 20 N -0.65 -29.43 2.02 -737.94 -1.49 -30.92 16 21 C -0.27 -15.54 9.87 84.03 0.83 -14.71 16 22 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 23 C -0.09 -5.32 5.50 84.86 0.47 -4.85 16 24 N -0.98 -64.12 13.70 21.65 0.30 -63.82 16 25 Si 1.10 52.15 25.51 68.60 1.75 53.90 16 26 H -0.28 -12.27 6.97 99.48 0.69 -11.58 16 27 H -0.24 -9.95 5.66 99.48 0.56 -9.39 16 28 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 29 C 0.10 3.43 4.60 83.26 0.38 3.81 16 30 H 0.05 2.64 5.93 -2.38 -0.01 2.62 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 1.85 6.31 -2.39 -0.02 1.83 16 33 H 0.42 6.68 8.60 -92.71 -0.80 5.88 16 34 H 0.15 1.12 8.08 -2.38 -0.02 1.11 16 35 H 0.12 1.60 8.07 -2.39 -0.02 1.58 16 36 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.12 3.28 8.06 -2.91 -0.02 3.25 16 42 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.24 16.15 8.73 -92.71 -0.81 15.34 16 46 H 0.07 2.10 7.02 -2.38 -0.02 2.08 16 47 H 0.05 1.76 4.82 -2.39 -0.01 1.75 16 Total: -1.00 -87.30 379.34 2.25 -85.05 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.00 Total: 18.70 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 5.94 Total: -7.22 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -5.39 Total: -129.50 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 1.75 Total: 53.90 kcal Total: -87.30 2.25 -85.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700540692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.477 kcal (2) G-P(sol) polarization free energy of solvation -87.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds