Wall clock time and date at job start Tue Mar 31 2020 22:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.00154 * 2 1 4 4 C 1.54325 * 109.88305 * 238.89904 * 2 1 3 5 5 C 1.55151 * 102.94388 * 262.77456 * 4 2 1 6 6 H 1.09006 * 111.00303 * 82.57587 * 5 4 2 7 7 N 1.46499 * 111.00467 * 206.38246 * 5 4 2 8 8 C 1.36939 * 120.00309 * 205.00380 * 7 5 4 9 9 H 1.07998 * 120.00049 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00037 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99753 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 119.99954 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47149 * 90.00709 * 12 10 8 14 14 H 1.48500 * 109.46980 * 210.00358 * 12 10 8 15 15 H 1.48499 * 109.47560 * 330.00640 * 12 10 8 16 16 C 1.55128 * 101.49064 * 324.33565 * 5 4 2 17 17 N 1.47026 * 109.88192 * 121.09629 * 2 1 3 18 18 C 1.34784 * 125.64491 * 300.43926 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.72909 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47004 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47542 * 179.97438 * 21 20 18 23 23 N 1.46497 * 109.47339 * 179.97438 * 22 21 20 24 24 C 1.36369 * 125.96636 * 269.69319 * 23 22 21 25 25 O 1.35629 * 125.98609 * 0.03201 * 24 23 22 26 26 N 1.30902 * 108.02354 * 179.88890 * 24 23 22 27 27 N 1.40118 * 107.94054 * 0.37300 * 26 24 23 28 28 C 1.30902 * 107.93927 * 359.76407 * 27 26 24 29 29 O 1.35631 * 125.98891 * 180.02562 * 28 27 26 30 30 H 1.08996 * 109.47377 * 300.35602 * 1 2 3 31 31 H 1.09005 * 109.46800 * 60.36353 * 1 2 3 32 32 H 1.09001 * 109.47068 * 180.35605 * 1 2 3 33 33 H 1.08996 * 110.72050 * 21.14243 * 4 2 1 34 34 H 1.09003 * 110.71764 * 144.23355 * 4 2 1 35 35 H 0.97001 * 119.99820 * 25.00677 * 7 5 4 36 36 H 0.96998 * 120.00128 * 179.97438 * 11 10 8 37 37 H 1.09001 * 110.49467 * 278.45549 * 16 5 4 38 38 H 1.09000 * 110.34263 * 156.05799 * 16 5 4 39 39 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 40 40 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 41 41 H 1.08997 * 109.47244 * 300.00535 * 21 20 18 42 42 H 1.09002 * 109.46787 * 59.99910 * 21 20 18 43 43 H 1.08997 * 109.47365 * 300.00556 * 22 21 20 44 44 H 1.09004 * 109.46747 * 59.99765 * 22 21 20 45 45 H 0.96705 * 113.99399 * 90.00300 * 25 24 23 46 46 H 0.96698 * 113.99644 * 269.97720 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2426 5 6 2.3519 -2.1695 -0.6922 6 1 1.4452 -2.7737 -0.6603 7 7 3.3930 -2.8317 -1.4820 8 6 3.4558 -4.1990 -1.5231 9 1 2.7380 -4.7893 -0.9728 10 6 4.4427 -4.8264 -2.2710 11 7 4.5033 -6.1406 -2.3100 12 14 5.6846 -3.8054 -3.2221 13 1 6.8618 -3.5290 -2.3603 14 1 6.1195 -4.5533 -4.4291 15 1 5.0598 -2.5225 -3.6331 16 6 2.8613 -1.8466 0.7370 17 7 2.0300 -0.7141 1.1839 18 6 1.7753 -0.3844 2.4658 19 8 1.0828 0.5787 2.7181 20 6 2.3555 -1.2094 3.5854 21 6 1.9170 -0.6250 4.9297 22 6 2.5054 -1.4629 6.0666 23 7 2.0860 -0.9028 7.3537 24 6 2.7556 0.0437 8.0716 25 8 3.9257 0.6318 7.7187 26 7 2.0694 0.2876 9.1594 27 7 0.9320 -0.5305 9.1446 28 6 0.9609 -1.2415 8.0459 29 8 0.0340 -2.1545 7.6628 30 1 -0.3634 0.5193 0.8867 31 1 -0.3633 0.5082 -0.8933 32 1 -0.3633 -1.0277 0.0064 33 1 1.2918 -0.7892 -2.0200 34 1 2.9639 -0.2814 -1.6201 35 1 4.0380 -2.3015 -1.9759 36 1 5.1926 -6.5790 -2.8329 37 1 3.9123 -1.5588 0.7116 38 1 2.7177 -2.7049 1.3934 39 1 1.9999 -2.2365 3.5020 40 1 3.4435 -1.1953 3.5212 41 1 2.2728 0.4019 5.0129 42 1 0.8289 -0.6387 4.9943 43 1 2.1492 -2.4896 5.9832 44 1 3.5935 -1.4495 6.0021 45 1 3.8186 1.4377 7.1950 46 1 0.2148 -3.0524 7.9729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700838829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:48 Heat of formation + Delta-G solvation = -8.446047 kcal Electronic energy + Delta-G solvation = -29364.208620 eV Core-core repulsion = 25099.225337 eV Total energy + Delta-G solvation = -4264.983283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61926 -40.23299 -38.55314 -37.85848 -37.46134 -35.98479 -34.45079 -32.95298 -31.75681 -31.46188 -29.93612 -28.96146 -27.49745 -25.67023 -24.01387 -23.23315 -23.12717 -22.16637 -21.45262 -20.35187 -19.31363 -19.12375 -18.76256 -17.88409 -17.27429 -17.04955 -16.62450 -16.19878 -15.79903 -15.57112 -15.27058 -14.54392 -14.40519 -14.11222 -13.81342 -13.52624 -13.40964 -13.24981 -12.96303 -12.89899 -12.82550 -12.74703 -12.55944 -12.22335 -12.04704 -11.97442 -11.65873 -11.60370 -11.34821 -11.20171 -10.95590 -10.86822 -10.78139 -10.48056 -10.39033 -10.18400 -9.83799 -9.80141 -9.76493 -9.17203 -8.57257 -7.52600 -5.96229 -3.35045 1.15565 1.35999 1.86895 2.60713 2.85541 2.95140 3.23412 3.25923 3.33028 3.41765 4.01232 4.18728 4.41321 4.50375 4.61741 4.68465 4.83245 4.86969 4.90289 4.92132 5.01032 5.05637 5.19501 5.23821 5.27678 5.38824 5.42701 5.59618 5.63161 5.65942 5.72202 5.76074 5.77997 5.90417 5.97667 6.06408 6.21839 6.32095 6.43982 6.59551 6.63314 6.92953 7.52682 7.59492 7.77005 8.15655 8.22244 8.98280 9.70520 9.88120 11.21190 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.002310 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.953461 B =12118.364253 C =12918.328802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.070 0.930 4 C -0.143 4.143 5 C 0.179 3.821 6 H 0.077 0.923 7 N -0.736 5.736 8 C -0.257 4.257 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.927 5.927 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.071 3.929 17 N -0.609 5.609 18 C 0.528 3.472 19 O -0.551 6.551 20 C -0.134 4.134 21 C -0.116 4.116 22 C 0.099 3.901 23 N -0.509 5.509 24 C 0.407 3.593 25 O -0.436 6.436 26 N -0.298 5.298 27 N -0.299 5.299 28 C 0.408 3.592 29 O -0.434 6.434 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.364 0.636 36 H 0.262 0.738 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.414 0.586 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 10.558 14.128 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.181 4.181 5 C 0.067 3.933 6 H 0.095 0.905 7 N -0.377 5.377 8 C -0.386 4.386 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.574 5.574 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.054 4.054 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.430 6.430 20 C -0.175 4.175 21 C -0.155 4.155 22 C -0.024 4.024 23 N -0.229 5.229 24 C 0.097 3.903 25 O -0.237 6.237 26 N -0.143 5.143 27 N -0.143 5.143 28 C 0.098 3.902 29 O -0.234 6.234 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.198 0.802 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.272 0.728 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -4.665 11.391 15.722 19.967 hybrid contribution 1.595 -0.168 -2.316 2.817 sum -3.070 11.223 13.406 17.751 Atomic orbital electron populations 1.22131 0.94840 1.02431 1.02531 1.21482 0.94561 0.95839 0.84575 0.91241 1.23076 1.01776 0.97088 0.96205 1.21281 0.92616 0.91138 0.88220 0.90513 1.42675 1.34101 1.04466 1.56440 1.19054 1.12816 0.80479 1.26258 0.89000 1.24693 0.98812 0.95315 0.99780 1.69693 1.36036 1.06942 1.44701 0.86572 0.82116 0.79736 0.80186 1.20936 1.21555 1.20214 1.23499 0.94717 0.87364 0.99859 1.48642 1.50081 1.30938 1.04661 1.20110 0.80675 0.84962 0.82574 1.90676 1.39645 1.29170 1.83492 1.21526 1.02794 1.00828 0.92339 1.21651 1.02730 0.99564 0.91571 1.22058 1.01993 0.98791 0.79603 1.47158 1.19409 1.35603 1.20696 1.21328 0.87600 0.91582 0.89762 1.84933 1.19769 1.44605 1.74358 1.78366 1.00632 1.18875 1.16393 1.78369 1.12742 1.09190 1.14035 1.21338 0.83514 0.95901 0.89424 1.84990 1.40884 1.21182 1.76317 0.91444 0.91916 0.92310 0.89863 0.90842 0.80207 0.92796 0.91263 0.90739 0.88210 0.88417 0.90743 0.89979 0.88130 0.87831 0.72772 0.72945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.06 37.16 0.34 -1.63 16 2 C 0.14 1.78 3.49 -66.95 -0.23 1.54 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.14 -1.90 6.13 -24.90 -0.15 -2.05 16 5 C 0.18 2.89 3.73 -65.67 -0.24 2.65 16 6 H 0.08 1.31 8.09 -51.93 -0.42 0.88 16 7 N -0.74 -15.09 5.05 -51.24 -0.26 -15.35 16 8 C -0.26 -6.47 10.44 -15.06 -0.16 -6.63 16 9 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.14 13.97 55.49 0.78 -26.36 16 12 Si 0.88 20.28 27.73 -169.99 -4.71 15.56 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 16 C 0.07 0.99 6.40 -2.41 -0.02 0.97 16 17 N -0.61 -7.91 3.08 -162.88 -0.50 -8.41 16 18 C 0.53 6.69 7.63 -10.98 -0.08 6.61 16 19 O -0.55 -8.59 14.89 5.56 0.08 -8.51 16 20 C -0.13 -1.14 4.70 -27.88 -0.13 -1.27 16 21 C -0.12 -0.92 4.83 -26.73 -0.13 -1.05 16 22 C 0.10 0.59 6.01 -4.05 -0.02 0.56 16 23 N -0.51 -4.32 2.76 -120.06 -0.33 -4.65 16 24 C 0.41 3.98 9.15 -88.82 -0.81 3.17 16 25 O -0.44 -3.06 13.57 -18.58 -0.25 -3.31 16 26 N -0.30 -3.81 12.72 29.65 0.38 -3.44 16 27 N -0.30 -3.83 12.72 29.66 0.38 -3.45 16 28 C 0.41 4.00 9.15 -88.81 -0.81 3.19 16 29 O -0.43 -3.07 13.58 -18.59 -0.25 -3.32 16 30 H 0.07 0.92 6.75 -51.93 -0.35 0.57 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.05 7.83 -51.93 -0.41 0.64 16 34 H 0.07 0.96 8.01 -51.93 -0.42 0.55 16 35 H 0.36 7.39 5.63 -40.82 -0.23 7.16 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 39 H 0.10 0.75 7.85 -51.93 -0.41 0.34 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.41 0.95 9.06 45.56 0.41 1.37 16 46 H 0.41 0.63 9.06 45.56 0.41 1.04 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -35.82 386.35 -6.62 -42.44 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.18 Total: 6.72 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.56 Total: 6.25 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.44 Total: -61.65 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.42 Total: -15.14 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.71 Total: 15.56 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.82 -6.62 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700838829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.994 kcal (2) G-P(sol) polarization free energy of solvation -35.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds