Wall clock time and date at job start Tue Mar 31 2020 22:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.00154 * 2 1 4 4 C 1.54325 * 109.88305 * 238.89904 * 2 1 3 5 5 C 1.55151 * 102.94388 * 262.77456 * 4 2 1 6 6 H 1.09006 * 111.00303 * 82.57587 * 5 4 2 7 7 N 1.46499 * 111.00467 * 206.38246 * 5 4 2 8 8 C 1.36939 * 120.00309 * 205.00380 * 7 5 4 9 9 H 1.07998 * 120.00049 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00037 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99753 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 119.99954 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47149 * 90.00709 * 12 10 8 14 14 H 1.48500 * 109.46980 * 210.00358 * 12 10 8 15 15 H 1.48499 * 109.47560 * 330.00640 * 12 10 8 16 16 C 1.55128 * 101.49064 * 324.33565 * 5 4 2 17 17 N 1.47026 * 109.88192 * 121.09629 * 2 1 3 18 18 C 1.34784 * 125.64491 * 300.43926 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.72909 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47004 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47542 * 179.97438 * 21 20 18 23 23 N 1.46497 * 109.47339 * 179.97438 * 22 21 20 24 24 C 1.36369 * 125.96636 * 269.69319 * 23 22 21 25 25 O 1.35629 * 125.98609 * 0.03201 * 24 23 22 26 26 N 1.30902 * 108.02354 * 179.88890 * 24 23 22 27 27 N 1.40118 * 107.94054 * 0.37300 * 26 24 23 28 28 C 1.30902 * 107.93927 * 359.76407 * 27 26 24 29 29 O 1.35631 * 125.98891 * 180.02562 * 28 27 26 30 30 H 1.08996 * 109.47377 * 300.35602 * 1 2 3 31 31 H 1.09005 * 109.46800 * 60.36353 * 1 2 3 32 32 H 1.09001 * 109.47068 * 180.35605 * 1 2 3 33 33 H 1.08996 * 110.72050 * 21.14243 * 4 2 1 34 34 H 1.09003 * 110.71764 * 144.23355 * 4 2 1 35 35 H 0.97001 * 119.99820 * 25.00677 * 7 5 4 36 36 H 0.96998 * 120.00128 * 179.97438 * 11 10 8 37 37 H 1.09001 * 110.49467 * 278.45549 * 16 5 4 38 38 H 1.09000 * 110.34263 * 156.05799 * 16 5 4 39 39 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 40 40 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 41 41 H 1.08997 * 109.47244 * 300.00535 * 21 20 18 42 42 H 1.09002 * 109.46787 * 59.99910 * 21 20 18 43 43 H 1.08997 * 109.47365 * 300.00556 * 22 21 20 44 44 H 1.09004 * 109.46747 * 59.99765 * 22 21 20 45 45 H 0.96705 * 113.99399 * 90.00300 * 25 24 23 46 46 H 0.96698 * 113.99644 * 269.97720 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2426 5 6 2.3519 -2.1695 -0.6922 6 1 1.4452 -2.7737 -0.6603 7 7 3.3930 -2.8317 -1.4820 8 6 3.4558 -4.1990 -1.5231 9 1 2.7380 -4.7893 -0.9728 10 6 4.4427 -4.8264 -2.2710 11 7 4.5033 -6.1406 -2.3100 12 14 5.6846 -3.8054 -3.2221 13 1 6.8618 -3.5290 -2.3603 14 1 6.1195 -4.5533 -4.4291 15 1 5.0598 -2.5225 -3.6331 16 6 2.8613 -1.8466 0.7370 17 7 2.0300 -0.7141 1.1839 18 6 1.7753 -0.3844 2.4658 19 8 1.0828 0.5787 2.7181 20 6 2.3555 -1.2094 3.5854 21 6 1.9170 -0.6250 4.9297 22 6 2.5054 -1.4629 6.0666 23 7 2.0860 -0.9028 7.3537 24 6 2.7556 0.0437 8.0716 25 8 3.9257 0.6318 7.7187 26 7 2.0694 0.2876 9.1594 27 7 0.9320 -0.5305 9.1446 28 6 0.9609 -1.2415 8.0459 29 8 0.0340 -2.1545 7.6628 30 1 -0.3634 0.5193 0.8867 31 1 -0.3633 0.5082 -0.8933 32 1 -0.3633 -1.0277 0.0064 33 1 1.2918 -0.7892 -2.0200 34 1 2.9639 -0.2814 -1.6201 35 1 4.0380 -2.3015 -1.9759 36 1 5.1926 -6.5790 -2.8329 37 1 3.9123 -1.5588 0.7116 38 1 2.7177 -2.7049 1.3934 39 1 1.9999 -2.2365 3.5020 40 1 3.4435 -1.1953 3.5212 41 1 2.2728 0.4019 5.0129 42 1 0.8289 -0.6387 4.9943 43 1 2.1492 -2.4896 5.9832 44 1 3.5935 -1.4495 6.0021 45 1 3.8186 1.4377 7.1950 46 1 0.2148 -3.0524 7.9729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700838829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:47 Heat of formation + Delta-G solvation = -40.909392 kcal Electronic energy + Delta-G solvation = -29365.616336 eV Core-core repulsion = 25099.225337 eV Total energy + Delta-G solvation = -4266.390999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.31975 -41.28194 -39.13383 -38.97494 -38.04957 -36.69720 -36.05052 -33.79591 -33.45872 -32.48236 -30.69059 -30.39706 -28.20771 -26.74722 -25.53855 -24.21498 -23.83845 -22.92066 -22.46571 -21.56931 -20.10921 -19.76093 -19.71250 -19.53758 -18.18729 -17.73494 -17.44442 -17.14683 -16.72272 -16.48013 -16.28514 -15.95915 -15.31614 -15.13577 -15.02559 -14.69564 -14.52757 -14.31493 -13.99123 -13.94778 -13.67171 -13.45420 -13.35797 -13.32192 -13.10399 -12.97113 -12.91941 -12.81292 -12.38521 -12.23543 -12.15783 -11.98975 -11.91349 -11.80073 -11.52765 -11.44869 -11.12814 -11.02390 -10.77795 -10.56241 -9.68928 -9.31448 -7.99597 -5.34965 0.51098 0.72502 1.13410 1.43317 1.45313 1.52917 1.63139 1.98178 2.21505 2.51590 2.86365 3.28484 3.31019 3.48628 3.65586 3.79432 3.86542 3.88168 4.01425 4.06129 4.14217 4.24829 4.34170 4.37112 4.39500 4.42218 4.47207 4.60427 4.65677 4.69717 4.83521 4.90283 4.99424 5.01633 5.09882 5.15080 5.23143 5.31461 5.33652 5.46526 5.80317 6.23462 6.23694 6.45177 6.56946 6.79402 7.09001 7.16362 7.83374 8.01922 9.21082 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.002310 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.953461 B =12118.364253 C =12918.328802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.131 4.131 5 C 0.169 3.831 6 H 0.064 0.936 7 N -0.738 5.738 8 C -0.230 4.230 9 H 0.063 0.937 10 C -0.059 4.059 11 N -0.981 5.981 12 Si 0.950 3.050 13 H -0.277 1.277 14 H -0.303 1.303 15 H -0.249 1.249 16 C 0.085 3.915 17 N -0.610 5.610 18 C 0.522 3.478 19 O -0.583 6.583 20 C -0.128 4.128 21 C -0.106 4.106 22 C 0.101 3.899 23 N -0.504 5.504 24 C 0.417 3.583 25 O -0.435 6.435 26 N -0.342 5.342 27 N -0.344 5.344 28 C 0.418 3.582 29 O -0.436 6.436 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.369 0.631 36 H 0.257 0.743 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.434 0.566 46 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 11.723 13.707 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.169 4.169 5 C 0.059 3.941 6 H 0.082 0.918 7 N -0.380 5.380 8 C -0.361 4.361 9 H 0.081 0.919 10 C -0.251 4.251 11 N -0.631 5.631 12 Si 0.777 3.223 13 H -0.204 1.204 14 H -0.231 1.231 15 H -0.173 1.173 16 C -0.041 4.041 17 N -0.344 5.344 18 C 0.313 3.687 19 O -0.464 6.464 20 C -0.168 4.168 21 C -0.145 4.145 22 C -0.021 4.021 23 N -0.224 5.224 24 C 0.106 3.894 25 O -0.238 6.238 26 N -0.187 5.187 27 N -0.188 5.188 28 C 0.107 3.893 29 O -0.240 6.240 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.203 0.797 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.296 0.704 46 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -3.762 12.610 15.317 20.193 hybrid contribution 1.182 -0.516 -2.186 2.538 sum -2.580 12.095 13.131 18.038 Atomic orbital electron populations 1.22066 0.94517 1.02033 1.02634 1.21519 0.94809 0.95961 0.84346 0.90851 1.22992 1.02505 0.94853 0.96595 1.21440 0.91076 0.92245 0.89386 0.91756 1.42601 1.35300 1.02719 1.57406 1.19008 1.10817 0.82451 1.23819 0.91899 1.25454 1.01518 0.96270 1.01869 1.69871 1.37417 1.09095 1.46761 0.85497 0.79697 0.78978 0.78099 1.20361 1.23080 1.17308 1.23178 0.94798 0.87933 0.98154 1.48682 1.50012 1.30605 1.05077 1.20840 0.80006 0.84819 0.83034 1.90669 1.41079 1.30789 1.83848 1.21562 1.03896 1.00632 0.90676 1.21508 1.01232 0.99632 0.92139 1.22230 1.03094 0.99197 0.77548 1.47203 1.18821 1.35239 1.21138 1.21353 0.87578 0.91190 0.89255 1.84909 1.18413 1.45691 1.74802 1.78241 1.01642 1.20386 1.18429 1.78246 1.13692 1.10713 1.16182 1.21365 0.83625 0.95528 0.88752 1.84962 1.40335 1.22420 1.76262 0.93089 0.90094 0.92871 0.88977 0.89967 0.79707 0.93415 0.90820 0.90041 0.86669 0.86137 0.91519 0.92365 0.85899 0.85798 0.70374 0.70135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.06 71.98 0.65 -2.85 16 2 C 0.14 3.18 3.49 45.34 0.16 3.34 16 3 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.13 -3.12 6.13 31.78 0.19 -2.92 16 5 C 0.17 5.08 3.73 46.46 0.17 5.26 16 6 H 0.06 2.11 8.09 -2.38 -0.02 2.09 16 7 N -0.74 -28.75 5.05 -316.02 -1.59 -30.35 16 8 C -0.23 -11.50 10.44 84.03 0.88 -10.62 16 9 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 10 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 11 N -0.98 -58.54 13.97 21.65 0.30 -58.24 16 12 Si 0.95 41.11 27.73 68.60 1.90 43.02 16 13 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 14 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 15 H -0.25 -9.49 6.52 99.48 0.65 -8.84 16 16 C 0.08 2.12 6.40 86.93 0.56 2.67 16 17 N -0.61 -14.40 3.08 -787.63 -2.43 -16.82 16 18 C 0.52 12.16 7.63 87.65 0.67 12.82 16 19 O -0.58 -17.52 14.89 -3.01 -0.04 -17.56 16 20 C -0.13 -1.78 4.70 29.85 0.14 -1.64 16 21 C -0.11 -1.44 4.83 30.59 0.15 -1.29 16 22 C 0.10 0.90 6.01 86.38 0.52 1.42 16 23 N -0.50 -7.70 2.76 -755.19 -2.08 -9.78 16 24 C 0.42 7.70 9.15 179.72 1.65 9.34 16 25 O -0.43 -5.28 13.57 -89.42 -1.21 -6.49 16 26 N -0.34 -8.80 12.72 -173.66 -2.21 -11.01 16 27 N -0.34 -8.87 12.72 -173.66 -2.21 -11.08 16 28 C 0.42 7.81 9.15 179.72 1.65 9.46 16 29 O -0.44 -5.51 13.58 -89.44 -1.21 -6.72 16 30 H 0.05 1.34 6.75 -2.39 -0.02 1.32 16 31 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 2.05 7.83 -2.39 -0.02 2.03 16 34 H 0.08 1.86 8.01 -2.39 -0.02 1.84 16 35 H 0.37 13.81 5.63 -92.71 -0.52 13.29 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.93 7.48 -2.39 -0.02 1.91 16 39 H 0.12 1.31 7.85 -2.38 -0.02 1.29 16 40 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 42 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 43 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.43 1.14 9.06 -74.05 -0.67 0.47 16 46 H 0.44 0.47 9.06 -74.06 -0.67 -0.20 16 Total: -1.00 -79.69 386.35 -3.82 -83.51 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.88 Total: 19.26 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 7.85 Total: 22.28 kcal Atomic # 7 Polarization: -127.07 SS G_CDS: -10.22 Total: -137.29 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -2.47 Total: -30.78 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.90 Total: 43.02 kcal Total: -79.69 -3.82 -83.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700838829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.601 kcal (2) G-P(sol) polarization free energy of solvation -79.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds