Wall clock time and date at job start Tue Mar 31 2020 22:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.86812 * 2 1 4 4 C 1.54325 * 109.88042 * 121.01201 * 2 1 3 5 5 C 1.55155 * 102.94032 * 97.38192 * 4 2 1 6 6 H 1.08991 * 111.00672 * 277.39134 * 5 4 2 7 7 N 1.46505 * 111.00247 * 153.57428 * 5 4 2 8 8 C 1.36931 * 119.99788 * 158.18134 * 7 5 4 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 5 11 11 N 1.31617 * 119.99873 * 180.27450 * 10 8 7 12 12 Si 1.86800 * 120.00209 * 0.27770 * 10 8 7 13 13 H 1.48498 * 109.47118 * 89.99559 * 12 10 8 14 14 H 1.48499 * 109.47134 * 210.00079 * 12 10 8 15 15 H 1.48507 * 109.46904 * 329.99901 * 12 10 8 16 16 C 1.54914 * 101.61562 * 35.48447 * 5 4 2 17 17 N 1.47019 * 110.01375 * 238.90208 * 2 1 3 18 18 C 1.34777 * 125.65068 * 59.48238 * 17 2 1 19 19 O 1.21282 * 119.99807 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99863 * 179.97438 * 18 17 2 21 21 C 1.53001 * 109.46920 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47255 * 180.02562 * 21 20 18 23 23 N 1.46496 * 109.47076 * 179.97438 * 22 21 20 24 24 C 1.36368 * 125.96519 * 269.69197 * 23 22 21 25 25 O 1.35634 * 125.98975 * 0.03379 * 24 23 22 26 26 N 1.30906 * 108.02502 * 179.88952 * 24 23 22 27 27 N 1.40121 * 107.93812 * 0.37402 * 26 24 23 28 28 C 1.30904 * 107.93610 * 359.76120 * 27 26 24 29 29 O 1.35630 * 125.98285 * 180.02562 * 28 27 26 30 30 H 1.08994 * 109.47493 * 298.98428 * 1 2 3 31 31 H 1.09002 * 109.47000 * 58.99201 * 1 2 3 32 32 H 1.09005 * 109.46509 * 178.98474 * 1 2 3 33 33 H 1.09000 * 110.71993 * 339.01870 * 4 2 1 34 34 H 1.09006 * 110.87089 * 215.81501 * 4 2 1 35 35 H 0.97000 * 119.99792 * 338.17928 * 7 5 4 36 36 H 0.97000 * 120.00553 * 180.02562 * 11 10 8 37 37 H 1.08998 * 110.36983 * 81.84862 * 16 5 4 38 38 H 1.09000 * 110.36647 * 204.17116 * 16 5 4 39 39 H 1.08998 * 109.47231 * 300.00063 * 20 18 17 40 40 H 1.09004 * 109.46706 * 60.00459 * 20 18 17 41 41 H 1.09003 * 109.47494 * 300.00413 * 21 20 18 42 42 H 1.09000 * 109.46862 * 60.00179 * 21 20 18 43 43 H 1.08998 * 109.46983 * 300.00065 * 22 21 20 44 44 H 1.09004 * 109.46620 * 60.00256 * 22 21 20 45 45 H 0.96703 * 113.99585 * 90.00522 * 25 24 23 46 46 H 0.96708 * 113.99725 * 269.97313 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 2.3557 -2.1673 0.6946 6 1 1.4506 -2.7736 0.6623 7 7 3.3980 -2.8263 1.4856 8 6 3.5046 -4.1914 1.4757 9 1 2.8207 -4.7823 0.8845 10 6 4.4958 -4.8156 2.2207 11 7 4.6017 -6.1274 2.2070 12 14 5.6792 -3.7936 3.2428 13 1 5.1204 -3.6047 4.6056 14 1 6.9852 -4.4943 3.3359 15 1 5.8728 -2.4694 2.5992 16 6 2.8616 -1.8481 -0.7344 17 7 2.0332 -0.7135 -1.1829 18 6 1.7795 -0.3852 -2.4652 19 8 1.0808 0.5731 -2.7189 20 6 2.3641 -1.2088 -3.5837 21 6 1.9258 -0.6262 -4.9288 22 6 2.5187 -1.4627 -6.0644 23 7 2.0986 -0.9052 -7.3524 24 6 0.9785 -1.2527 -8.0484 25 8 0.0584 -2.1742 -7.6692 26 7 0.9454 -0.5387 -9.1451 27 7 2.0794 0.2843 -9.1587 28 6 2.7624 0.0476 -8.0674 29 8 3.9261 0.6456 -7.7102 30 1 -0.3634 0.4979 0.8989 31 1 -0.3633 0.5294 -0.8808 32 1 -0.3632 -1.0276 -0.0182 33 1 1.2908 -0.7885 2.0202 34 1 2.9636 -0.2804 1.6232 35 1 4.0125 -2.2956 2.0163 36 1 5.2941 -6.5636 2.7278 37 1 3.9134 -1.5631 -0.7097 38 1 2.7158 -2.7073 -1.3891 39 1 3.4519 -1.1912 -3.5176 40 1 2.0114 -2.2368 -3.5004 41 1 0.8379 -0.6433 -4.9952 42 1 2.2787 0.4018 -5.0118 43 1 3.6066 -1.4459 -5.9983 44 1 2.1654 -2.4905 -5.9812 45 1 -0.6648 -1.8127 -7.1388 46 1 4.7170 0.1878 -8.0268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700838830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:52 Heat of formation + Delta-G solvation = -8.419463 kcal Electronic energy + Delta-G solvation = -29372.845195 eV Core-core repulsion = 25107.863066 eV Total energy + Delta-G solvation = -4264.982130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61633 -40.23010 -38.54983 -37.86061 -37.45766 -35.98139 -34.45042 -32.95026 -31.75895 -31.46501 -29.93272 -28.96313 -27.49513 -25.68329 -24.01952 -23.23356 -23.12334 -22.16276 -21.44387 -20.34564 -19.31551 -19.11942 -18.76457 -17.87085 -17.27289 -17.05142 -16.57247 -16.26186 -15.79757 -15.56080 -15.23315 -14.59347 -14.41098 -14.06303 -13.81429 -13.54662 -13.42722 -13.24727 -12.96040 -12.89224 -12.81891 -12.74901 -12.56514 -12.21142 -12.05158 -11.98390 -11.66476 -11.60500 -11.34588 -11.20506 -10.95727 -10.86551 -10.77428 -10.48395 -10.38767 -10.17653 -9.83563 -9.79844 -9.76383 -9.17137 -8.56918 -7.52566 -5.96142 -3.34992 1.15961 1.36176 1.87165 2.61040 2.85897 2.95307 3.23073 3.26428 3.33096 3.42035 4.01569 4.18948 4.41399 4.50845 4.61578 4.68698 4.83628 4.87242 4.90073 4.92423 5.00266 5.05324 5.18556 5.24308 5.28164 5.40134 5.42446 5.59894 5.63580 5.65023 5.72521 5.75650 5.78060 5.89963 5.97904 6.05909 6.21442 6.30970 6.43876 6.59834 6.63579 6.93246 7.52934 7.59665 7.76946 8.15962 8.22281 8.98365 9.70630 9.88280 11.21253 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.002319 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.687207 B =12069.895096 C =12899.078741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.070 0.930 4 C -0.142 4.142 5 C 0.179 3.821 6 H 0.075 0.925 7 N -0.736 5.736 8 C -0.256 4.256 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.927 5.927 12 Si 0.884 3.116 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.072 3.928 17 N -0.609 5.609 18 C 0.528 3.472 19 O -0.551 6.551 20 C -0.134 4.134 21 C -0.116 4.116 22 C 0.099 3.901 23 N -0.509 5.509 24 C 0.408 3.592 25 O -0.436 6.436 26 N -0.298 5.298 27 N -0.299 5.299 28 C 0.407 3.593 29 O -0.434 6.434 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.365 0.635 36 H 0.262 0.738 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.414 0.586 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 10.566 -13.806 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.181 4.181 5 C 0.067 3.933 6 H 0.093 0.907 7 N -0.378 5.378 8 C -0.386 4.386 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.574 5.574 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.054 4.054 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.430 6.430 20 C -0.175 4.175 21 C -0.155 4.155 22 C -0.025 4.025 23 N -0.229 5.229 24 C 0.098 3.902 25 O -0.236 6.236 26 N -0.143 5.143 27 N -0.143 5.143 28 C 0.097 3.903 29 O -0.234 6.234 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.198 0.802 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.273 0.727 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -4.896 11.400 -15.418 19.790 hybrid contribution 1.590 -0.157 2.345 2.838 sum -3.306 11.242 -13.073 17.556 Atomic orbital electron populations 1.22131 0.94843 1.02408 1.02514 1.21469 0.94528 0.95883 0.84572 0.91224 1.23051 1.01787 0.96980 0.96239 1.21238 0.92578 0.91166 0.88301 0.90721 1.42677 1.35976 1.04685 1.54426 1.19045 1.13707 0.80673 1.25158 0.89003 1.24692 0.98777 0.95335 0.99786 1.69691 1.35844 1.07168 1.44677 0.86574 0.81399 0.79663 0.80960 1.20883 1.21595 1.20268 1.23471 0.94837 0.87289 0.99784 1.48650 1.50132 1.30879 1.04646 1.20112 0.80751 0.84891 0.82568 1.90677 1.39448 1.29416 1.83459 1.21525 1.02898 1.00725 0.92336 1.21652 1.01971 1.00310 0.91575 1.22061 1.01911 0.98901 0.79579 1.47155 1.21937 1.33090 1.20672 1.21338 0.86449 0.92493 0.89916 1.84938 1.35525 1.29677 1.73488 1.78371 1.13385 1.06545 1.15970 1.78366 1.02666 1.18839 1.14469 1.21328 0.90811 0.88798 0.89322 1.84989 1.12208 1.49056 1.77159 0.91898 0.91461 0.92333 0.89823 0.90787 0.80190 0.92797 0.91238 0.90748 0.88389 0.88234 0.90680 0.90046 0.88205 0.87744 0.72723 0.72997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.06 37.16 0.34 -1.59 16 2 C 0.14 1.78 3.49 -66.95 -0.23 1.54 16 3 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 4 C -0.14 -1.87 6.13 -24.90 -0.15 -2.03 16 5 C 0.18 2.88 3.70 -65.78 -0.24 2.64 16 6 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 7 N -0.74 -15.10 5.06 -51.35 -0.26 -15.36 16 8 C -0.26 -6.46 10.46 -15.06 -0.16 -6.62 16 9 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.13 13.97 55.49 0.78 -26.35 16 12 Si 0.88 20.28 27.74 -169.99 -4.72 15.57 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.28 -5.88 6.51 56.52 0.37 -5.52 16 16 C 0.07 1.00 6.39 -2.50 -0.02 0.99 16 17 N -0.61 -7.95 3.09 -162.98 -0.50 -8.45 16 18 C 0.53 6.73 7.63 -10.99 -0.08 6.64 16 19 O -0.55 -8.62 14.89 5.56 0.08 -8.53 16 20 C -0.13 -1.15 4.71 -27.88 -0.13 -1.28 16 21 C -0.12 -0.92 4.83 -26.73 -0.13 -1.05 16 22 C 0.10 0.59 6.01 -4.04 -0.02 0.57 16 23 N -0.51 -4.34 2.76 -120.06 -0.33 -4.67 16 24 C 0.41 4.03 9.15 -88.81 -0.81 3.21 16 25 O -0.44 -3.13 13.57 -18.60 -0.25 -3.38 16 26 N -0.30 -3.83 12.72 29.65 0.38 -3.45 16 27 N -0.30 -3.83 12.72 29.65 0.38 -3.45 16 28 C 0.41 3.99 9.15 -88.81 -0.81 3.18 16 29 O -0.43 -3.03 13.58 -18.59 -0.25 -3.28 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.90 6.77 -51.93 -0.35 0.55 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.03 7.83 -51.93 -0.41 0.62 16 34 H 0.07 0.97 7.99 -51.93 -0.42 0.55 16 35 H 0.36 7.40 5.59 -40.82 -0.23 7.18 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.00 7.48 -51.93 -0.39 0.61 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.73 7.85 -51.93 -0.41 0.33 16 41 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 42 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.41 1.03 9.06 45.56 0.41 1.44 16 46 H 0.41 0.58 9.06 45.56 0.41 1.00 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -35.83 386.34 -6.62 -42.45 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.18 Total: 6.72 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -2.56 Total: 6.39 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.44 Total: -61.75 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.42 Total: -15.20 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.72 Total: 15.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.83 -6.62 -42.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700838830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.028 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds