Wall clock time and date at job start Tue Mar 31 2020 22:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.32507 * 2 1 4 4 C 1.54910 * 110.36861 * 122.23694 * 2 1 3 5 5 C 1.55152 * 101.58006 * 155.95961 * 4 2 1 6 6 H 1.09006 * 110.72445 * 83.03530 * 5 4 2 7 7 N 1.46504 * 110.72133 * 206.13546 * 5 4 2 8 8 C 1.36935 * 119.99849 * 205.00198 * 7 5 4 9 9 H 1.07997 * 120.00561 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99619 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00121 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 119.99829 * 12 10 8 15 15 H 1.48498 * 109.47295 * 240.00436 * 12 10 8 16 16 C 1.54325 * 102.94540 * 324.49704 * 5 4 2 17 17 N 1.47029 * 107.27089 * 22.19449 * 16 5 4 18 18 C 1.34766 * 125.64926 * 181.02697 * 17 16 5 19 19 O 1.21292 * 119.99962 * 180.02562 * 18 17 16 20 20 C 1.50700 * 120.00502 * 0.03854 * 18 17 16 21 21 C 1.52997 * 109.47634 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47472 * 179.97438 * 21 20 18 23 23 N 1.46500 * 109.47285 * 179.97438 * 22 21 20 24 24 C 1.36367 * 125.95944 * 269.69152 * 23 22 21 25 25 O 1.35629 * 125.99474 * 0.03661 * 24 23 22 26 26 N 1.30912 * 108.01601 * 179.88797 * 24 23 22 27 27 N 1.40109 * 107.94017 * 0.37188 * 26 24 23 28 28 C 1.30895 * 107.94225 * 359.76433 * 27 26 24 29 29 O 1.35636 * 125.98998 * 180.02562 * 28 27 26 30 30 H 1.08994 * 109.46915 * 297.75863 * 1 2 3 31 31 H 1.08994 * 109.47156 * 57.76672 * 1 2 3 32 32 H 1.08998 * 109.46845 * 177.76553 * 1 2 3 33 33 H 1.08995 * 111.00119 * 37.88258 * 4 2 1 34 34 H 1.09002 * 111.00253 * 274.03013 * 4 2 1 35 35 H 0.96996 * 119.99617 * 24.99884 * 7 5 4 36 36 H 0.97000 * 119.99517 * 0.02562 * 11 10 8 37 37 H 1.08996 * 109.88819 * 141.60922 * 16 5 4 38 38 H 1.08999 * 109.88206 * 262.78037 * 16 5 4 39 39 H 1.09002 * 109.46668 * 300.00601 * 20 18 17 40 40 H 1.08999 * 109.47043 * 59.99613 * 20 18 17 41 41 H 1.09002 * 109.46976 * 300.00290 * 21 20 18 42 42 H 1.08999 * 109.46734 * 59.99724 * 21 20 18 43 43 H 1.09002 * 109.46789 * 300.00281 * 22 21 20 44 44 H 1.09008 * 109.46908 * 59.99431 * 22 21 20 45 45 H 0.96698 * 114.00201 * 90.00222 * 25 24 23 46 46 H 0.96695 * 113.99742 * 269.97631 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0692 -0.7747 1.2284 5 6 3.4789 -1.1964 0.7364 6 1 4.1950 -0.3868 0.8776 7 7 3.9274 -2.4087 1.4260 8 6 5.2658 -2.6699 1.5508 9 1 5.9908 -1.9826 1.1406 10 6 5.6907 -3.8183 2.2048 11 7 4.8073 -4.6557 2.7052 12 14 7.5164 -4.1751 2.3745 13 1 8.2954 -3.0863 1.7318 14 1 7.8735 -4.2555 3.8137 15 1 7.8319 -5.4668 1.7133 16 6 3.2524 -1.4744 -0.7646 17 7 2.0453 -0.7380 -1.1676 18 6 1.5006 -0.7372 -2.4003 19 8 0.4990 -0.0895 -2.6204 20 6 2.1357 -1.5413 -3.5054 21 6 1.3268 -1.3676 -4.7923 22 6 1.9720 -2.1834 -5.9144 23 7 1.1971 -2.0176 -7.1465 24 6 0.1550 -2.7999 -7.5486 25 8 -0.3458 -3.8669 -6.8777 26 7 -0.2794 -2.3384 -8.6941 27 7 0.5103 -1.2345 -9.0420 28 6 1.3958 -1.0575 -8.0944 29 8 2.3444 -0.0886 -8.0609 30 1 -0.3633 0.4786 0.9094 31 1 -0.3633 0.5481 -0.8692 32 1 -0.3633 -1.0269 -0.0401 33 1 1.4523 -1.6476 1.4413 34 1 2.1381 -0.1247 2.1007 35 1 3.2763 -3.0262 1.7942 36 1 3.8592 -4.4706 2.6168 37 1 4.1094 -1.1244 -1.3400 38 1 3.1061 -2.5424 -0.9259 39 1 3.1558 -1.1931 -3.6679 40 1 2.1518 -2.5946 -3.2252 41 1 0.3067 -1.7155 -4.6300 42 1 1.3113 -0.3142 -5.0722 43 1 2.9921 -1.8351 -6.0765 44 1 1.9880 -3.2369 -5.6346 45 1 -1.0542 -3.6448 -6.2580 46 1 3.1805 -0.3424 -8.4752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700838831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:55 Heat of formation + Delta-G solvation = -10.526336 kcal Electronic energy + Delta-G solvation = -29396.266279 eV Core-core repulsion = 25131.192789 eV Total energy + Delta-G solvation = -4265.073491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.62433 -40.22274 -38.55715 -37.77410 -37.46431 -35.99229 -34.59600 -32.97758 -31.66494 -31.43058 -29.93980 -28.36133 -27.44624 -25.51182 -23.95306 -23.31301 -23.13234 -22.18093 -21.43058 -20.54716 -19.32885 -19.12333 -18.68959 -17.59927 -17.14383 -17.07839 -16.63555 -16.33571 -15.83163 -15.70939 -15.15526 -14.56220 -14.44207 -14.18508 -13.84374 -13.61046 -13.48187 -13.32009 -12.94847 -12.93113 -12.74540 -12.70571 -12.30905 -12.17343 -12.02209 -11.94611 -11.62543 -11.35704 -11.26017 -11.09658 -10.87255 -10.81842 -10.66511 -10.45033 -10.38553 -10.16719 -9.80492 -9.62319 -9.36078 -9.12381 -8.52295 -7.29467 -6.29226 -3.32677 1.15231 1.35486 1.86499 2.62179 2.85304 2.97582 3.40528 3.41614 3.46270 3.55543 4.00655 4.19572 4.50164 4.50680 4.67125 4.68846 4.82779 4.88180 4.91136 4.93590 5.04501 5.07661 5.24505 5.27495 5.30976 5.45250 5.49494 5.60053 5.65045 5.69201 5.72148 5.77181 5.87827 5.89931 5.99795 6.21759 6.27899 6.31068 6.50119 6.62929 6.64366 6.92567 7.52301 7.60121 7.64974 8.18484 8.56123 8.99204 9.85917 9.98966 11.18387 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.002365 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.718903 B =11838.639206 C =13003.147723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.139 4.139 5 C 0.177 3.823 6 H 0.070 0.930 7 N -0.724 5.724 8 C -0.343 4.343 9 H 0.068 0.932 10 C -0.039 4.039 11 N -0.939 5.939 12 Si 1.085 2.915 13 H -0.294 1.294 14 H -0.292 1.292 15 H -0.292 1.292 16 C 0.073 3.927 17 N -0.609 5.609 18 C 0.528 3.472 19 O -0.550 6.550 20 C -0.134 4.134 21 C -0.116 4.116 22 C 0.099 3.901 23 N -0.509 5.509 24 C 0.408 3.592 25 O -0.436 6.436 26 N -0.298 5.298 27 N -0.299 5.299 28 C 0.407 3.593 29 O -0.434 6.434 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.370 0.630 36 H 0.257 0.743 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.414 0.586 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 6.580 -15.146 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.065 3.935 6 H 0.088 0.912 7 N -0.365 5.365 8 C -0.473 4.473 9 H 0.086 0.914 10 C -0.238 4.238 11 N -0.583 5.583 12 Si 0.915 3.085 13 H -0.220 1.220 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.053 4.053 17 N -0.343 5.343 18 C 0.316 3.684 19 O -0.429 6.429 20 C -0.175 4.175 21 C -0.155 4.155 22 C -0.024 4.024 23 N -0.229 5.229 24 C 0.098 3.902 25 O -0.236 6.236 26 N -0.143 5.143 27 N -0.143 5.143 28 C 0.097 3.903 29 O -0.234 6.234 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.204 0.796 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.273 0.727 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -5.469 6.138 -16.115 18.090 hybrid contribution -0.236 0.619 0.987 1.188 sum -5.705 6.756 -15.128 17.523 Atomic orbital electron populations 1.22110 0.94219 1.02528 1.02822 1.21858 0.94803 0.95356 0.84693 0.90942 1.23199 0.97839 1.00332 0.96472 1.21101 0.93158 0.90817 0.88422 0.91236 1.42403 1.05192 1.22661 1.66270 1.20109 0.83137 1.08155 1.35906 0.91399 1.25821 1.06940 0.93417 0.97586 1.70839 1.01847 1.38116 1.47532 0.83160 0.73604 0.75346 0.76350 1.22000 1.21861 1.21887 1.23302 0.85164 0.96435 1.00360 1.48666 1.28608 1.48139 1.08858 1.20095 0.84025 0.81857 0.82375 1.90644 1.25691 1.44574 1.82031 1.21519 1.00877 1.01957 0.93116 1.21647 0.99880 1.01677 0.92263 1.22058 0.95502 1.03225 0.81648 1.47157 1.30041 1.24674 1.20984 1.21342 0.89087 0.87805 0.91958 1.84934 1.56287 1.23913 1.58508 1.78372 1.19685 1.05714 1.10481 1.78358 1.06580 1.10473 1.18908 1.21323 0.94941 0.86331 0.87676 1.84988 1.25277 1.31933 1.81199 0.92288 0.90100 0.92887 0.90738 0.90109 0.79620 0.93206 0.92118 0.91024 0.88489 0.88398 0.90687 0.90019 0.88228 0.87796 0.72707 0.73019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.60 37.16 0.32 -1.76 16 2 C 0.14 1.84 3.76 -66.41 -0.25 1.59 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.03 6.13 -24.58 -0.15 -2.18 16 5 C 0.18 3.05 3.61 -66.10 -0.24 2.81 16 6 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 7 N -0.72 -16.06 5.15 -51.65 -0.27 -16.33 16 8 C -0.34 -8.69 9.96 -15.06 -0.15 -8.84 16 9 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 10 C -0.04 -1.05 5.50 -17.43 -0.10 -1.15 16 11 N -0.94 -27.17 13.70 55.49 0.76 -26.41 16 12 Si 1.08 24.15 29.92 -169.99 -5.09 19.07 16 13 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.07 1.09 6.24 -3.06 -0.02 1.07 16 17 N -0.61 -8.40 3.24 -163.04 -0.53 -8.93 16 18 C 0.53 7.00 7.63 -10.99 -0.08 6.91 16 19 O -0.55 -8.69 13.71 5.55 0.08 -8.62 16 20 C -0.13 -1.22 4.89 -27.88 -0.14 -1.35 16 21 C -0.12 -0.96 4.83 -26.73 -0.13 -1.09 16 22 C 0.10 0.62 6.01 -4.04 -0.02 0.59 16 23 N -0.51 -4.42 2.76 -120.05 -0.33 -4.76 16 24 C 0.41 4.11 9.15 -88.81 -0.81 3.29 16 25 O -0.44 -3.25 13.57 -18.58 -0.25 -3.51 16 26 N -0.30 -3.87 12.72 29.65 0.38 -3.49 16 27 N -0.30 -3.85 12.72 29.65 0.38 -3.47 16 28 C 0.41 4.02 9.15 -88.82 -0.81 3.21 16 29 O -0.43 -3.04 13.58 -18.61 -0.25 -3.29 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.17 6.10 -51.93 -0.32 0.85 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.37 8.59 6.59 -40.82 -0.27 8.32 16 36 H 0.26 7.27 6.77 -40.82 -0.28 7.00 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.15 8.03 -51.93 -0.42 0.73 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.41 1.17 9.06 45.56 0.41 1.58 16 46 H 0.41 0.58 9.06 45.56 0.41 0.99 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -35.69 386.79 -7.02 -42.71 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.14 Total: 8.08 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.58 Total: 3.12 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.39 Total: -63.39 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.43 Total: -15.42 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.09 Total: 19.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.69 -7.02 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700838831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.184 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds