Wall clock time and date at job start Tue Mar 31 2020 22:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.32507 * 2 1 4 4 C 1.54910 * 110.36861 * 122.23694 * 2 1 3 5 5 C 1.55152 * 101.58006 * 155.95961 * 4 2 1 6 6 H 1.09006 * 110.72445 * 83.03530 * 5 4 2 7 7 N 1.46504 * 110.72133 * 206.13546 * 5 4 2 8 8 C 1.36935 * 119.99849 * 205.00198 * 7 5 4 9 9 H 1.07997 * 120.00561 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99619 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00121 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 119.99829 * 12 10 8 15 15 H 1.48498 * 109.47295 * 240.00436 * 12 10 8 16 16 C 1.54325 * 102.94540 * 324.49704 * 5 4 2 17 17 N 1.47029 * 107.27089 * 22.19449 * 16 5 4 18 18 C 1.34766 * 125.64926 * 181.02697 * 17 16 5 19 19 O 1.21292 * 119.99962 * 180.02562 * 18 17 16 20 20 C 1.50700 * 120.00502 * 0.03854 * 18 17 16 21 21 C 1.52997 * 109.47634 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47472 * 179.97438 * 21 20 18 23 23 N 1.46500 * 109.47285 * 179.97438 * 22 21 20 24 24 C 1.36367 * 125.95944 * 269.69152 * 23 22 21 25 25 O 1.35629 * 125.99474 * 0.03661 * 24 23 22 26 26 N 1.30912 * 108.01601 * 179.88797 * 24 23 22 27 27 N 1.40109 * 107.94017 * 0.37188 * 26 24 23 28 28 C 1.30895 * 107.94225 * 359.76433 * 27 26 24 29 29 O 1.35636 * 125.98998 * 180.02562 * 28 27 26 30 30 H 1.08994 * 109.46915 * 297.75863 * 1 2 3 31 31 H 1.08994 * 109.47156 * 57.76672 * 1 2 3 32 32 H 1.08998 * 109.46845 * 177.76553 * 1 2 3 33 33 H 1.08995 * 111.00119 * 37.88258 * 4 2 1 34 34 H 1.09002 * 111.00253 * 274.03013 * 4 2 1 35 35 H 0.96996 * 119.99617 * 24.99884 * 7 5 4 36 36 H 0.97000 * 119.99517 * 0.02562 * 11 10 8 37 37 H 1.08996 * 109.88819 * 141.60922 * 16 5 4 38 38 H 1.08999 * 109.88206 * 262.78037 * 16 5 4 39 39 H 1.09002 * 109.46668 * 300.00601 * 20 18 17 40 40 H 1.08999 * 109.47043 * 59.99613 * 20 18 17 41 41 H 1.09002 * 109.46976 * 300.00290 * 21 20 18 42 42 H 1.08999 * 109.46734 * 59.99724 * 21 20 18 43 43 H 1.09002 * 109.46789 * 300.00281 * 22 21 20 44 44 H 1.09008 * 109.46908 * 59.99431 * 22 21 20 45 45 H 0.96698 * 114.00201 * 90.00222 * 25 24 23 46 46 H 0.96695 * 113.99742 * 269.97631 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0692 -0.7747 1.2284 5 6 3.4789 -1.1964 0.7364 6 1 4.1950 -0.3868 0.8776 7 7 3.9274 -2.4087 1.4260 8 6 5.2658 -2.6699 1.5508 9 1 5.9908 -1.9826 1.1406 10 6 5.6907 -3.8183 2.2048 11 7 4.8073 -4.6557 2.7052 12 14 7.5164 -4.1751 2.3745 13 1 8.2954 -3.0863 1.7318 14 1 7.8735 -4.2555 3.8137 15 1 7.8319 -5.4668 1.7133 16 6 3.2524 -1.4744 -0.7646 17 7 2.0453 -0.7380 -1.1676 18 6 1.5006 -0.7372 -2.4003 19 8 0.4990 -0.0895 -2.6204 20 6 2.1357 -1.5413 -3.5054 21 6 1.3268 -1.3676 -4.7923 22 6 1.9720 -2.1834 -5.9144 23 7 1.1971 -2.0176 -7.1465 24 6 0.1550 -2.7999 -7.5486 25 8 -0.3458 -3.8669 -6.8777 26 7 -0.2794 -2.3384 -8.6941 27 7 0.5103 -1.2345 -9.0420 28 6 1.3958 -1.0575 -8.0944 29 8 2.3444 -0.0886 -8.0609 30 1 -0.3633 0.4786 0.9094 31 1 -0.3633 0.5481 -0.8692 32 1 -0.3633 -1.0269 -0.0401 33 1 1.4523 -1.6476 1.4413 34 1 2.1381 -0.1247 2.1007 35 1 3.2763 -3.0262 1.7942 36 1 3.8592 -4.4706 2.6168 37 1 4.1094 -1.1244 -1.3400 38 1 3.1061 -2.5424 -0.9259 39 1 3.1558 -1.1931 -3.6679 40 1 2.1518 -2.5946 -3.2252 41 1 0.3067 -1.7155 -4.6300 42 1 1.3113 -0.3142 -5.0722 43 1 2.9921 -1.8351 -6.0765 44 1 1.9880 -3.2369 -5.6346 45 1 -1.0542 -3.6448 -6.2580 46 1 3.1805 -0.3424 -8.4752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700838831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:54 Heat of formation + Delta-G solvation = -42.231635 kcal Electronic energy + Delta-G solvation = -29397.641124 eV Core-core repulsion = 25131.192789 eV Total energy + Delta-G solvation = -4266.448336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.33874 -41.33293 -39.15061 -38.96247 -38.06692 -36.74930 -36.24762 -33.85306 -33.24214 -32.50134 -30.70658 -29.89251 -28.21310 -26.67446 -25.69182 -24.27702 -23.85584 -22.93928 -22.42543 -21.82930 -20.13048 -19.77306 -19.61519 -19.33954 -18.09999 -17.83137 -17.54330 -17.28735 -16.75004 -16.57048 -16.40389 -15.94882 -15.56525 -15.21156 -15.09943 -14.85917 -14.46415 -14.26510 -13.99716 -13.68287 -13.65896 -13.39092 -13.30976 -13.23588 -13.08735 -12.93599 -12.72640 -12.62977 -12.45148 -12.33655 -12.10882 -12.01573 -11.82204 -11.76195 -11.54552 -11.21756 -11.11473 -11.01381 -10.63557 -10.57793 -9.66904 -9.16286 -8.35707 -5.32991 0.49149 0.70786 1.11679 1.59309 1.63489 1.72944 1.84134 1.94718 2.19842 2.72942 2.84314 3.29942 3.39829 3.46189 3.66411 3.75750 3.79870 3.84693 3.98991 4.09288 4.10679 4.21235 4.25054 4.33561 4.35608 4.39917 4.43218 4.57082 4.62101 4.67489 4.74243 4.80787 4.96009 5.04236 5.06206 5.10019 5.19440 5.24258 5.29892 5.45890 5.64916 6.21595 6.43547 6.52202 6.53788 6.77754 7.07724 7.13681 7.97850 8.09257 9.15724 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.002365 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.718903 B =11838.639206 C =13003.147723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.135 3.865 3 H 0.082 0.918 4 C -0.129 4.129 5 C 0.168 3.832 6 H 0.069 0.931 7 N -0.737 5.737 8 C -0.328 4.328 9 H 0.074 0.926 10 C -0.101 4.101 11 N -0.978 5.978 12 Si 1.128 2.872 13 H -0.268 1.268 14 H -0.297 1.297 15 H -0.293 1.293 16 C 0.090 3.910 17 N -0.611 5.611 18 C 0.521 3.479 19 O -0.578 6.578 20 C -0.127 4.127 21 C -0.105 4.105 22 C 0.102 3.898 23 N -0.504 5.504 24 C 0.416 3.584 25 O -0.436 6.436 26 N -0.342 5.342 27 N -0.343 5.343 28 C 0.419 3.581 29 O -0.435 6.435 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.362 0.638 36 H 0.246 0.754 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.433 0.567 46 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 7.221 -15.596 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 H 0.100 0.900 4 C -0.168 4.168 5 C 0.058 3.942 6 H 0.087 0.913 7 N -0.378 5.378 8 C -0.459 4.459 9 H 0.091 0.909 10 C -0.292 4.292 11 N -0.625 5.625 12 Si 0.954 3.046 13 H -0.193 1.193 14 H -0.225 1.225 15 H -0.220 1.220 16 C -0.036 4.036 17 N -0.345 5.345 18 C 0.312 3.688 19 O -0.459 6.459 20 C -0.167 4.167 21 C -0.144 4.144 22 C -0.020 4.020 23 N -0.224 5.224 24 C 0.105 3.895 25 O -0.239 6.239 26 N -0.186 5.186 27 N -0.188 5.188 28 C 0.108 3.892 29 O -0.239 6.239 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.194 0.806 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.296 0.704 46 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -4.048 6.832 -16.594 18.396 hybrid contribution -0.727 0.536 1.161 1.471 sum -4.775 7.368 -15.433 17.755 Atomic orbital electron populations 1.22007 0.93789 1.01816 1.03129 1.21895 0.95097 0.95612 0.84165 0.89986 1.23091 0.95980 1.00273 0.97411 1.21304 0.94429 0.88883 0.89616 0.91310 1.42543 1.04090 1.24015 1.67128 1.20424 0.84651 1.07284 1.33558 0.90852 1.27055 1.09851 0.94056 0.98272 1.70945 1.01613 1.39640 1.50344 0.82599 0.70128 0.75860 0.76045 1.19251 1.22462 1.22050 1.22890 0.86143 0.96006 0.98536 1.48713 1.28350 1.48096 1.09330 1.20833 0.83627 0.81613 0.82726 1.90642 1.26974 1.45844 1.82402 1.21545 1.01555 1.01938 0.91649 1.21502 0.99511 1.00776 0.92641 1.22218 0.96028 1.03910 0.79861 1.47197 1.29825 1.24043 1.21337 1.21370 0.88889 0.87669 0.91544 1.84907 1.57094 1.23102 1.58839 1.78249 1.21198 1.06822 1.12358 1.78238 1.08113 1.11502 1.20921 1.21349 0.94636 0.86090 0.87104 1.84962 1.26127 1.31267 1.81504 0.90450 0.91442 0.93897 0.91610 0.89067 0.80587 0.94345 0.90568 0.92047 0.86325 0.86994 0.91790 0.91969 0.85602 0.86162 0.70409 0.70116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 8.60 71.98 0.62 -3.09 16 2 C 0.14 3.43 3.76 45.47 0.17 3.60 16 3 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.13 -3.56 6.13 31.98 0.20 -3.36 16 5 C 0.17 5.51 3.61 46.18 0.17 5.68 16 6 H 0.07 2.29 8.09 -2.38 -0.02 2.27 16 7 N -0.74 -32.20 5.15 -317.32 -1.63 -33.83 16 8 C -0.33 -16.30 9.96 84.03 0.84 -15.46 16 9 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 10 C -0.10 -5.36 5.50 84.86 0.47 -4.89 16 11 N -0.98 -57.16 13.70 21.65 0.30 -56.86 16 12 Si 1.13 47.92 29.92 68.60 2.05 49.98 16 13 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 14 H -0.30 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 16 C 0.09 2.48 6.24 86.73 0.54 3.02 16 17 N -0.61 -15.64 3.24 -788.12 -2.56 -18.20 16 18 C 0.52 12.82 7.63 87.66 0.67 13.49 16 19 O -0.58 -17.63 13.71 -3.07 -0.04 -17.67 16 20 C -0.13 -1.93 4.89 29.85 0.15 -1.78 16 21 C -0.11 -1.50 4.83 30.59 0.15 -1.36 16 22 C 0.10 0.96 6.01 86.38 0.52 1.48 16 23 N -0.50 -7.87 2.76 -755.17 -2.08 -9.95 16 24 C 0.42 7.98 9.15 179.72 1.65 9.62 16 25 O -0.44 -5.86 13.57 -89.41 -1.21 -7.08 16 26 N -0.34 -8.92 12.72 -173.65 -2.21 -11.13 16 27 N -0.34 -8.86 12.72 -173.66 -2.21 -11.06 16 28 C 0.42 7.76 9.15 179.72 1.65 9.41 16 29 O -0.43 -5.20 13.58 -89.50 -1.22 -6.41 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.89 6.10 -2.39 -0.01 1.88 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.95 7.93 -2.39 -0.02 1.93 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.36 16.92 6.59 -92.71 -0.61 16.30 16 36 H 0.25 14.26 6.77 -92.71 -0.63 13.63 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.85 8.03 -2.39 -0.02 1.83 16 39 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 42 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 43 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.12 0.82 8.14 -2.38 -0.02 0.81 16 45 H 0.43 1.81 9.06 -74.06 -0.67 1.14 16 46 H 0.44 0.09 9.06 -74.06 -0.67 -0.58 16 Total: -1.00 -78.24 386.79 -3.81 -82.05 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.77 Total: 23.83 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 7.77 Total: 16.35 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -10.39 Total: -141.04 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -2.47 Total: -31.16 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.05 Total: 49.98 kcal Total: -78.24 -3.81 -82.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700838831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.819 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds