Wall clock time and date at job start Tue Mar 31 2020 22:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46852 * 2 1 4 4 C 1.52998 * 109.47259 * 239.99563 * 2 1 3 5 5 C 1.52990 * 109.47435 * 174.99866 * 4 2 1 6 6 N 1.46498 * 109.47552 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00307 * 180.02562 * 6 5 4 8 8 O 1.21573 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.47691 * 120.00318 * 180.02562 * 7 6 5 10 10 C 1.39470 * 120.20634 * 6.48609 * 9 7 6 11 11 C 1.37977 * 119.97193 * 179.97438 * 10 9 7 12 12 C 1.38482 * 120.39546 * 0.02562 * 11 10 9 13 13 C 1.38079 * 120.42146 * 359.67719 * 12 11 10 14 14 C 1.39171 * 120.01814 * 0.60348 * 13 12 11 15 15 C 1.48225 * 120.19455 * 179.69919 * 14 13 12 16 16 C 1.39825 * 120.91496 * 57.66088 * 15 14 13 17 17 C 1.38002 * 119.01099 * 180.27250 * 16 15 14 18 18 N 1.31906 * 120.88859 * 359.97438 * 17 16 15 19 19 C 1.31912 * 122.02617 * 0.02562 * 18 17 16 20 20 C 1.37990 * 120.88845 * 0.02562 * 19 18 17 21 21 N 1.46501 * 109.47189 * 119.99787 * 2 1 3 22 22 C 1.36939 * 119.99818 * 275.00286 * 21 2 1 23 23 H 1.08002 * 120.00070 * 359.97438 * 22 21 2 24 24 C 1.38812 * 120.00069 * 180.02562 * 22 21 2 25 25 N 1.31620 * 120.00072 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99777 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47238 * 90.00285 * 26 24 22 28 28 H 1.48500 * 109.46787 * 210.00341 * 26 24 22 29 29 H 1.48493 * 109.47005 * 330.00079 * 26 24 22 30 30 H 1.09005 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47108 * 299.99960 * 1 2 3 32 32 H 1.09001 * 109.47161 * 60.00391 * 1 2 3 33 33 H 1.09000 * 109.46659 * 54.99833 * 4 2 1 34 34 H 1.08996 * 109.47261 * 295.00267 * 4 2 1 35 35 H 1.09003 * 109.47389 * 59.99801 * 5 4 2 36 36 H 1.09004 * 109.47281 * 300.00738 * 5 4 2 37 37 H 0.96994 * 119.99837 * 359.97438 * 6 5 4 38 38 H 1.08005 * 120.01334 * 359.96233 * 10 9 7 39 39 H 1.08001 * 119.79553 * 180.02562 * 11 10 9 40 40 H 1.07999 * 119.78863 * 179.97438 * 12 11 10 41 41 H 1.07999 * 119.98966 * 180.29590 * 13 12 11 42 42 H 1.07998 * 120.49700 * 0.29076 * 16 15 14 43 43 H 1.08004 * 119.55475 * 179.97438 * 17 16 15 44 44 H 1.08001 * 119.55436 * 179.97438 * 19 18 17 45 45 H 1.08003 * 120.49197 * 179.97438 * 20 19 18 46 46 H 0.96996 * 120.00257 * 94.99379 * 21 2 1 47 47 H 0.97002 * 119.99517 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3035 -2.5101 7 6 5.3740 -1.3397 -2.7753 8 8 6.1603 -0.7991 -2.0219 9 6 5.8663 -2.0349 -3.9818 10 6 4.9642 -2.5382 -4.9188 11 6 5.4294 -3.1865 -6.0445 12 6 6.7898 -3.3423 -6.2514 13 6 7.6975 -2.8451 -5.3373 14 6 7.2473 -2.1934 -4.1930 15 6 8.2181 -1.6640 -3.2059 16 6 9.1946 -0.7376 -3.5844 17 6 10.0822 -0.2749 -2.6344 18 7 10.0172 -0.6946 -1.3856 19 6 9.1119 -1.5674 -0.9871 20 6 8.1865 -2.0821 -1.8719 21 7 2.0184 -0.6906 1.1962 22 6 2.1491 -0.0074 2.3758 23 1 1.8926 1.0406 2.4241 24 6 2.6123 -0.6615 3.5091 25 7 2.7384 -0.0047 4.6427 26 14 3.0567 -2.4740 3.4252 27 1 4.4892 -2.6161 3.0609 28 1 2.8176 -3.1039 4.7486 29 1 2.2164 -3.1427 2.3997 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -0.2619 -2.1369 34 1 1.7517 -1.7715 -1.2055 35 1 3.9995 -1.0728 -0.4259 36 1 3.8532 0.4369 -1.3573 37 1 3.4259 -1.7351 -3.1109 38 1 3.9019 -2.4207 -4.7633 39 1 4.7283 -3.5747 -6.7685 40 1 7.1431 -3.8517 -7.1357 41 1 8.7570 -2.9663 -5.5080 42 1 9.2532 -0.3891 -4.6049 43 1 10.8403 0.4405 -2.9172 44 1 9.0953 -1.8840 0.0453 45 1 7.4483 -2.7967 -1.5389 46 1 2.2490 -1.6317 1.1527 47 1 3.0625 -0.4618 5.4345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713411209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:45 Heat of formation + Delta-G solvation = 41.574680 kcal Electronic energy + Delta-G solvation = -28588.609705 eV Core-core repulsion = 24736.644747 eV Total energy + Delta-G solvation = -3851.964958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.85818 -39.52388 -38.49765 -36.78348 -34.75666 -33.54803 -32.41249 -31.68393 -31.11835 -30.07446 -29.69478 -28.30052 -24.87032 -23.99340 -23.63490 -23.17033 -22.52493 -21.44134 -20.70713 -19.90059 -18.33898 -17.58568 -17.09164 -16.36631 -15.99220 -15.91687 -15.56747 -15.41019 -15.00526 -14.95421 -14.76660 -14.04030 -13.84375 -13.75792 -13.57961 -13.51422 -13.41621 -13.11802 -12.77611 -12.54015 -12.23189 -12.16527 -11.97122 -11.74378 -11.61651 -11.26399 -11.06138 -10.82125 -10.68869 -10.52300 -10.31104 -10.02711 -9.59453 -9.56903 -9.45400 -9.42575 -9.13671 -8.95791 -8.88859 -8.73116 -7.27088 -5.75207 -3.11041 0.37807 0.74427 1.24494 1.44417 2.70755 3.09629 3.37579 3.40932 3.46506 3.51294 3.88020 4.15142 4.38743 4.42994 4.53054 4.57651 4.60407 4.86569 4.93353 4.98114 5.06950 5.10536 5.14738 5.22299 5.30229 5.43534 5.44251 5.57458 5.59706 5.60257 5.79737 5.80136 5.89775 5.92161 5.95582 6.03436 6.04251 6.19719 6.22641 6.27660 6.31991 6.40369 6.44693 6.52296 6.73908 6.75707 6.95334 7.45820 8.00386 8.05747 8.18091 8.43631 9.21607 9.94082 10.12995 11.43282 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010423 B = 0.003278 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.777734 B = 8540.828760 C =10255.416078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.058 0.942 4 C -0.136 4.136 5 C 0.122 3.878 6 N -0.723 5.723 7 C 0.544 3.456 8 O -0.515 6.515 9 C -0.116 4.116 10 C -0.086 4.086 11 C -0.122 4.122 12 C -0.096 4.096 13 C -0.111 4.111 14 C 0.003 3.997 15 C 0.000 4.000 16 C -0.161 4.161 17 C 0.090 3.910 18 N -0.483 5.483 19 C 0.096 3.904 20 C -0.101 4.101 21 N -0.748 5.748 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.395 0.605 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.126 0.874 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 -7.701 -26.991 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.175 4.175 5 C -0.001 4.001 6 N -0.375 5.375 7 C 0.331 3.669 8 O -0.392 6.392 9 C -0.120 4.120 10 C -0.105 4.105 11 C -0.141 4.141 12 C -0.114 4.114 13 C -0.129 4.129 14 C 0.002 3.998 15 C -0.009 4.009 16 C -0.181 4.181 17 C -0.067 4.067 18 N -0.192 5.192 19 C -0.059 4.059 20 C -0.121 4.121 21 N -0.391 5.391 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.712 3.288 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.229 0.771 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.170 0.830 44 H 0.171 0.829 45 H 0.144 0.856 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.719 -6.779 -25.596 27.877 hybrid contribution -0.906 -1.833 -0.820 2.203 sum 7.814 -8.612 -26.416 28.862 Atomic orbital electron populations 1.22398 0.98611 1.00845 1.00547 1.20117 0.92062 0.95880 0.84929 0.92360 1.22114 0.93883 1.01731 0.99771 1.21479 0.94364 0.97581 0.86660 1.46078 1.06946 1.56893 1.27586 1.18212 0.82692 0.80773 0.85257 1.90897 1.54437 1.44860 1.48997 1.20083 0.93186 1.02223 0.96485 1.21300 0.99283 0.96273 0.93632 1.21182 0.95902 0.99365 0.97602 1.21289 0.93166 0.98068 0.98873 1.21216 1.00344 0.98253 0.93078 1.18734 0.91206 0.96173 0.93725 1.18823 0.93380 0.95583 0.93065 1.22034 0.96314 0.98638 1.01069 1.22540 0.97677 0.98007 0.88477 1.67570 1.22857 1.10870 1.17902 1.22584 0.90718 0.92817 0.99826 1.21940 0.97807 0.99847 0.92520 1.42822 1.79792 1.09278 1.07238 1.19054 1.36976 0.95504 0.85705 0.89185 1.24653 1.01383 0.97347 0.95586 1.69696 1.52569 1.35545 1.00302 0.86598 0.78543 0.86929 0.76735 1.20991 1.21777 1.20491 0.93649 0.92201 0.94227 0.91407 0.91724 0.90132 0.91208 0.77069 0.85223 0.85149 0.85190 0.85039 0.85254 0.83043 0.82860 0.85649 0.80741 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.18 3.24 2.89 -67.93 -0.20 3.04 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C -0.14 -1.87 4.87 -26.74 -0.13 -2.00 16 5 C 0.12 1.85 5.56 -4.05 -0.02 1.83 16 6 N -0.72 -8.88 5.50 -61.30 -0.34 -9.22 16 7 C 0.54 7.64 7.51 -12.40 -0.09 7.55 16 8 O -0.52 -9.19 12.33 5.30 0.07 -9.13 16 9 C -0.12 -1.30 5.88 -104.69 -0.62 -1.92 16 10 C -0.09 -0.69 9.52 -39.22 -0.37 -1.06 16 11 C -0.12 -0.79 10.02 -39.59 -0.40 -1.18 16 12 C -0.10 -0.62 10.03 -39.55 -0.40 -1.01 16 13 C -0.11 -0.90 9.65 -39.29 -0.38 -1.28 16 14 C 0.00 0.03 5.46 -104.56 -0.57 -0.54 16 15 C 0.00 0.00 4.18 -104.60 -0.44 -0.44 16 16 C -0.16 -1.86 9.77 -39.07 -0.38 -2.24 16 17 C 0.09 1.12 11.17 -17.61 -0.20 0.92 16 18 N -0.48 -7.20 10.34 -13.34 -0.14 -7.34 16 19 C 0.10 1.41 11.17 -17.61 -0.20 1.21 16 20 C -0.10 -1.43 6.96 -39.08 -0.27 -1.70 16 21 N -0.75 -17.10 4.38 -53.42 -0.23 -17.33 16 22 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 23 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 25 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 26 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 27 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.50 7.75 -51.93 -0.40 1.10 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.39 3.50 6.55 -40.82 -0.27 3.23 16 38 H 0.13 0.74 6.46 -52.48 -0.34 0.40 16 39 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 44 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 45 H 0.13 1.75 7.85 -52.48 -0.41 1.34 16 46 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 47 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -35.55 390.96 -9.99 -45.54 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.74 Total: 10.82 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -4.56 Total: -8.02 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.07 Total: -62.69 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.13 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.55 -9.99 -45.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713411209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.114 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds