Wall clock time and date at job start Tue Mar 31 2020 22:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46852 * 2 1 4 4 C 1.52998 * 109.47259 * 239.99563 * 2 1 3 5 5 C 1.52990 * 109.47435 * 174.99866 * 4 2 1 6 6 N 1.46498 * 109.47552 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00307 * 180.02562 * 6 5 4 8 8 O 1.21573 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.47691 * 120.00318 * 180.02562 * 7 6 5 10 10 C 1.39470 * 120.20634 * 6.48609 * 9 7 6 11 11 C 1.37977 * 119.97193 * 179.97438 * 10 9 7 12 12 C 1.38482 * 120.39546 * 0.02562 * 11 10 9 13 13 C 1.38079 * 120.42146 * 359.67719 * 12 11 10 14 14 C 1.39171 * 120.01814 * 0.60348 * 13 12 11 15 15 C 1.48225 * 120.19455 * 179.69919 * 14 13 12 16 16 C 1.39825 * 120.91496 * 57.66088 * 15 14 13 17 17 C 1.38002 * 119.01099 * 180.27250 * 16 15 14 18 18 N 1.31906 * 120.88859 * 359.97438 * 17 16 15 19 19 C 1.31912 * 122.02617 * 0.02562 * 18 17 16 20 20 C 1.37990 * 120.88845 * 0.02562 * 19 18 17 21 21 N 1.46501 * 109.47189 * 119.99787 * 2 1 3 22 22 C 1.36939 * 119.99818 * 275.00286 * 21 2 1 23 23 H 1.08002 * 120.00070 * 359.97438 * 22 21 2 24 24 C 1.38812 * 120.00069 * 180.02562 * 22 21 2 25 25 N 1.31620 * 120.00072 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99777 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47238 * 90.00285 * 26 24 22 28 28 H 1.48500 * 109.46787 * 210.00341 * 26 24 22 29 29 H 1.48493 * 109.47005 * 330.00079 * 26 24 22 30 30 H 1.09005 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47108 * 299.99960 * 1 2 3 32 32 H 1.09001 * 109.47161 * 60.00391 * 1 2 3 33 33 H 1.09000 * 109.46659 * 54.99833 * 4 2 1 34 34 H 1.08996 * 109.47261 * 295.00267 * 4 2 1 35 35 H 1.09003 * 109.47389 * 59.99801 * 5 4 2 36 36 H 1.09004 * 109.47281 * 300.00738 * 5 4 2 37 37 H 0.96994 * 119.99837 * 359.97438 * 6 5 4 38 38 H 1.08005 * 120.01334 * 359.96233 * 10 9 7 39 39 H 1.08001 * 119.79553 * 180.02562 * 11 10 9 40 40 H 1.07999 * 119.78863 * 179.97438 * 12 11 10 41 41 H 1.07999 * 119.98966 * 180.29590 * 13 12 11 42 42 H 1.07998 * 120.49700 * 0.29076 * 16 15 14 43 43 H 1.08004 * 119.55475 * 179.97438 * 17 16 15 44 44 H 1.08001 * 119.55436 * 179.97438 * 19 18 17 45 45 H 1.08003 * 120.49197 * 179.97438 * 20 19 18 46 46 H 0.96996 * 120.00257 * 94.99379 * 21 2 1 47 47 H 0.97002 * 119.99517 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3035 -2.5101 7 6 5.3740 -1.3397 -2.7753 8 8 6.1603 -0.7991 -2.0219 9 6 5.8663 -2.0349 -3.9818 10 6 4.9642 -2.5382 -4.9188 11 6 5.4294 -3.1865 -6.0445 12 6 6.7898 -3.3423 -6.2514 13 6 7.6975 -2.8451 -5.3373 14 6 7.2473 -2.1934 -4.1930 15 6 8.2181 -1.6640 -3.2059 16 6 9.1946 -0.7376 -3.5844 17 6 10.0822 -0.2749 -2.6344 18 7 10.0172 -0.6946 -1.3856 19 6 9.1119 -1.5674 -0.9871 20 6 8.1865 -2.0821 -1.8719 21 7 2.0184 -0.6906 1.1962 22 6 2.1491 -0.0074 2.3758 23 1 1.8926 1.0406 2.4241 24 6 2.6123 -0.6615 3.5091 25 7 2.7384 -0.0047 4.6427 26 14 3.0567 -2.4740 3.4252 27 1 4.4892 -2.6161 3.0609 28 1 2.8176 -3.1039 4.7486 29 1 2.2164 -3.1427 2.3997 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -0.2619 -2.1369 34 1 1.7517 -1.7715 -1.2055 35 1 3.9995 -1.0728 -0.4259 36 1 3.8532 0.4369 -1.3573 37 1 3.4259 -1.7351 -3.1109 38 1 3.9019 -2.4207 -4.7633 39 1 4.7283 -3.5747 -6.7685 40 1 7.1431 -3.8517 -7.1357 41 1 8.7570 -2.9663 -5.5080 42 1 9.2532 -0.3891 -4.6049 43 1 10.8403 0.4405 -2.9172 44 1 9.0953 -1.8840 0.0453 45 1 7.4483 -2.7967 -1.5389 46 1 2.2490 -1.6317 1.1527 47 1 3.0625 -0.4618 5.4345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713411209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:44 Heat of formation + Delta-G solvation = 17.715763 kcal Electronic energy + Delta-G solvation = -28589.644305 eV Core-core repulsion = 24736.644747 eV Total energy + Delta-G solvation = -3852.999558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.74119 -40.53123 -39.31037 -38.25226 -36.05804 -34.53081 -34.16245 -32.62674 -32.12388 -31.42447 -30.78883 -29.55422 -25.94342 -25.32286 -24.75008 -24.29961 -23.65417 -22.27485 -21.88364 -21.24814 -19.74107 -19.05332 -17.97134 -17.33513 -17.06196 -17.02962 -16.79904 -16.27601 -16.15052 -15.94148 -15.76543 -15.62321 -15.21424 -14.78752 -14.70691 -14.58903 -14.38733 -14.28688 -14.19004 -13.75653 -13.61671 -13.54613 -12.95294 -12.76929 -12.65407 -12.61192 -12.32192 -12.25566 -12.15877 -12.08015 -11.80069 -11.68828 -11.35821 -11.01328 -10.52487 -10.42821 -10.29362 -9.97677 -9.87882 -9.61170 -9.31314 -8.03170 -5.34901 -0.36548 0.10312 0.25884 0.59534 1.31789 1.37705 1.43199 1.84977 2.09093 2.46260 2.77667 2.90440 3.29289 3.38537 3.57890 3.60664 3.64713 3.81487 3.94596 3.98268 4.09059 4.13656 4.17360 4.24755 4.25080 4.40693 4.43856 4.60885 4.62624 4.69033 4.72848 4.80970 4.84341 4.88977 4.98384 5.05696 5.08248 5.12906 5.17344 5.30976 5.34310 5.38961 5.43600 5.44830 5.57212 5.77610 5.78597 5.87318 6.21613 6.51680 7.04237 7.08705 7.19947 7.85751 8.02980 9.19007 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010423 B = 0.003278 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.777734 B = 8540.828760 C =10255.416078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.040 0.960 4 C -0.118 4.118 5 C 0.131 3.869 6 N -0.708 5.708 7 C 0.538 3.462 8 O -0.565 6.565 9 C -0.140 4.140 10 C -0.083 4.083 11 C -0.115 4.115 12 C -0.085 4.085 13 C -0.112 4.112 14 C -0.022 4.022 15 C -0.002 4.002 16 C -0.160 4.160 17 C 0.082 3.918 18 N -0.513 5.513 19 C 0.072 3.928 20 C -0.116 4.116 21 N -0.751 5.751 22 C -0.222 4.222 23 H 0.055 0.945 24 C -0.067 4.067 25 N -0.987 5.987 26 Si 0.950 3.050 27 H -0.289 1.289 28 H -0.296 1.296 29 H -0.246 1.246 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.415 0.585 38 H 0.153 0.847 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.146 0.854 42 H 0.160 0.840 43 H 0.181 0.819 44 H 0.152 0.848 45 H 0.115 0.885 46 H 0.364 0.636 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -10.039 -32.382 34.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.060 3.940 3 H 0.058 0.942 4 C -0.156 4.156 5 C 0.007 3.993 6 N -0.361 5.361 7 C 0.326 3.674 8 O -0.445 6.445 9 C -0.143 4.143 10 C -0.101 4.101 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.130 4.130 14 C -0.023 4.023 15 C -0.010 4.010 16 C -0.179 4.179 17 C -0.075 4.075 18 N -0.223 5.223 19 C -0.083 4.083 20 C -0.136 4.136 21 N -0.395 5.395 22 C -0.353 4.353 23 H 0.073 0.927 24 C -0.258 4.258 25 N -0.638 5.638 26 Si 0.778 3.222 27 H -0.216 1.216 28 H -0.223 1.223 29 H -0.170 1.170 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.253 0.747 38 H 0.171 0.829 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.164 0.836 42 H 0.178 0.822 43 H 0.198 0.802 44 H 0.169 0.831 45 H 0.133 0.867 46 H 0.197 0.803 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.412 -9.145 -31.081 33.236 hybrid contribution -0.544 -1.008 0.676 1.330 sum 6.868 -10.153 -30.406 32.784 Atomic orbital electron populations 1.22247 0.96595 1.01614 1.00962 1.20426 0.93390 0.95215 0.84971 0.94196 1.21962 0.92240 1.02605 0.98820 1.21145 0.95486 0.96217 0.86490 1.45814 1.07032 1.56411 1.26808 1.18834 0.82626 0.80134 0.85782 1.90879 1.55671 1.47065 1.50890 1.19928 0.93878 1.04183 0.96306 1.21590 0.99942 0.95406 0.93198 1.21631 0.96624 0.97773 0.97219 1.21741 0.93006 0.96472 0.99037 1.21430 1.01656 0.97685 0.92250 1.18822 0.90869 0.97977 0.94597 1.19147 0.93786 0.95194 0.92888 1.22382 0.95459 0.97774 1.02315 1.23107 0.98431 0.98097 0.87882 1.67559 1.23530 1.11659 1.19512 1.22668 0.91638 0.93760 1.00206 1.21913 0.97670 1.00346 0.93681 1.42845 1.80061 1.09418 1.07148 1.19024 1.34456 0.94296 0.87522 0.92651 1.25458 1.02676 1.02302 0.95328 1.69882 1.55038 1.37635 1.01234 0.85482 0.78183 0.81377 0.77186 1.21553 1.22268 1.17044 0.92631 0.95330 0.90316 0.87206 0.89868 0.94175 0.93335 0.74670 0.82899 0.81665 0.81820 0.83647 0.82203 0.80174 0.83072 0.86708 0.80325 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.49 71.98 0.68 -4.05 16 2 C 0.17 5.86 2.89 44.99 0.13 6.00 16 3 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 4 C -0.12 -2.89 4.87 30.59 0.15 -2.74 16 5 C 0.13 3.92 5.56 86.38 0.48 4.40 16 6 N -0.71 -16.33 5.50 -466.13 -2.57 -18.90 16 7 C 0.54 15.04 7.51 86.74 0.65 15.69 16 8 O -0.57 -21.21 12.33 -3.95 -0.05 -21.26 16 9 C -0.14 -2.89 5.88 -19.91 -0.12 -3.01 16 10 C -0.08 -1.00 9.52 22.50 0.21 -0.78 16 11 C -0.11 -0.86 10.02 22.27 0.22 -0.64 16 12 C -0.08 -0.67 10.03 22.29 0.22 -0.44 16 13 C -0.11 -1.48 9.65 22.46 0.22 -1.26 16 14 C -0.02 -0.45 5.46 -19.82 -0.11 -0.56 16 15 C 0.00 -0.05 4.18 -19.85 -0.08 -0.13 16 16 C -0.16 -3.61 9.77 22.60 0.22 -3.39 16 17 C 0.08 2.05 11.17 84.63 0.95 2.99 16 18 N -0.51 -16.16 10.34 -196.11 -2.03 -18.19 16 19 C 0.07 2.30 11.17 84.62 0.95 3.25 16 20 C -0.12 -3.53 6.96 22.60 0.16 -3.37 16 21 N -0.75 -34.34 4.38 -322.93 -1.41 -35.75 16 22 C -0.22 -12.81 10.41 84.03 0.87 -11.93 16 23 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 24 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 25 N -0.99 -65.38 13.97 21.65 0.30 -65.08 16 26 Si 0.95 47.18 27.74 68.60 1.90 49.09 16 27 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 29 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 30 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.54 7.75 -2.39 -0.02 1.52 16 36 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.41 5.91 6.55 -92.71 -0.61 5.31 16 38 H 0.15 0.99 6.46 -2.91 -0.02 0.98 16 39 H 0.17 0.15 8.06 -2.91 -0.02 0.13 16 40 H 0.16 0.22 8.06 -2.91 -0.02 0.20 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 44 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 45 H 0.11 3.55 7.85 -2.91 -0.02 3.53 16 46 H 0.36 16.05 5.66 -92.71 -0.52 15.53 16 47 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -85.06 390.96 2.22 -82.84 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.20 Total: 30.80 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 6.27 Total: -3.55 kcal Atomic # 7 Polarization: -132.21 SS G_CDS: -5.71 Total: -137.91 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.90 Total: 49.09 kcal Total: -85.06 2.22 -82.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713411209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.554 kcal (2) G-P(sol) polarization free energy of solvation -85.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds