Wall clock time and date at job start Tue Mar 31 2020 23:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21517 * 119.99933 * 0.02562 * 16 15 14 18 18 C 1.48176 * 120.00097 * 179.97438 * 16 15 14 19 19 C 1.39104 * 119.66775 * 180.02562 * 18 16 15 20 20 C 1.39726 * 118.91831 * 179.97438 * 19 18 16 21 21 C 1.48371 * 120.87359 * 179.97438 * 20 19 18 22 22 C 1.39344 * 120.12186 * 359.72850 * 21 20 19 23 23 C 1.38014 * 119.87656 * 179.71945 * 22 21 20 24 24 C 1.38319 * 120.12058 * 0.55137 * 23 22 21 25 25 C 1.38323 * 120.24757 * 359.71947 * 24 23 22 26 26 C 1.38015 * 120.12461 * 0.02562 * 25 24 23 27 27 C 1.39730 * 118.25040 * 359.97438 * 20 19 18 28 28 C 1.38316 * 119.21951 * 359.97438 * 27 20 19 29 29 N 1.31578 * 121.02719 * 359.74733 * 28 27 20 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 32 32 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 33 33 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 34 34 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 37 37 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 38 38 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 39 39 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 40 40 H 1.08004 * 120.54018 * 359.97438 * 19 18 16 41 41 H 1.08001 * 120.06343 * 359.97438 * 22 21 20 42 42 H 1.07997 * 119.94129 * 180.26693 * 23 22 21 43 43 H 1.08001 * 119.88218 * 179.73965 * 24 23 22 44 44 H 1.08000 * 119.94102 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.06898 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.38913 * 179.97438 * 27 20 19 47 47 H 1.07998 * 119.48539 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 1.9557 -0.1505 6.0117 10 14 0.6536 1.8766 4.6422 11 1 -0.7997 1.5720 4.6600 12 1 0.9828 2.7850 5.7698 13 1 1.0059 2.5339 3.3580 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6276 -1.4451 -3.7795 18 6 1.6040 0.3521 -4.8727 19 6 1.9622 -0.1174 -6.1322 20 6 1.5835 0.6162 -7.2595 21 6 1.9429 0.1559 -8.6235 22 6 2.6723 -1.0189 -8.7954 23 6 2.9990 -1.4454 -10.0667 24 6 2.6134 -0.7032 -11.1684 25 6 1.8941 0.4667 -11.0033 26 6 1.5574 0.9000 -9.7369 27 6 0.8574 1.7946 -7.0686 28 6 0.5404 2.1914 -5.7820 29 7 0.9075 1.4748 -4.7414 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2950 35 1 1.1483 0.8591 2.3518 36 1 1.6960 0.3485 6.8020 37 1 3.1264 -0.7994 -1.2056 38 1 1.6054 -1.7198 -1.2953 39 1 1.1483 0.8592 -2.3518 40 1 2.5238 -1.0339 -6.2370 41 1 2.9780 -1.5967 -7.9357 42 1 3.5605 -2.3580 -10.2014 43 1 2.8747 -1.0384 -12.1613 44 1 1.5959 1.0426 -11.8669 45 1 0.9954 1.8133 -9.6090 46 1 0.5473 2.3887 -7.9156 47 1 -0.0203 3.1018 -5.6294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714442022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:16 Heat of formation + Delta-G solvation = 32.702408 kcal Electronic energy + Delta-G solvation = -27045.290199 eV Core-core repulsion = 23192.940511 eV Total energy + Delta-G solvation = -3852.349689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11262 -39.72974 -38.92099 -36.96076 -34.63933 -34.14152 -32.55035 -32.10739 -31.26566 -30.48259 -30.08445 -26.89588 -25.96098 -24.82298 -24.41630 -22.75418 -22.19548 -21.82738 -20.62586 -20.08713 -18.57017 -17.68352 -17.25939 -16.97791 -16.24132 -15.90973 -15.75397 -15.65161 -15.02053 -14.82167 -14.70603 -14.53340 -14.18661 -14.03536 -13.82421 -13.70899 -13.58314 -13.30520 -13.13791 -12.59988 -12.56448 -12.43823 -12.16697 -11.82847 -11.43445 -11.41597 -11.03269 -10.91084 -10.76175 -10.66768 -10.59452 -10.42363 -10.09650 -9.88259 -9.67085 -9.56454 -9.49909 -9.07940 -8.90941 -8.88236 -7.21251 -5.75013 -3.10438 -0.02354 0.37606 0.85917 1.32052 2.51822 2.93231 3.25877 3.38016 3.40367 3.45961 3.61440 3.76537 3.91701 4.14252 4.38894 4.43076 4.52052 4.55435 4.60380 4.61922 4.84374 4.89069 4.99000 5.01369 5.12235 5.16011 5.26627 5.28650 5.47858 5.48526 5.53461 5.55570 5.69735 5.76562 5.86996 5.90568 5.90927 5.97060 6.03674 6.10539 6.13784 6.26236 6.38679 6.40046 6.48575 6.68095 6.77751 7.21291 7.50998 8.01587 8.04462 8.43922 9.23097 9.95283 10.15136 11.43455 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030547 B = 0.001688 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.403558 B =16580.848987 C =17342.976798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.124 3.876 15 N -0.703 5.703 16 C 0.567 3.433 17 O -0.534 6.534 18 C 0.089 3.911 19 C -0.106 4.106 20 C -0.005 4.005 21 C -0.056 4.056 22 C -0.100 4.100 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.102 4.102 27 C -0.148 4.148 28 C 0.105 3.895 29 N -0.460 5.460 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.151 0.849 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.142 0.858 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 3.921 -38.806 39.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.714 3.286 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.001 3.999 15 N -0.354 5.354 16 C 0.351 3.649 17 O -0.411 6.411 18 C -0.049 4.049 19 C -0.127 4.127 20 C -0.013 4.013 21 C -0.056 4.056 22 C -0.118 4.118 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.168 4.168 28 C -0.054 4.054 29 N -0.172 5.172 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.194 0.806 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.248 0.752 40 H 0.168 0.832 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.160 0.840 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.241 3.277 -37.780 37.988 hybrid contribution -0.753 1.370 -0.791 1.752 sum -2.994 4.647 -38.571 38.965 Atomic orbital electron populations 1.21820 0.94697 1.02272 1.01360 1.21609 0.96738 1.00642 0.94415 0.90465 1.20550 0.97210 0.94226 0.84280 1.42684 1.67999 1.27006 1.02311 1.19075 1.29492 1.07072 0.81715 0.89164 1.24664 1.00813 0.98601 0.95087 1.69700 1.51342 1.40303 0.96892 0.86554 0.80447 0.84657 0.76914 1.21076 1.21728 1.20353 1.21490 1.00497 0.95355 0.82556 1.45907 1.56200 1.27980 1.05278 1.17825 0.79819 0.84412 0.82827 1.90796 1.40210 1.23706 1.86395 1.21132 0.97201 0.93049 0.93550 1.22183 0.98717 1.00750 0.91054 1.19121 0.95684 0.94089 0.92412 1.18637 0.99895 0.95977 0.91122 1.21363 0.96994 0.95438 0.98031 1.21165 1.00023 1.00123 0.92246 1.21320 0.97572 0.94959 0.99073 1.21125 0.98793 0.96868 0.97054 1.21239 0.99410 0.99465 0.91901 1.22423 0.98507 0.96506 0.99331 1.22740 0.96651 0.98586 0.87382 1.67540 1.09361 1.05003 1.35303 0.92365 0.91840 0.93430 0.95238 0.95075 0.80614 0.93083 0.90838 0.90838 0.75245 0.83157 0.85190 0.85413 0.85715 0.85559 0.85494 0.84000 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.94 37.16 0.33 -1.70 16 2 C -0.11 -1.71 2.46 -90.62 -0.22 -1.93 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.17 3.16 5.65 -4.04 -0.02 3.14 16 5 N -0.75 -17.90 5.13 -59.91 -0.31 -18.21 16 6 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 8 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 9 N -0.93 -29.60 13.97 55.49 0.78 -28.83 16 10 Si 0.88 22.18 27.74 -169.99 -4.71 17.46 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 13 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 14 C 0.12 1.69 5.06 -4.04 -0.02 1.67 16 15 N -0.70 -8.84 5.27 -61.14 -0.32 -9.16 16 16 C 0.57 7.69 7.81 -12.18 -0.10 7.60 16 17 O -0.53 -8.63 16.32 5.35 0.09 -8.54 16 18 C 0.09 1.02 6.75 -83.06 -0.56 0.46 16 19 C -0.11 -1.07 9.02 -38.70 -0.35 -1.42 16 20 C -0.01 -0.04 5.91 -104.61 -0.62 -0.66 16 21 C -0.06 -0.42 5.88 -104.90 -0.62 -1.04 16 22 C -0.10 -0.72 9.45 -39.25 -0.37 -1.09 16 23 C -0.12 -0.70 10.03 -39.63 -0.40 -1.10 16 24 C -0.11 -0.58 10.04 -39.52 -0.40 -0.98 16 25 C -0.12 -0.62 10.03 -39.63 -0.40 -1.02 16 26 C -0.10 -0.60 9.45 -39.25 -0.37 -0.97 16 27 C -0.15 -0.97 9.51 -39.00 -0.37 -1.34 16 28 C 0.11 0.78 11.17 -17.63 -0.20 0.58 16 29 N -0.46 -4.73 9.53 -9.88 -0.09 -4.83 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.00 7.18 -51.93 -0.37 0.62 16 32 H 0.05 0.56 7.18 -51.93 -0.37 0.19 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.36 8.31 4.71 -40.82 -0.19 8.12 16 36 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.41 4.68 6.98 -40.82 -0.28 4.39 16 40 H 0.15 1.45 5.92 -52.48 -0.31 1.14 16 41 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.12 0.39 8.06 -52.49 -0.42 -0.03 16 44 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 45 H 0.13 0.48 6.29 -52.49 -0.33 0.14 16 46 H 0.14 0.50 6.33 -52.48 -0.33 0.17 16 47 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 390.16 15.07 5.88 5.88 Total: -1.00 -34.85 390.16 -9.97 -44.82 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.35 Total: 8.30 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -4.93 Total: -6.90 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.05 Total: -61.03 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.85 -9.97 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714442022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.524 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds