Wall clock time and date at job start Tue Mar 31 2020 23:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46905 * 109.47028 * 184.99640 * 4 2 1 6 6 C 1.46897 * 111.00138 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46808 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00632 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99664 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99593 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00488 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99846 * 179.97438 * 10 9 7 13 13 N 1.31419 * 119.99716 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00440 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46964 * 59.99704 * 14 12 10 16 16 H 1.48494 * 109.47631 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46888 * 300.00068 * 14 12 10 18 18 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 19 19 C 1.34781 * 119.99732 * 274.99921 * 18 2 1 20 20 O 1.21700 * 119.99933 * 359.97438 * 19 18 2 21 21 C 1.46652 * 120.00014 * 180.02562 * 19 18 2 22 22 C 1.35149 * 126.37864 * 359.69007 * 21 19 18 23 23 N 1.37007 * 107.87687 * 179.84411 * 22 21 19 24 24 C 1.46507 * 125.65395 * 180.16280 * 23 22 21 25 25 C 1.34621 * 108.70174 * 0.42176 * 23 22 21 26 26 O 1.21726 * 125.73332 * 179.75956 * 25 23 22 27 27 N 1.34758 * 108.53904 * 359.74242 * 25 23 22 28 28 C 1.46504 * 126.17896 * 180.02562 * 27 25 23 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.00906 * 110.99658 * 56.04875 * 5 4 2 35 35 H 1.08996 * 109.47257 * 300.00577 * 6 5 4 36 36 H 1.09004 * 109.46984 * 60.00897 * 6 5 4 37 37 H 0.96999 * 120.00267 * 359.97438 * 9 7 6 38 38 H 0.96998 * 119.99905 * 180.02562 * 13 12 10 39 39 H 0.96998 * 120.00364 * 94.99433 * 18 2 1 40 40 H 1.08005 * 126.06006 * 359.96055 * 22 21 19 41 41 H 1.08998 * 109.47265 * 180.27762 * 24 23 22 42 42 H 1.08996 * 109.47346 * 300.28316 * 24 23 22 43 43 H 1.09007 * 109.46605 * 60.27673 * 24 23 22 44 44 H 1.08996 * 109.47401 * 269.95973 * 28 27 25 45 45 H 1.09001 * 109.47168 * 29.96367 * 28 27 25 46 46 H 1.09007 * 109.46928 * 149.95807 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.0302 -1.5159 -2.3763 7 6 5.5315 -1.6054 -2.2803 8 8 6.1065 -1.1412 -1.3186 9 7 6.2352 -2.2014 -3.2633 10 6 7.6009 -2.2833 -3.1757 11 1 8.1129 -1.8699 -2.3193 12 6 8.3265 -2.8981 -4.1887 13 7 7.7034 -3.4016 -5.2306 14 14 10.1873 -3.0091 -4.0699 15 1 10.5610 -3.7682 -2.8495 16 1 10.7192 -3.7064 -5.2682 17 1 10.7611 -1.6414 -3.9971 18 7 2.0184 -0.6907 1.1961 19 6 2.1472 -0.0183 2.3571 20 8 1.8581 1.1626 2.4117 21 6 2.6366 -0.7095 3.5544 22 6 2.9882 -2.0116 3.6408 23 7 3.3915 -2.2538 4.9276 24 6 3.8584 -3.5412 5.4482 25 6 3.2822 -1.1142 5.6359 26 8 3.5549 -0.9810 6.8148 27 7 2.8207 -0.1456 4.8207 28 6 2.5596 1.2470 5.1935 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1584 -2.1370 34 1 3.7996 -1.2884 -0.3434 35 1 3.6093 -2.5200 -2.4295 36 1 3.7557 -0.9588 -3.2721 37 1 5.7754 -2.5730 -4.0322 38 1 8.2098 -3.8312 -5.9376 39 1 2.2491 -1.6318 1.1526 40 1 2.9585 -2.7328 2.8374 41 1 4.1069 -3.4375 6.5044 42 1 3.0723 -4.2871 5.3314 43 1 4.7437 -3.8568 4.8959 44 1 1.5296 1.3442 5.5367 45 1 3.2385 1.5423 5.9935 46 1 2.7164 1.8904 4.3278 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715965674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:52 Heat of formation + Delta-G solvation = -75.011044 kcal Electronic energy + Delta-G solvation = -29281.128344 eV Core-core repulsion = 25013.258586 eV Total energy + Delta-G solvation = -4267.869757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.54995 -40.76832 -40.05987 -38.12624 -37.79671 -36.40464 -35.97429 -35.07233 -33.23468 -32.73985 -31.06306 -28.98025 -28.85628 -27.11514 -26.65594 -24.85744 -24.36495 -22.45937 -21.60036 -21.46936 -21.01839 -19.88733 -19.20302 -17.94815 -17.89912 -17.69693 -17.20684 -16.85718 -16.42668 -16.34041 -16.20191 -16.00348 -15.78469 -15.43799 -15.32624 -15.10479 -14.93229 -14.68252 -14.27378 -14.01557 -13.96880 -13.53228 -13.45376 -13.32885 -13.28760 -13.04819 -12.96804 -12.74443 -12.62566 -12.54602 -12.40429 -12.11770 -11.89756 -11.83328 -11.47347 -11.09090 -10.96006 -10.32573 -10.13447 -9.97998 -9.24030 -8.92897 -8.44393 -5.92363 0.29794 1.08370 1.40938 1.43540 1.53466 1.62443 1.82273 2.10372 2.20502 2.30756 2.56132 2.95447 3.23866 3.53796 3.59166 3.88079 3.94513 4.02285 4.12223 4.28005 4.29802 4.33794 4.38041 4.44541 4.51289 4.56736 4.66001 4.67494 4.76611 4.77934 4.83526 4.86726 4.91488 5.13250 5.22664 5.36724 5.43494 5.49453 5.59899 5.91807 6.07505 6.13993 6.46455 6.49780 6.63936 7.00637 7.16259 7.16782 7.61132 8.16830 8.72642 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.002537 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.218276 B =11033.084072 C =12789.252967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.151 3.849 3 H 0.070 0.930 4 C 0.056 3.944 5 N -0.689 5.689 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.625 6.625 9 N -0.574 5.574 10 C -0.333 4.333 11 H 0.077 0.923 12 C -0.011 4.011 13 N -0.920 5.920 14 Si 0.988 3.012 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.275 1.275 18 N -0.697 5.697 19 C 0.599 3.401 20 O -0.572 6.572 21 C -0.070 4.070 22 C 0.091 3.909 23 N -0.518 5.518 24 C 0.083 3.917 25 C 0.629 3.371 26 O -0.610 6.610 27 N -0.517 5.517 28 C 0.101 3.899 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.345 0.655 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.412 0.588 40 H 0.239 0.761 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.803 -3.108 10.955 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.046 3.954 3 H 0.088 0.912 4 C -0.073 4.073 5 N -0.322 5.322 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.462 4.462 11 H 0.095 0.905 12 C -0.211 4.211 13 N -0.561 5.561 14 Si 0.812 3.188 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.201 1.201 18 N -0.350 5.350 19 C 0.386 3.614 20 O -0.452 6.452 21 C -0.178 4.178 22 C -0.040 4.040 23 N -0.233 5.233 24 C -0.057 4.057 25 C 0.332 3.668 26 O -0.492 6.492 27 N -0.237 5.237 28 C -0.040 4.040 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.164 0.836 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.249 0.751 40 H 0.255 0.745 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.249 -1.333 12.065 21.092 hybrid contribution 0.848 -1.180 -0.089 1.456 sum -16.401 -2.513 11.976 20.463 Atomic orbital electron populations 1.22074 0.92913 1.03435 1.02726 1.21039 0.94796 0.97042 0.82479 0.91200 1.22379 0.86079 1.00892 0.97929 1.59969 1.10338 1.57731 1.04175 1.21544 0.89905 0.99337 0.95856 1.21005 0.90884 0.81975 0.83725 1.90508 1.72923 1.52675 1.34993 1.41928 1.06723 1.51729 1.20730 1.19595 0.83289 1.36736 1.06622 0.90500 1.25959 1.04545 0.95959 0.94602 1.69655 1.38214 1.38526 1.09662 0.85059 0.77276 0.78473 0.77978 1.19606 1.19572 1.20078 1.45556 1.66612 1.14387 1.08396 1.16719 0.76937 0.85530 0.82235 1.90789 1.52454 1.16622 1.85359 1.19780 1.16716 0.93412 0.87885 1.22796 0.97543 0.95257 0.88394 1.45191 1.56777 1.11376 1.09946 1.22243 1.02470 0.79666 1.01283 1.16410 0.83547 0.81715 0.85151 1.90981 1.61660 1.82835 1.13689 1.45292 1.58517 1.11314 1.08555 1.21869 1.02439 0.77135 1.02550 0.93501 0.89972 0.90409 0.91627 0.88297 0.83594 0.90545 0.87790 0.76899 0.91342 0.75091 0.74520 0.90041 0.87085 0.88194 0.90517 0.90137 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.48 71.98 0.68 -1.25 16 2 C 0.15 2.55 2.88 44.99 0.13 2.68 16 3 H 0.07 1.67 7.58 -2.39 -0.02 1.65 16 4 C 0.06 0.88 5.30 86.30 0.46 1.34 16 5 N -0.69 -17.67 6.12 -517.94 -3.17 -20.84 16 6 C 0.07 1.89 6.17 85.56 0.53 2.42 16 7 C 0.44 19.19 7.82 87.66 0.69 19.88 16 8 O -0.62 -32.85 15.78 -3.05 -0.05 -32.89 16 9 N -0.57 -27.78 5.29 -306.98 -1.62 -29.40 16 10 C -0.33 -18.27 9.68 84.04 0.81 -17.45 16 11 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 12 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 13 N -0.92 -48.02 13.05 21.66 0.28 -47.74 16 14 Si 0.99 41.89 29.55 68.60 2.03 43.92 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 16 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 N -0.70 -11.20 4.34 -446.51 -1.94 -13.14 16 19 C 0.60 13.54 7.75 86.44 0.67 14.21 16 20 O -0.57 -16.98 14.49 -4.35 -0.06 -17.05 16 21 C -0.07 -1.49 6.88 39.35 0.27 -1.22 16 22 C 0.09 1.29 10.91 83.17 0.91 2.20 16 23 N -0.52 -9.58 3.12 -679.63 -2.12 -11.70 16 24 C 0.08 0.89 11.16 127.77 1.43 2.32 16 25 C 0.63 17.32 8.49 179.11 1.52 18.84 16 26 O -0.61 -21.08 17.35 -4.43 -0.08 -21.16 16 27 N -0.52 -13.32 3.21 -667.04 -2.14 -15.46 16 28 C 0.10 2.37 10.58 127.77 1.35 3.73 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.34 8.99 7.28 -89.69 -0.65 8.34 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.40 18.10 7.90 -92.71 -0.73 17.37 16 38 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 39 H 0.41 4.01 7.00 -92.71 -0.65 3.36 16 40 H 0.24 0.85 7.37 -2.91 -0.02 0.82 16 41 H 0.08 1.14 7.68 -2.39 -0.02 1.12 16 42 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 46 H 0.09 2.31 6.45 -2.38 -0.02 2.30 16 Total: -1.00 -83.94 392.44 0.05 -83.90 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.99 Total: 33.98 kcal Atomic # 6 Polarization: 37.68 SS G_CDS: 9.91 Total: 47.59 kcal Atomic # 7 Polarization: -127.57 SS G_CDS: -10.71 Total: -138.28 kcal Atomic # 8 Polarization: -70.91 SS G_CDS: -0.19 Total: -71.10 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -83.94 0.05 -83.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715965674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.885 kcal (2) G-P(sol) polarization free energy of solvation -83.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds