Wall clock time and date at job start Tue Mar 31 2020 23:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47438 * 2 1 4 4 C 1.53000 * 109.46887 * 239.99217 * 2 1 3 5 5 N 1.46498 * 109.47256 * 185.00384 * 4 2 1 6 6 C 1.46502 * 120.00048 * 270.00334 * 5 4 2 7 7 C 1.36932 * 120.00134 * 90.00098 * 5 4 2 8 8 H 1.08001 * 120.00139 * 342.69416 * 7 5 4 9 9 C 1.38814 * 119.99885 * 162.97001 * 7 5 4 10 10 N 1.31620 * 120.00451 * 345.50016 * 9 7 5 11 11 Si 1.86800 * 119.99849 * 165.49814 * 9 7 5 12 12 H 1.48498 * 109.46964 * 90.00008 * 11 9 7 13 13 H 1.48506 * 109.47394 * 209.99993 * 11 9 7 14 14 H 1.48504 * 109.47093 * 330.00134 * 11 9 7 15 15 N 1.46504 * 109.46886 * 119.99867 * 2 1 3 16 16 C 1.34778 * 120.00048 * 274.99497 * 15 2 1 17 17 O 1.21557 * 119.99414 * 0.02562 * 16 15 2 18 18 C 1.47852 * 120.00185 * 179.97438 * 16 15 2 19 19 C 1.39621 * 120.50426 * 359.72859 * 18 16 15 20 20 N 1.31694 * 120.83191 * 179.69569 * 19 18 16 21 21 C 1.31812 * 122.01498 * 0.59317 * 20 19 18 22 22 C 1.39408 * 120.91210 * 359.69239 * 21 20 19 23 23 C 1.48409 * 120.46786 * 179.97438 * 22 21 20 24 24 C 1.39328 * 120.11955 * 179.74738 * 23 22 21 25 25 C 1.38017 * 119.87549 * 179.76744 * 24 23 22 26 26 C 1.38327 * 120.12131 * 0.52948 * 25 24 23 27 27 C 1.38319 * 120.24242 * 359.70044 * 26 25 24 28 28 C 1.38021 * 120.11651 * 0.04449 * 27 26 25 29 29 C 1.39509 * 119.06365 * 0.02562 * 22 21 20 30 30 H 1.08996 * 109.47702 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46839 * 300.00538 * 1 2 3 32 32 H 1.08995 * 109.47167 * 60.00203 * 1 2 3 33 33 H 1.09003 * 109.46852 * 65.00359 * 4 2 1 34 34 H 1.08994 * 109.47395 * 305.00569 * 4 2 1 35 35 H 1.08998 * 109.47417 * 265.06009 * 6 5 4 36 36 H 1.09010 * 109.47178 * 25.05834 * 6 5 4 37 37 H 1.09001 * 109.47396 * 145.05647 * 6 5 4 38 38 H 0.96998 * 120.00313 * 179.97438 * 10 9 7 39 39 H 0.96998 * 120.00155 * 94.99681 * 15 2 1 40 40 H 1.08000 * 119.57937 * 359.97310 * 19 18 16 41 41 H 1.07993 * 119.54291 * 179.67832 * 21 20 19 42 42 H 1.08001 * 120.06226 * 0.02562 * 24 23 22 43 43 H 1.08001 * 119.94134 * 180.27535 * 25 24 23 44 44 H 1.08000 * 119.87415 * 179.72159 * 26 25 24 45 45 H 1.07993 * 119.93828 * 180.02562 * 27 26 25 46 46 H 1.08004 * 120.05436 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.91158 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.4999 -0.8267 -1.1905 6 6 4.3343 0.2337 -1.7613 7 6 4.0848 -1.9161 -0.6022 8 1 3.5077 -2.5498 0.0550 9 6 5.4210 -2.2028 -0.8459 10 7 6.0483 -1.6175 -1.8440 11 14 6.3289 -3.4192 0.2429 12 1 6.1900 -4.7864 -0.3197 13 1 7.7666 -3.0524 0.3032 14 1 5.7517 -3.3858 1.6108 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3572 17 8 1.8576 1.1611 2.4117 18 6 2.6393 -0.7153 3.5646 19 6 2.9684 -2.0712 3.5154 20 7 3.4131 -2.6971 4.5854 21 6 3.5566 -2.0849 5.7439 22 6 3.2458 -0.7331 5.8829 23 6 3.4106 -0.0538 7.1921 24 6 3.1027 1.2989 7.3215 25 6 3.2533 1.9244 8.5426 26 6 3.7193 1.2136 9.6339 27 6 4.0310 -0.1283 9.5098 28 6 3.8791 -0.7650 8.2947 29 6 2.7766 -0.0281 4.7742 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -0.1585 -2.1369 34 1 1.6053 -1.7199 -1.2950 35 1 4.6152 -0.0336 -2.7800 36 1 3.7755 1.1696 -1.7722 37 1 5.2330 0.3542 -1.1564 38 1 6.9820 -1.8175 -2.0141 39 1 2.2489 -1.6318 1.1527 40 1 2.8612 -2.6126 2.5870 41 1 3.9198 -2.6383 6.5972 42 1 2.7429 1.8559 6.4690 43 1 3.0107 2.9718 8.6452 44 1 3.8398 1.7082 10.5864 45 1 4.3940 -0.6786 10.3652 46 1 4.1224 -1.8130 8.1991 47 1 2.5264 1.0199 4.8484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716021822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:09 Heat of formation + Delta-G solvation = 50.524315 kcal Electronic energy + Delta-G solvation = -28857.819156 eV Core-core repulsion = 25006.242283 eV Total energy + Delta-G solvation = -3851.576873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.71985 -39.37820 -38.57646 -36.43251 -34.18199 -33.58292 -32.54045 -31.40032 -31.03498 -30.10698 -29.10278 -26.23314 -25.66802 -24.92874 -24.25985 -22.70386 -21.75246 -21.67234 -20.40445 -19.91954 -18.22696 -17.19800 -16.65445 -16.61644 -16.44222 -15.46106 -15.36208 -15.10901 -14.69943 -14.58117 -14.18572 -13.91042 -13.88531 -13.71414 -13.49500 -13.08421 -13.04703 -12.96465 -12.90125 -12.37226 -12.21215 -11.98652 -11.65016 -11.60053 -11.23461 -11.10453 -10.89465 -10.82836 -10.44147 -10.39180 -10.32970 -10.08286 -9.93706 -9.89952 -9.57188 -9.31389 -9.21743 -8.59331 -8.53609 -8.34139 -6.85485 -5.77779 -3.19914 0.33135 0.85281 1.14015 1.63889 3.08487 3.34985 3.43084 3.44448 3.50651 3.59649 4.01264 4.17724 4.37748 4.44470 4.55624 4.69350 4.71649 4.79262 4.88188 5.00897 5.12204 5.20397 5.27425 5.35620 5.40748 5.43814 5.57398 5.68971 5.74438 5.77511 5.86310 5.89381 6.01435 6.09799 6.14348 6.17273 6.24261 6.35161 6.40770 6.42299 6.47865 6.69714 6.73098 6.78457 7.01037 7.40838 7.59887 7.76942 7.81651 7.98047 8.30326 8.59446 9.16591 9.81303 10.28923 11.26913 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012119 B = 0.003253 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.912406 B = 8605.644236 C = 9955.736672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.080 0.920 4 C 0.141 3.859 5 N -0.601 5.601 6 C 0.165 3.835 7 C -0.253 4.253 8 H 0.065 0.935 9 C 0.004 3.996 10 N -0.904 5.904 11 Si 0.894 3.106 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.276 1.276 15 N -0.686 5.686 16 C 0.562 3.438 17 O -0.552 6.552 18 C -0.171 4.171 19 C 0.142 3.858 20 N -0.480 5.480 21 C 0.126 3.874 22 C -0.112 4.112 23 C -0.036 4.036 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.117 4.117 28 C -0.111 4.111 29 C -0.012 4.012 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.027 0.973 36 H -0.005 1.005 37 H 0.047 0.953 38 H 0.253 0.747 39 H 0.402 0.598 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 3.002 18.116 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.098 0.902 4 C 0.012 3.988 5 N -0.323 5.323 6 C 0.021 3.979 7 C -0.382 4.382 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.549 5.549 11 Si 0.723 3.277 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.201 1.201 15 N -0.336 5.336 16 C 0.347 3.653 17 O -0.432 6.432 18 C -0.176 4.176 19 C -0.015 4.015 20 N -0.188 5.188 21 C -0.032 4.032 22 C -0.114 4.114 23 C -0.036 4.036 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.139 4.139 27 C -0.135 4.135 28 C -0.129 4.129 29 C -0.038 4.038 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.014 0.986 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.240 0.760 40 H 0.180 0.820 41 H 0.177 0.823 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.781 2.917 17.946 19.777 hybrid contribution 0.689 -0.215 0.547 0.905 sum -7.093 2.702 18.493 19.990 Atomic orbital electron populations 1.22127 0.96302 1.01570 1.01784 1.21963 0.92333 0.98420 0.86356 0.90224 1.21057 0.86066 0.98330 0.93310 1.43878 0.98886 1.21293 1.68286 1.20806 0.93045 0.86002 0.98094 1.18967 0.94059 1.04168 1.20997 0.91718 1.24880 0.98060 0.99075 0.97439 1.70096 1.10784 1.45610 1.28395 0.86420 0.79616 0.80912 0.80702 1.21337 1.21629 1.20075 1.45873 1.64642 1.14358 1.08710 1.17899 0.77964 0.86395 0.83042 1.90715 1.51746 1.15400 1.85298 1.21079 1.05153 0.95843 0.95571 1.23163 0.90541 0.90838 0.97003 1.67693 1.12763 1.39163 0.99147 1.23060 0.93736 0.90951 0.95433 1.19697 1.03051 0.95130 0.93519 1.18602 0.99744 0.93557 0.91744 1.21318 0.99458 0.93834 0.98110 1.21116 0.99459 1.00096 0.92708 1.21238 0.99263 0.94571 0.98800 1.21085 1.00118 0.94956 0.97364 1.21220 0.99340 1.00022 0.92314 1.21756 0.91493 1.00528 0.90020 0.92778 0.92847 0.91908 0.92762 0.92931 0.95487 0.98599 0.93378 0.93703 0.76019 0.81964 0.82294 0.85422 0.85713 0.85998 0.85752 0.85541 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 2 C 0.12 2.01 2.88 -67.93 -0.20 1.82 16 3 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 4 C 0.14 2.64 5.30 -4.04 -0.02 2.62 16 5 N -0.60 -14.17 2.82 -181.12 -0.51 -14.68 16 6 C 0.17 4.03 8.97 59.85 0.54 4.56 16 7 C -0.25 -6.37 8.81 -15.06 -0.13 -6.51 16 8 H 0.07 1.51 6.40 -52.49 -0.34 1.18 16 9 C 0.00 0.11 5.09 -17.43 -0.09 0.02 16 10 N -0.90 -25.77 10.45 55.49 0.58 -25.19 16 11 Si 0.89 21.30 29.58 -169.99 -5.03 16.27 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 N -0.69 -12.02 4.44 -54.75 -0.24 -12.26 16 16 C 0.56 10.19 7.75 -12.33 -0.10 10.09 16 17 O -0.55 -11.24 16.08 5.32 0.09 -11.15 16 18 C -0.17 -2.77 5.89 -104.86 -0.62 -3.39 16 19 C 0.14 2.26 10.71 -17.09 -0.18 2.07 16 20 N -0.48 -7.44 10.33 -12.64 -0.13 -7.57 16 21 C 0.13 1.63 10.59 -17.12 -0.18 1.45 16 22 C -0.11 -1.44 5.89 -104.80 -0.62 -2.06 16 23 C -0.04 -0.40 5.88 -104.90 -0.62 -1.02 16 24 C -0.11 -1.15 9.44 -39.26 -0.37 -1.52 16 25 C -0.12 -1.03 10.03 -39.63 -0.40 -1.42 16 26 C -0.12 -0.98 10.04 -39.52 -0.40 -1.37 16 27 C -0.12 -0.96 10.03 -39.63 -0.40 -1.36 16 28 C -0.11 -1.05 9.44 -39.26 -0.37 -1.42 16 29 C -0.01 -0.17 9.07 -38.52 -0.35 -0.52 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 35 H 0.03 0.70 7.51 -51.93 -0.39 0.31 16 36 H 0.00 -0.10 8.04 -51.92 -0.42 -0.52 16 37 H 0.05 1.29 6.95 -51.93 -0.36 0.93 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.40 6.85 4.64 -40.82 -0.19 6.66 16 40 H 0.16 2.46 6.41 -52.49 -0.34 2.12 16 41 H 0.16 1.55 6.21 -52.49 -0.33 1.22 16 42 H 0.13 1.27 6.27 -52.49 -0.33 0.94 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.13 0.95 6.23 -52.48 -0.33 0.63 16 47 H 0.15 2.02 5.99 -52.49 -0.31 1.70 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -31.81 385.54 -9.81 -41.62 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.23 Total: 6.98 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -4.14 Total: 0.18 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.31 Total: -59.71 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.81 -9.81 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716021822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.143 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds