Wall clock time and date at job start Tue Mar 31 2020 23:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47438 * 2 1 4 4 C 1.53000 * 109.46887 * 239.99217 * 2 1 3 5 5 N 1.46498 * 109.47256 * 185.00384 * 4 2 1 6 6 C 1.46502 * 120.00048 * 270.00334 * 5 4 2 7 7 C 1.36932 * 120.00134 * 90.00098 * 5 4 2 8 8 H 1.08001 * 120.00139 * 342.69416 * 7 5 4 9 9 C 1.38814 * 119.99885 * 162.97001 * 7 5 4 10 10 N 1.31620 * 120.00451 * 345.50016 * 9 7 5 11 11 Si 1.86800 * 119.99849 * 165.49814 * 9 7 5 12 12 H 1.48498 * 109.46964 * 90.00008 * 11 9 7 13 13 H 1.48506 * 109.47394 * 209.99993 * 11 9 7 14 14 H 1.48504 * 109.47093 * 330.00134 * 11 9 7 15 15 N 1.46504 * 109.46886 * 119.99867 * 2 1 3 16 16 C 1.34778 * 120.00048 * 274.99497 * 15 2 1 17 17 O 1.21557 * 119.99414 * 0.02562 * 16 15 2 18 18 C 1.47852 * 120.00185 * 179.97438 * 16 15 2 19 19 C 1.39621 * 120.50426 * 359.72859 * 18 16 15 20 20 N 1.31694 * 120.83191 * 179.69569 * 19 18 16 21 21 C 1.31812 * 122.01498 * 0.59317 * 20 19 18 22 22 C 1.39408 * 120.91210 * 359.69239 * 21 20 19 23 23 C 1.48409 * 120.46786 * 179.97438 * 22 21 20 24 24 C 1.39328 * 120.11955 * 179.74738 * 23 22 21 25 25 C 1.38017 * 119.87549 * 179.76744 * 24 23 22 26 26 C 1.38327 * 120.12131 * 0.52948 * 25 24 23 27 27 C 1.38319 * 120.24242 * 359.70044 * 26 25 24 28 28 C 1.38021 * 120.11651 * 0.04449 * 27 26 25 29 29 C 1.39509 * 119.06365 * 0.02562 * 22 21 20 30 30 H 1.08996 * 109.47702 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46839 * 300.00538 * 1 2 3 32 32 H 1.08995 * 109.47167 * 60.00203 * 1 2 3 33 33 H 1.09003 * 109.46852 * 65.00359 * 4 2 1 34 34 H 1.08994 * 109.47395 * 305.00569 * 4 2 1 35 35 H 1.08998 * 109.47417 * 265.06009 * 6 5 4 36 36 H 1.09010 * 109.47178 * 25.05834 * 6 5 4 37 37 H 1.09001 * 109.47396 * 145.05647 * 6 5 4 38 38 H 0.96998 * 120.00313 * 179.97438 * 10 9 7 39 39 H 0.96998 * 120.00155 * 94.99681 * 15 2 1 40 40 H 1.08000 * 119.57937 * 359.97310 * 19 18 16 41 41 H 1.07993 * 119.54291 * 179.67832 * 21 20 19 42 42 H 1.08001 * 120.06226 * 0.02562 * 24 23 22 43 43 H 1.08001 * 119.94134 * 180.27535 * 25 24 23 44 44 H 1.08000 * 119.87415 * 179.72159 * 26 25 24 45 45 H 1.07993 * 119.93828 * 180.02562 * 27 26 25 46 46 H 1.08004 * 120.05436 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.91158 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.4999 -0.8267 -1.1905 6 6 4.3343 0.2337 -1.7613 7 6 4.0848 -1.9161 -0.6022 8 1 3.5077 -2.5498 0.0550 9 6 5.4210 -2.2028 -0.8459 10 7 6.0483 -1.6175 -1.8440 11 14 6.3289 -3.4192 0.2429 12 1 6.1900 -4.7864 -0.3197 13 1 7.7666 -3.0524 0.3032 14 1 5.7517 -3.3858 1.6108 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3572 17 8 1.8576 1.1611 2.4117 18 6 2.6393 -0.7153 3.5646 19 6 2.9684 -2.0712 3.5154 20 7 3.4131 -2.6971 4.5854 21 6 3.5566 -2.0849 5.7439 22 6 3.2458 -0.7331 5.8829 23 6 3.4106 -0.0538 7.1921 24 6 3.1027 1.2989 7.3215 25 6 3.2533 1.9244 8.5426 26 6 3.7193 1.2136 9.6339 27 6 4.0310 -0.1283 9.5098 28 6 3.8791 -0.7650 8.2947 29 6 2.7766 -0.0281 4.7742 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -0.1585 -2.1369 34 1 1.6053 -1.7199 -1.2950 35 1 4.6152 -0.0336 -2.7800 36 1 3.7755 1.1696 -1.7722 37 1 5.2330 0.3542 -1.1564 38 1 6.9820 -1.8175 -2.0141 39 1 2.2489 -1.6318 1.1527 40 1 2.8612 -2.6126 2.5870 41 1 3.9198 -2.6383 6.5972 42 1 2.7429 1.8559 6.4690 43 1 3.0107 2.9718 8.6452 44 1 3.8398 1.7082 10.5864 45 1 4.3940 -0.6786 10.3652 46 1 4.1224 -1.8130 8.1991 47 1 2.5264 1.0199 4.8484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716021822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:08 Heat of formation + Delta-G solvation = 32.950820 kcal Electronic energy + Delta-G solvation = -28858.581199 eV Core-core repulsion = 25006.242283 eV Total energy + Delta-G solvation = -3852.338917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.84637 -40.51287 -39.55888 -38.08577 -35.84243 -34.55180 -33.81018 -32.95150 -31.94064 -31.43113 -30.04405 -28.08680 -27.38905 -26.06017 -25.23863 -23.83270 -23.16347 -22.59665 -21.77072 -21.30260 -19.38416 -18.65252 -18.08536 -17.66076 -17.49528 -16.96140 -16.75395 -16.24001 -16.07555 -15.59134 -15.39765 -15.31896 -15.06709 -14.77161 -14.70514 -14.63169 -14.44175 -13.96345 -13.81142 -13.73961 -13.48596 -13.36546 -13.09873 -12.82984 -12.70510 -12.58940 -12.30372 -12.19340 -12.05442 -11.92997 -11.88418 -11.78894 -11.35571 -11.28023 -10.71671 -10.58678 -10.55067 -9.97074 -9.89269 -9.21172 -8.81308 -7.80639 -5.22668 -0.66028 -0.25712 0.46637 0.75365 1.44938 1.49339 1.54949 1.81431 2.19362 2.50667 2.65315 3.02152 3.14588 3.34498 3.42224 3.64005 3.67191 3.68061 3.73686 3.90811 4.05192 4.09641 4.20140 4.29983 4.38187 4.40272 4.49807 4.56546 4.57016 4.76570 4.84031 4.84499 4.87266 4.89321 4.98495 5.01383 5.12310 5.16496 5.32158 5.36078 5.45056 5.54410 5.57708 5.58480 5.58774 5.63245 5.73862 6.03734 6.30502 6.55662 6.70812 7.13188 7.20914 7.88294 8.32461 9.23766 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012119 B = 0.003253 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.912406 B = 8605.644236 C = 9955.736672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.123 3.877 3 H 0.055 0.945 4 C 0.141 3.859 5 N -0.615 5.615 6 C 0.180 3.820 7 C -0.240 4.240 8 H 0.084 0.916 9 C -0.056 4.056 10 N -0.940 5.940 11 Si 0.949 3.051 12 H -0.283 1.283 13 H -0.306 1.306 14 H -0.265 1.265 15 N -0.686 5.686 16 C 0.560 3.440 17 O -0.581 6.581 18 C -0.187 4.187 19 C 0.131 3.869 20 N -0.496 5.496 21 C 0.127 3.873 22 C -0.100 4.100 23 C -0.061 4.061 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.114 4.114 29 C -0.022 4.022 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.004 0.996 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.243 0.757 39 H 0.405 0.595 40 H 0.164 0.836 41 H 0.194 0.806 42 H 0.122 0.878 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.145 0.855 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 2.297 20.910 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 H 0.073 0.927 4 C 0.014 3.986 5 N -0.338 5.338 6 C 0.035 3.965 7 C -0.370 4.370 8 H 0.102 0.898 9 C -0.250 4.250 10 N -0.589 5.589 11 Si 0.778 3.222 12 H -0.210 1.210 13 H -0.233 1.233 14 H -0.190 1.190 15 N -0.336 5.336 16 C 0.346 3.654 17 O -0.463 6.463 18 C -0.192 4.192 19 C -0.027 4.027 20 N -0.204 5.204 21 C -0.031 4.031 22 C -0.102 4.102 23 C -0.062 4.062 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.138 4.138 28 C -0.131 4.131 29 C -0.048 4.048 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.023 0.977 36 H 0.039 0.961 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.243 0.757 40 H 0.181 0.819 41 H 0.211 0.789 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.170 0.830 46 H 0.163 0.837 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.863 2.196 20.750 22.670 hybrid contribution 0.945 0.093 -0.165 0.964 sum -7.917 2.289 20.585 22.173 Atomic orbital electron populations 1.22021 0.93348 1.02851 1.02395 1.21804 0.94504 0.96608 0.85515 0.92707 1.21267 0.83137 0.99595 0.94600 1.44116 1.00959 1.20628 1.68111 1.20503 0.92467 0.87435 0.96129 1.19437 0.94014 1.03701 1.19806 0.89799 1.25557 0.99305 1.01306 0.98841 1.70256 1.10394 1.47843 1.30360 0.85531 0.77634 0.79208 0.79800 1.21013 1.23297 1.18980 1.45901 1.64505 1.14413 1.08731 1.18193 0.77402 0.86098 0.83675 1.90687 1.53192 1.16624 1.85842 1.20954 1.06686 0.96197 0.95330 1.23158 0.91327 0.90661 0.97521 1.67723 1.13302 1.39604 0.99755 1.23616 0.92670 0.91191 0.95588 1.19884 1.01304 0.95124 0.93853 1.18641 1.01999 0.94051 0.91505 1.21442 1.00055 0.93951 0.98875 1.21390 0.99347 1.01143 0.92351 1.21643 0.97573 0.94728 0.99532 1.21466 0.99328 0.95230 0.97734 1.21498 0.98557 1.00940 0.92137 1.21873 0.91974 1.00767 0.90212 0.91129 0.93692 0.89842 0.91100 0.91542 0.97721 0.96112 0.96656 0.94709 0.75731 0.81869 0.78912 0.86038 0.84013 0.83340 0.83001 0.83723 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.48 71.98 0.68 -3.16 16 2 C 0.12 4.11 2.88 44.99 0.13 4.24 16 3 H 0.05 2.13 7.58 -2.39 -0.02 2.12 16 4 C 0.14 5.05 5.30 86.38 0.46 5.51 16 5 N -0.62 -28.85 2.82 -726.93 -2.05 -30.90 16 6 C 0.18 8.93 8.97 127.77 1.15 10.08 16 7 C -0.24 -12.00 8.81 84.03 0.74 -11.26 16 8 H 0.08 3.81 6.40 -2.91 -0.02 3.79 16 9 C -0.06 -3.03 5.09 84.86 0.43 -2.59 16 10 N -0.94 -55.19 10.45 21.65 0.23 -54.97 16 11 Si 0.95 44.36 29.58 68.60 2.03 46.39 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 N -0.69 -23.80 4.44 -445.39 -1.98 -25.78 16 16 C 0.56 20.59 7.75 86.79 0.67 21.26 16 17 O -0.58 -24.24 16.08 -3.89 -0.06 -24.31 16 18 C -0.19 -6.11 5.89 -20.02 -0.12 -6.22 16 19 C 0.13 4.11 10.71 85.05 0.91 5.02 16 20 N -0.50 -14.81 10.33 -193.92 -2.00 -16.81 16 21 C 0.13 3.07 10.59 84.98 0.90 3.97 16 22 C -0.10 -2.49 5.89 -19.98 -0.12 -2.61 16 23 C -0.06 -1.29 5.88 -20.04 -0.12 -1.41 16 24 C -0.13 -2.53 9.44 22.48 0.21 -2.32 16 25 C -0.12 -1.97 10.03 22.24 0.22 -1.75 16 26 C -0.12 -1.52 10.04 22.31 0.22 -1.29 16 27 C -0.12 -1.55 10.03 22.24 0.22 -1.33 16 28 C -0.11 -1.83 9.44 22.48 0.21 -1.61 16 29 C -0.02 -0.65 9.07 22.95 0.21 -0.44 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.26 8.14 -2.38 -0.02 1.25 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 34 H 0.07 2.23 8.04 -2.39 -0.02 2.21 16 35 H 0.00 0.24 7.51 -2.39 -0.02 0.22 16 36 H 0.02 0.89 8.04 -2.38 -0.02 0.88 16 37 H 0.01 0.82 6.95 -2.39 -0.02 0.81 16 38 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.40 13.51 4.64 -92.71 -0.43 13.08 16 40 H 0.16 4.89 6.41 -2.91 -0.02 4.87 16 41 H 0.19 3.17 6.21 -2.91 -0.02 3.15 16 42 H 0.12 2.48 6.27 -2.91 -0.02 2.47 16 43 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 45 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.15 1.67 6.23 -2.91 -0.02 1.65 16 47 H 0.15 4.21 5.99 -2.91 -0.02 4.19 16 Total: -1.00 -70.06 385.54 3.75 -66.31 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.57 Total: 25.98 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 7.02 Total: 14.09 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -5.81 Total: -128.46 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.06 3.75 -66.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716021822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.259 kcal (2) G-P(sol) polarization free energy of solvation -70.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds