Wall clock time and date at job start Tue Mar 31 2020 23:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47191 * 2 1 4 4 N 1.46497 * 109.47421 * 119.99899 * 2 1 3 5 5 C 1.36934 * 120.00320 * 274.99943 * 4 2 1 6 6 H 1.08005 * 119.99820 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00426 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99573 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46917 * 90.00322 * 9 7 5 11 11 H 1.48504 * 109.46931 * 210.00553 * 9 7 5 12 12 H 1.48502 * 109.47132 * 330.00416 * 9 7 5 13 13 C 1.53003 * 109.46933 * 240.00070 * 2 1 3 14 14 H 1.09003 * 110.91506 * 299.17992 * 13 2 1 15 15 C 1.55159 * 111.00239 * 175.27790 * 13 2 1 16 16 C 1.54320 * 102.94018 * 206.42272 * 15 13 2 17 17 N 1.47188 * 107.29632 * 22.28801 * 16 15 13 18 18 C 1.34775 * 125.73575 * 181.02725 * 17 16 15 19 19 O 1.21496 * 119.99738 * 179.86474 * 18 17 16 20 20 C 1.48279 * 120.00122 * 359.85721 * 18 17 16 21 21 C 1.40279 * 119.23469 * 179.72938 * 20 18 17 22 22 C 1.36508 * 119.80400 * 179.78690 * 21 20 18 23 23 C 1.40749 * 118.25020 * 0.45542 * 22 21 20 24 24 C 1.40411 * 121.27284 * 179.80842 * 23 22 21 25 25 C 1.36134 * 119.65149 * 179.97438 * 24 23 22 26 26 C 1.39436 * 120.91295 * 359.97438 * 25 24 23 27 27 C 1.35992 * 121.08305 * 0.06412 * 26 25 24 28 28 C 1.40828 * 119.74225 * 359.91244 * 27 26 25 29 29 N 1.31875 * 119.23629 * 0.02562 * 20 18 17 30 30 C 1.47428 * 108.61319 * 0.90782 * 17 16 15 31 31 H 1.08999 * 109.47207 * 54.77449 * 1 2 3 32 32 H 1.09001 * 109.47301 * 174.77651 * 1 2 3 33 33 H 1.09003 * 109.46903 * 294.77518 * 1 2 3 34 34 H 0.97005 * 119.99940 * 94.99830 * 4 2 1 35 35 H 0.97007 * 119.99491 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.72321 * 324.78697 * 15 13 2 37 37 H 1.08994 * 110.71843 * 88.06171 * 15 13 2 38 38 H 1.09009 * 109.88063 * 141.61196 * 16 15 13 39 39 H 1.08998 * 109.88753 * 262.62333 * 16 15 13 40 40 H 1.07995 * 120.09363 * 0.02562 * 21 20 18 41 41 H 1.08002 * 120.86845 * 180.24518 * 22 21 20 42 42 H 1.08007 * 120.17423 * 359.95987 * 24 23 22 43 43 H 1.08006 * 119.54387 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.45706 * 180.02562 * 26 25 24 45 45 H 1.08006 * 120.13013 * 179.97438 * 27 26 25 46 46 H 1.08996 * 110.36466 * 217.11944 * 30 17 16 47 47 H 1.09000 * 110.36681 * 94.90015 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6115 -0.6619 3.5092 8 7 2.9245 -1.9390 3.4500 9 14 2.7893 0.2698 5.1185 10 1 1.5214 0.1784 5.8860 11 1 3.8937 -0.3235 5.9145 12 1 3.0943 1.6951 4.8342 13 6 2.0400 -0.7213 -1.2493 14 1 1.7016 -1.7573 -1.2658 15 6 3.5864 -0.6396 -1.3463 16 6 3.8443 -0.7602 -2.8630 17 7 2.6067 -0.3581 -3.5507 18 6 2.4165 -0.3443 -4.8849 19 8 1.3469 0.0060 -5.3424 20 6 3.5127 -0.7564 -5.7944 21 6 3.2953 -0.7413 -7.1802 22 6 4.2978 -1.1142 -8.0284 23 6 5.5269 -1.5149 -7.4717 24 6 6.5995 -1.9148 -8.2848 25 6 7.7739 -2.2955 -7.7112 26 6 7.9281 -2.2937 -6.3254 27 6 6.9112 -1.9135 -5.5064 28 6 5.6804 -1.5122 -6.0607 29 7 4.6674 -1.1342 -5.2816 30 6 1.6078 0.0247 -2.5363 31 1 -0.3633 0.5927 -0.8395 32 1 -0.3634 -1.0234 -0.0936 33 1 -0.3633 0.4307 0.9331 34 1 2.2491 -1.6318 1.1526 35 1 3.2479 -2.3962 4.2421 36 1 3.9465 0.3175 -0.9688 37 1 4.0506 -1.4666 -0.8091 38 1 4.6601 -0.0984 -3.1540 39 1 4.0949 -1.7905 -3.1156 40 1 2.3389 -0.4319 -7.5750 41 1 4.1505 -1.1053 -9.0982 42 1 6.4932 -1.9206 -9.3596 43 1 8.5980 -2.6024 -8.3383 44 1 8.8703 -2.5999 -5.8954 45 1 7.0473 -1.9184 -4.4349 46 1 0.6125 -0.2957 -2.8443 47 1 1.6255 1.1024 -2.3743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716972440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:35 Heat of formation + Delta-G solvation = 40.177040 kcal Electronic energy + Delta-G solvation = -28513.915123 eV Core-core repulsion = 24661.889559 eV Total energy + Delta-G solvation = -3852.025564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33201 -39.83584 -37.94955 -37.04201 -35.21252 -33.92902 -32.41652 -31.16586 -30.57602 -30.12827 -29.15999 -27.43635 -25.70756 -24.36541 -23.87702 -22.84272 -22.44912 -21.32457 -20.10591 -19.58158 -18.31605 -17.87958 -17.36648 -17.00474 -16.15273 -15.90654 -15.41551 -15.07695 -14.84271 -14.55583 -14.48082 -14.10476 -13.75113 -13.62941 -13.47708 -13.35198 -13.09886 -12.67639 -12.52984 -12.44172 -12.09380 -12.01827 -11.96699 -11.83878 -11.61784 -11.17113 -10.96540 -10.87040 -10.65351 -10.54304 -10.49701 -10.21915 -10.18015 -9.81693 -9.62469 -9.59995 -9.17077 -8.89463 -8.66625 -8.52400 -6.94253 -5.75245 -3.03344 -0.13212 0.33122 1.58896 2.17177 2.87978 3.04402 3.44277 3.49849 3.50961 3.73900 3.80861 4.16945 4.32537 4.43175 4.48610 4.58480 4.71189 4.77053 4.91514 4.95762 5.01821 5.08785 5.22300 5.38367 5.53160 5.55339 5.56336 5.60101 5.67955 5.68786 5.83767 5.91916 5.95180 6.01780 6.03607 6.07954 6.10939 6.16348 6.27953 6.31012 6.43234 6.47012 6.51521 6.65408 6.69330 6.90632 7.13508 7.36084 7.52926 7.71885 8.07445 8.43430 9.54827 10.12435 10.47520 11.47449 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.002429 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.246315 B =11523.485591 C =13020.711470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.234 4.234 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.121 4.121 16 C 0.115 3.885 17 N -0.592 5.592 18 C 0.577 3.423 19 O -0.539 6.539 20 C 0.123 3.877 21 C -0.124 4.124 22 C -0.064 4.064 23 C -0.089 4.089 24 C -0.103 4.103 25 C -0.108 4.108 26 C -0.106 4.106 27 C -0.082 4.082 28 C 0.121 3.879 29 N -0.433 5.433 30 C 0.112 3.888 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.078 0.922 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.663 -0.494 -26.038 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.159 4.159 16 C -0.007 4.007 17 N -0.324 5.324 18 C 0.364 3.636 19 O -0.416 6.416 20 C -0.031 4.031 21 C -0.144 4.144 22 C -0.090 4.090 23 C -0.091 4.091 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.101 4.101 28 C -0.002 4.002 29 N -0.145 5.145 30 C -0.010 4.010 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.159 0.841 46 H 0.097 0.903 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.298 -0.203 -25.275 26.603 hybrid contribution 0.106 0.070 0.063 0.142 sum 8.404 -0.133 -25.213 26.577 Atomic orbital electron populations 1.22500 0.99280 1.00624 1.00432 1.20129 0.91748 0.95159 0.85448 0.93278 1.42362 1.78138 1.10667 1.05101 1.19216 1.36224 0.93840 0.87275 0.91248 1.24712 1.02342 0.95964 0.97960 1.69661 1.51093 1.08644 1.28782 0.86227 0.77256 0.78810 0.84124 1.21831 1.21859 1.20819 1.22671 0.95453 1.00216 0.93852 0.90093 1.22685 0.96125 1.03922 0.93176 1.22265 0.85708 1.00839 0.91907 1.48440 1.16221 1.63241 1.04451 1.17524 0.86326 0.78848 0.80947 1.90777 1.25868 1.49315 1.75660 1.21325 0.92079 0.97308 0.92407 1.21740 1.01120 0.98973 0.92608 1.21452 0.91432 0.95546 1.00602 1.18998 0.95404 1.00390 0.94290 1.20996 0.92497 0.99034 0.99638 1.21018 0.97678 0.98686 0.95187 1.20962 0.99235 0.98877 0.93486 1.20946 0.90568 0.97452 1.01087 1.18944 0.93677 0.98507 0.89103 1.68177 0.99270 1.08405 1.38628 1.22395 0.92187 0.99640 0.86774 0.94372 0.93582 0.92574 0.78292 0.93594 0.90437 0.89539 0.91028 0.90816 0.83184 0.83700 0.85088 0.85364 0.84983 0.84148 0.90327 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.22 37.16 0.34 -2.67 16 2 C 0.19 3.53 2.40 -67.93 -0.16 3.37 16 3 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 4 N -0.72 -17.31 4.90 -53.43 -0.26 -17.58 16 5 C -0.23 -6.32 9.93 -15.06 -0.15 -6.47 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 9 Si 0.90 22.18 29.55 -169.99 -5.02 17.16 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C -0.10 -1.64 2.64 -88.47 -0.23 -1.88 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.12 -1.85 6.21 -24.90 -0.15 -2.01 16 16 C 0.12 1.58 5.40 -2.98 -0.02 1.57 16 17 N -0.59 -8.82 3.33 -171.34 -0.57 -9.39 16 18 C 0.58 8.85 7.84 -12.13 -0.10 8.76 16 19 O -0.54 -9.40 16.54 5.37 0.09 -9.31 16 20 C 0.12 1.61 6.73 -82.95 -0.56 1.06 16 21 C -0.12 -1.32 9.54 -39.44 -0.38 -1.70 16 22 C -0.06 -0.54 9.88 -39.26 -0.39 -0.93 16 23 C -0.09 -0.83 5.75 -106.72 -0.61 -1.44 16 24 C -0.10 -0.70 9.77 -39.52 -0.39 -1.09 16 25 C -0.11 -0.66 9.96 -39.89 -0.40 -1.06 16 26 C -0.11 -0.73 9.94 -39.94 -0.40 -1.12 16 27 C -0.08 -0.74 9.99 -39.41 -0.39 -1.14 16 28 C 0.12 1.34 6.61 -84.85 -0.56 0.78 16 29 N -0.43 -5.49 6.77 -7.54 -0.05 -5.54 16 30 C 0.11 1.68 5.47 -2.53 -0.01 1.67 16 31 H 0.04 0.58 7.58 -51.93 -0.39 0.19 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.38 9.82 7.80 -40.82 -0.32 9.51 16 35 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.07 0.95 7.53 -51.92 -0.39 0.56 16 39 H 0.07 1.00 7.42 -51.93 -0.39 0.62 16 40 H 0.15 1.47 7.60 -52.49 -0.40 1.07 16 41 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 43 H 0.13 0.46 8.06 -52.48 -0.42 0.03 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 47 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -32.19 387.33 -10.81 -43.00 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.91 Total: 7.56 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -4.65 Total: -4.79 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.16 Total: -59.46 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.19 -10.81 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716972440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.181 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds