Wall clock time and date at job start Tue Mar 31 2020 23:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47191 * 2 1 4 4 N 1.46497 * 109.47421 * 119.99899 * 2 1 3 5 5 C 1.36934 * 120.00320 * 274.99943 * 4 2 1 6 6 H 1.08005 * 119.99820 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00426 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99573 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46917 * 90.00322 * 9 7 5 11 11 H 1.48504 * 109.46931 * 210.00553 * 9 7 5 12 12 H 1.48502 * 109.47132 * 330.00416 * 9 7 5 13 13 C 1.53003 * 109.46933 * 240.00070 * 2 1 3 14 14 H 1.09003 * 110.91506 * 299.17992 * 13 2 1 15 15 C 1.55159 * 111.00239 * 175.27790 * 13 2 1 16 16 C 1.54320 * 102.94018 * 206.42272 * 15 13 2 17 17 N 1.47188 * 107.29632 * 22.28801 * 16 15 13 18 18 C 1.34775 * 125.73575 * 181.02725 * 17 16 15 19 19 O 1.21496 * 119.99738 * 179.86474 * 18 17 16 20 20 C 1.48279 * 120.00122 * 359.85721 * 18 17 16 21 21 C 1.40279 * 119.23469 * 179.72938 * 20 18 17 22 22 C 1.36508 * 119.80400 * 179.78690 * 21 20 18 23 23 C 1.40749 * 118.25020 * 0.45542 * 22 21 20 24 24 C 1.40411 * 121.27284 * 179.80842 * 23 22 21 25 25 C 1.36134 * 119.65149 * 179.97438 * 24 23 22 26 26 C 1.39436 * 120.91295 * 359.97438 * 25 24 23 27 27 C 1.35992 * 121.08305 * 0.06412 * 26 25 24 28 28 C 1.40828 * 119.74225 * 359.91244 * 27 26 25 29 29 N 1.31875 * 119.23629 * 0.02562 * 20 18 17 30 30 C 1.47428 * 108.61319 * 0.90782 * 17 16 15 31 31 H 1.08999 * 109.47207 * 54.77449 * 1 2 3 32 32 H 1.09001 * 109.47301 * 174.77651 * 1 2 3 33 33 H 1.09003 * 109.46903 * 294.77518 * 1 2 3 34 34 H 0.97005 * 119.99940 * 94.99830 * 4 2 1 35 35 H 0.97007 * 119.99491 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.72321 * 324.78697 * 15 13 2 37 37 H 1.08994 * 110.71843 * 88.06171 * 15 13 2 38 38 H 1.09009 * 109.88063 * 141.61196 * 16 15 13 39 39 H 1.08998 * 109.88753 * 262.62333 * 16 15 13 40 40 H 1.07995 * 120.09363 * 0.02562 * 21 20 18 41 41 H 1.08002 * 120.86845 * 180.24518 * 22 21 20 42 42 H 1.08007 * 120.17423 * 359.95987 * 24 23 22 43 43 H 1.08006 * 119.54387 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.45706 * 180.02562 * 26 25 24 45 45 H 1.08006 * 120.13013 * 179.97438 * 27 26 25 46 46 H 1.08996 * 110.36466 * 217.11944 * 30 17 16 47 47 H 1.09000 * 110.36681 * 94.90015 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6115 -0.6619 3.5092 8 7 2.9245 -1.9390 3.4500 9 14 2.7893 0.2698 5.1185 10 1 1.5214 0.1784 5.8860 11 1 3.8937 -0.3235 5.9145 12 1 3.0943 1.6951 4.8342 13 6 2.0400 -0.7213 -1.2493 14 1 1.7016 -1.7573 -1.2658 15 6 3.5864 -0.6396 -1.3463 16 6 3.8443 -0.7602 -2.8630 17 7 2.6067 -0.3581 -3.5507 18 6 2.4165 -0.3443 -4.8849 19 8 1.3469 0.0060 -5.3424 20 6 3.5127 -0.7564 -5.7944 21 6 3.2953 -0.7413 -7.1802 22 6 4.2978 -1.1142 -8.0284 23 6 5.5269 -1.5149 -7.4717 24 6 6.5995 -1.9148 -8.2848 25 6 7.7739 -2.2955 -7.7112 26 6 7.9281 -2.2937 -6.3254 27 6 6.9112 -1.9135 -5.5064 28 6 5.6804 -1.5122 -6.0607 29 7 4.6674 -1.1342 -5.2816 30 6 1.6078 0.0247 -2.5363 31 1 -0.3633 0.5927 -0.8395 32 1 -0.3634 -1.0234 -0.0936 33 1 -0.3633 0.4307 0.9331 34 1 2.2491 -1.6318 1.1526 35 1 3.2479 -2.3962 4.2421 36 1 3.9465 0.3175 -0.9688 37 1 4.0506 -1.4666 -0.8091 38 1 4.6601 -0.0984 -3.1540 39 1 4.0949 -1.7905 -3.1156 40 1 2.3389 -0.4319 -7.5750 41 1 4.1505 -1.1053 -9.0982 42 1 6.4932 -1.9206 -9.3596 43 1 8.5980 -2.6024 -8.3383 44 1 8.8703 -2.5999 -5.8954 45 1 7.0473 -1.9184 -4.4349 46 1 0.6125 -0.2957 -2.8443 47 1 1.6255 1.1024 -2.3743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716972440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:34 Heat of formation + Delta-G solvation = 22.029158 kcal Electronic energy + Delta-G solvation = -28514.702074 eV Core-core repulsion = 24661.889559 eV Total energy + Delta-G solvation = -3852.812515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.12720 -40.92719 -39.18429 -37.82593 -36.82582 -34.70667 -34.16122 -32.25209 -31.51915 -30.95967 -30.77398 -28.84650 -26.76434 -25.89906 -24.79460 -24.05133 -23.13790 -22.70137 -21.21068 -21.01249 -19.19933 -19.01027 -18.72890 -18.06284 -17.45668 -16.93429 -16.62823 -16.20965 -15.80222 -15.53285 -15.49794 -15.18743 -15.14989 -14.85233 -14.68349 -14.32233 -14.12087 -14.00677 -13.87593 -13.83518 -13.44799 -13.20150 -12.90198 -12.78171 -12.70360 -12.57719 -12.44548 -12.30484 -12.16745 -11.97546 -11.71695 -11.62235 -11.54932 -11.50084 -11.32492 -10.90450 -10.49489 -9.93759 -9.67480 -9.27326 -8.96370 -7.89580 -5.16606 -0.85347 -0.35005 0.92423 1.34306 1.49423 1.50170 1.58272 1.76846 2.17794 2.59073 2.85164 3.07693 3.39909 3.45255 3.58758 3.63728 3.69604 3.82708 3.84300 3.87863 4.13752 4.22806 4.25197 4.33201 4.37456 4.38612 4.50789 4.52742 4.62647 4.66696 4.78021 4.82169 4.89233 4.94362 4.98080 5.01175 5.08608 5.09497 5.15514 5.20702 5.32674 5.38561 5.38965 5.44857 5.50303 5.56298 5.61823 5.86608 6.31146 6.33618 6.55790 6.94123 7.39351 8.15162 8.39103 9.33892 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.002429 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.246315 B =11523.485591 C =13020.711470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.731 5.731 5 C -0.230 4.230 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.966 3.034 10 H -0.291 1.291 11 H -0.297 1.297 12 H -0.270 1.270 13 C -0.092 4.092 14 H 0.075 0.925 15 C -0.115 4.115 16 C 0.132 3.868 17 N -0.597 5.597 18 C 0.574 3.426 19 O -0.567 6.567 20 C 0.096 3.904 21 C -0.141 4.141 22 C -0.047 4.047 23 C -0.101 4.101 24 C -0.101 4.101 25 C -0.104 4.104 26 C -0.095 4.095 27 C -0.109 4.109 28 C 0.095 3.905 29 N -0.451 5.451 30 C 0.118 3.882 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.152 0.848 41 H 0.185 0.815 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.137 0.863 46 H 0.078 0.922 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.271 -0.216 -28.769 30.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.075 3.925 3 H 0.066 0.934 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.796 3.204 10 H -0.219 1.219 11 H -0.224 1.224 12 H -0.195 1.195 13 C -0.112 4.112 14 H 0.094 0.906 15 C -0.154 4.154 16 C 0.010 3.990 17 N -0.328 5.328 18 C 0.362 3.638 19 O -0.446 6.446 20 C -0.057 4.057 21 C -0.161 4.161 22 C -0.073 4.073 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.128 4.128 28 C -0.028 4.028 29 N -0.163 5.163 30 C -0.004 4.004 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.170 0.830 41 H 0.202 0.798 42 H 0.182 0.818 43 H 0.180 0.820 44 H 0.175 0.825 45 H 0.154 0.846 46 H 0.097 0.903 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.891 0.111 -28.032 29.726 hybrid contribution -0.262 -0.048 0.762 0.808 sum 9.629 0.063 -27.269 28.920 Atomic orbital electron populations 1.22364 0.97952 1.00916 1.00730 1.20289 0.92505 0.94866 0.84860 0.93382 1.42514 1.78338 1.10270 1.05922 1.19561 1.34331 0.94076 0.88225 0.90821 1.25448 1.03345 0.96831 1.01108 1.69811 1.52909 1.10093 1.29184 0.85241 0.76689 0.78130 0.80328 1.21875 1.22420 1.19546 1.22461 0.95912 0.99645 0.93180 0.90627 1.22593 0.95453 1.03082 0.94226 1.22097 0.85485 1.01016 0.90406 1.48490 1.16301 1.63363 1.04616 1.17950 0.86689 0.78092 0.81031 1.90738 1.27135 1.50663 1.76107 1.21114 0.91924 0.99633 0.92996 1.21801 1.02125 1.00365 0.91839 1.21869 0.90167 0.93098 1.02134 1.19319 0.96654 1.00431 0.93857 1.21395 0.91674 0.97809 1.01079 1.21473 0.98446 0.97135 0.95078 1.21348 0.99335 0.96719 0.94027 1.21075 0.90897 0.99289 1.01499 1.19322 0.93820 0.99346 0.90328 1.68030 0.99588 1.09025 1.39693 1.22280 0.92298 0.99704 0.86124 0.91406 0.93823 0.94337 0.79529 0.94233 0.91034 0.90625 0.90505 0.90741 0.83004 0.79788 0.81812 0.81973 0.82531 0.84559 0.90321 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.65 9.22 71.98 0.66 -4.99 16 2 C 0.18 7.01 2.40 44.99 0.11 7.12 16 3 H 0.05 1.86 8.07 -2.39 -0.02 1.84 16 4 N -0.73 -35.64 4.90 -322.94 -1.58 -37.23 16 5 C -0.23 -12.49 9.93 84.03 0.83 -11.66 16 6 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 7 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 8 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 9 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 C -0.09 -3.00 2.64 -9.40 -0.02 -3.03 16 14 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 15 C -0.12 -3.62 6.21 31.78 0.20 -3.42 16 16 C 0.13 3.72 5.40 86.70 0.47 4.18 16 17 N -0.60 -18.09 3.33 -814.28 -2.71 -20.81 16 18 C 0.57 18.10 7.84 86.92 0.68 18.78 16 19 O -0.57 -20.26 16.54 -3.70 -0.06 -20.32 16 20 C 0.10 2.58 6.73 42.31 0.28 2.86 16 21 C -0.14 -2.95 9.54 22.36 0.21 -2.74 16 22 C -0.05 -0.69 9.88 22.48 0.22 -0.47 16 23 C -0.10 -1.66 5.75 -21.22 -0.12 -1.78 16 24 C -0.10 -0.98 9.77 22.31 0.22 -0.76 16 25 C -0.10 -0.84 9.96 22.07 0.22 -0.62 16 26 C -0.09 -1.04 9.94 22.04 0.22 -0.82 16 27 C -0.11 -1.89 9.99 22.38 0.22 -1.67 16 28 C 0.10 2.06 6.61 40.47 0.27 2.32 16 29 N -0.45 -11.67 6.77 -177.76 -1.20 -12.87 16 30 C 0.12 3.54 5.47 86.85 0.48 4.02 16 31 H 0.07 1.98 7.58 -2.39 -0.02 1.97 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.37 19.65 7.80 -92.70 -0.72 18.93 16 35 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 36 H 0.07 2.32 8.03 -2.39 -0.02 2.31 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.08 2.10 7.53 -2.38 -0.02 2.08 16 39 H 0.07 2.10 7.42 -2.39 -0.02 2.08 16 40 H 0.15 2.99 7.60 -2.91 -0.02 2.97 16 41 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 43 H 0.16 0.26 8.06 -2.91 -0.02 0.23 16 44 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 45 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 46 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 47 H 0.08 2.25 8.03 -2.39 -0.02 2.23 16 Total: -1.00 -71.29 387.33 2.62 -68.67 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.26 Total: 29.36 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 5.62 Total: 3.53 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -5.22 Total: -129.32 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.06 Total: -20.32 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -71.29 2.62 -68.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716972440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.698 kcal (2) G-P(sol) polarization free energy of solvation -71.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds