Wall clock time and date at job start Tue Mar 31 2020 23:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47303 * 2 1 4 4 C 1.53008 * 109.46894 * 240.00521 * 2 1 3 5 5 N 1.46502 * 109.46894 * 185.00391 * 4 2 1 6 6 C 1.46499 * 119.99624 * 269.99694 * 5 4 2 7 7 C 1.34773 * 120.00512 * 89.99811 * 5 4 2 8 8 O 1.21577 * 119.99786 * 4.59497 * 7 5 4 9 9 C 1.47704 * 120.00407 * 184.59864 * 7 5 4 10 10 C 1.40194 * 120.46185 * 148.20815 * 9 7 5 11 11 C 1.38043 * 118.38583 * 180.02562 * 10 9 7 12 12 C 1.39510 * 119.21332 * 0.02562 * 11 10 9 13 13 C 1.48229 * 119.57154 * 179.97438 * 12 11 10 14 14 C 1.39421 * 120.12794 * 179.97438 * 13 12 11 15 15 C 1.37996 * 119.86524 * 179.97438 * 14 13 12 16 16 C 1.38338 * 120.13388 * 0.02562 * 15 14 13 17 17 C 1.38338 * 120.25634 * 359.97438 * 16 15 14 18 18 C 1.37990 * 120.13368 * 0.02562 * 17 16 15 19 19 N 1.32774 * 120.85799 * 0.25811 * 12 11 10 20 20 C 1.31520 * 121.76852 * 359.46376 * 19 12 11 21 21 N 1.46500 * 109.47242 * 120.00633 * 2 1 3 22 22 C 1.36939 * 119.99711 * 275.00152 * 21 2 1 23 23 H 1.07994 * 120.00132 * 359.97438 * 22 21 2 24 24 C 1.38807 * 119.99940 * 179.97438 * 22 21 2 25 25 N 1.31625 * 120.00165 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00189 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47368 * 89.99802 * 26 24 22 28 28 H 1.48506 * 109.47301 * 209.99919 * 26 24 22 29 29 H 1.48504 * 109.47109 * 329.99750 * 26 24 22 30 30 H 1.09006 * 109.47205 * 59.99738 * 1 2 3 31 31 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46898 * 299.99730 * 1 2 3 33 33 H 1.08997 * 109.46971 * 64.99983 * 4 2 1 34 34 H 1.08998 * 109.46743 * 304.99802 * 4 2 1 35 35 H 1.09001 * 109.47171 * 274.25094 * 6 5 4 36 36 H 1.09006 * 109.47531 * 34.25430 * 6 5 4 37 37 H 1.09006 * 109.47457 * 154.25393 * 6 5 4 38 38 H 1.08000 * 120.80235 * 0.02562 * 10 9 7 39 39 H 1.07994 * 120.39686 * 180.02562 * 11 10 9 40 40 H 1.07997 * 120.07151 * 0.02562 * 14 13 12 41 41 H 1.08004 * 119.93351 * 179.72859 * 15 14 13 42 42 H 1.07995 * 119.87200 * 179.97438 * 16 15 14 43 43 H 1.08003 * 119.93115 * 180.02562 * 17 16 15 44 44 H 1.08000 * 120.06701 * 180.02562 * 18 17 16 45 45 H 1.08001 * 119.65393 * 180.29705 * 20 19 12 46 46 H 0.96995 * 119.99809 * 94.99399 * 21 2 1 47 47 H 0.96994 * 120.00095 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2341 -1.7613 7 6 4.0757 -1.8987 -0.6118 8 8 3.3865 -2.8175 -0.2132 9 6 5.5439 -1.9576 -0.4615 10 6 6.1206 -2.6241 0.6288 11 6 7.4972 -2.6523 0.7273 12 6 8.2631 -2.0212 -0.2532 13 6 9.7419 -2.0461 -0.1550 14 6 10.5186 -1.4196 -1.1287 15 6 11.8948 -1.4457 -1.0316 16 6 12.5041 -2.0921 0.0289 17 6 11.7386 -2.7154 0.9980 18 6 10.3615 -2.6960 0.9116 19 7 7.6844 -1.3938 -1.2703 20 6 6.3767 -1.3490 -1.4026 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0077 2.3757 23 1 1.8926 1.0402 2.4242 24 6 2.6113 -0.6622 3.5092 25 7 2.9234 -1.9396 3.4502 26 14 2.7903 0.2696 5.1182 27 1 1.5226 0.1795 5.8862 28 1 3.8945 -0.3243 5.9140 29 1 3.0964 1.6947 4.8335 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -0.1582 -2.1370 34 1 1.6053 -1.7197 -1.2953 35 1 4.4798 0.0488 -2.8256 36 1 3.8423 1.1970 -1.6240 37 1 5.3016 0.2454 -1.2590 38 1 5.5027 -3.1037 1.3735 39 1 7.9757 -3.1568 1.5536 40 1 10.0441 -0.9143 -1.9569 41 1 12.4977 -0.9645 -1.7877 42 1 13.5815 -2.1102 0.1005 43 1 12.2198 -3.2182 1.8240 44 1 9.7650 -3.1826 1.6690 45 1 5.9423 -0.8331 -2.2462 46 1 2.2489 -1.6319 1.1524 47 1 3.2468 -2.3968 4.2422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717748048.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:38 Heat of formation + Delta-G solvation = 62.930009 kcal Electronic energy + Delta-G solvation = -29057.607865 eV Core-core repulsion = 25206.568943 eV Total energy + Delta-G solvation = -3851.038921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.70829 -39.42320 -38.39925 -36.00473 -34.61964 -32.95241 -32.45631 -31.89324 -31.00043 -29.70213 -28.56728 -27.17249 -25.98852 -24.14982 -23.89216 -23.49812 -22.02128 -21.54362 -20.18123 -19.28515 -17.66832 -17.47506 -16.95702 -16.47778 -16.15858 -15.52149 -15.12275 -14.86372 -14.65179 -14.54148 -14.19195 -14.04395 -13.73951 -13.53334 -13.45029 -13.08259 -12.95609 -12.79307 -12.53527 -12.38191 -12.18552 -12.00856 -11.70866 -11.42934 -11.34025 -11.23296 -11.17415 -10.82051 -10.66314 -10.38232 -10.04180 -9.89180 -9.75314 -9.61938 -9.54899 -9.18192 -9.10575 -8.85002 -8.26587 -8.14671 -6.84161 -5.65168 -2.94224 0.35592 1.25538 1.34025 1.60054 3.13573 3.35097 3.45248 3.50556 3.51549 3.70186 4.01982 4.12419 4.54205 4.64100 4.76277 4.79017 4.82147 4.92327 5.03601 5.09353 5.23711 5.27914 5.40697 5.43493 5.45240 5.48925 5.59744 5.61854 5.73932 5.78159 5.84049 5.88632 6.01782 6.03843 6.13866 6.26595 6.28357 6.32913 6.33169 6.38178 6.47161 6.64052 6.68361 6.79575 6.81127 6.92344 7.13939 7.74484 7.77017 7.88384 8.51468 8.66681 9.64286 10.26019 10.64037 11.55432 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.003291 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.913738 B = 8505.977486 C =10081.350288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.044 0.956 4 C 0.110 3.890 5 N -0.601 5.601 6 C 0.064 3.936 7 C 0.572 3.428 8 O -0.512 6.512 9 C -0.169 4.169 10 C -0.003 4.003 11 C -0.168 4.168 12 C 0.173 3.827 13 C -0.046 4.046 14 C -0.080 4.080 15 C -0.128 4.128 16 C -0.113 4.113 17 C -0.125 4.125 18 C -0.100 4.100 19 N -0.486 5.486 20 C 0.115 3.885 21 N -0.721 5.721 22 C -0.236 4.236 23 H 0.065 0.935 24 C -0.012 4.012 25 N -0.922 5.922 26 Si 0.898 3.102 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.284 1.284 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.175 0.825 46 H 0.396 0.604 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.757 1.059 -12.545 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.013 4.013 5 N -0.334 5.334 6 C -0.079 4.079 7 C 0.359 3.641 8 O -0.387 6.387 9 C -0.174 4.174 10 C -0.028 4.028 11 C -0.188 4.188 12 C 0.037 3.963 13 C -0.047 4.047 14 C -0.098 4.098 15 C -0.146 4.146 16 C -0.131 4.131 17 C -0.143 4.143 18 C -0.118 4.118 19 N -0.194 5.194 20 C -0.043 4.043 21 N -0.366 5.366 22 C -0.368 4.368 23 H 0.083 0.917 24 C -0.208 4.208 25 N -0.570 5.570 26 Si 0.730 3.270 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.210 1.210 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.174 0.826 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.192 0.808 46 H 0.234 0.766 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.911 1.070 -12.821 19.694 hybrid contribution -0.477 0.044 1.786 1.850 sum 14.434 1.114 -11.035 18.203 Atomic orbital electron populations 1.22401 0.98972 1.01043 0.99985 1.20654 0.92096 0.95595 0.87473 0.93813 1.21884 0.78662 1.02385 0.98385 1.47405 1.06912 1.20545 1.58517 1.22327 0.96709 0.91607 0.97287 1.17803 0.86576 0.82370 0.77338 1.90797 1.63717 1.37000 1.47152 1.21058 0.95146 1.02625 0.98571 1.21816 0.94348 0.91502 0.95182 1.22035 0.94088 1.02234 1.00455 1.19859 0.92799 0.93036 0.90558 1.18556 0.90028 0.99910 0.96173 1.21357 0.93237 0.97028 0.98210 1.21151 0.94652 1.00210 0.98621 1.21270 0.99904 0.97402 0.94548 1.21063 0.93515 1.00312 0.99362 1.21322 0.94954 0.98317 0.97253 1.67605 1.12088 1.17583 1.22155 1.23588 0.88368 0.94208 0.98186 1.42657 1.77671 1.11571 1.04725 1.19195 1.36355 0.93628 0.87615 0.91716 1.24702 1.02552 0.95913 0.97652 1.69730 1.50733 1.08317 1.28262 0.86324 0.77259 0.78793 0.84619 1.21871 1.21916 1.21014 0.94552 0.93316 0.92621 0.90825 0.89946 0.92499 0.91023 0.89960 0.82637 0.84153 0.84661 0.85819 0.86050 0.85699 0.85325 0.80838 0.76604 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.49 37.16 0.35 -2.61 16 2 C 0.15 3.07 3.20 -67.93 -0.22 2.85 16 3 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 4 C 0.11 1.84 5.17 -4.04 -0.02 1.82 16 5 N -0.60 -10.06 2.77 -182.74 -0.51 -10.57 16 6 C 0.06 0.79 8.81 59.85 0.53 1.31 16 7 C 0.57 11.25 6.62 -12.40 -0.08 11.17 16 8 O -0.51 -12.08 14.39 5.30 0.08 -12.01 16 9 C -0.17 -2.95 5.49 -104.78 -0.58 -3.52 16 10 C 0.00 -0.05 9.73 -38.92 -0.38 -0.42 16 11 C -0.17 -2.49 9.44 -39.18 -0.37 -2.86 16 12 C 0.17 2.50 6.73 -82.88 -0.56 1.94 16 13 C -0.05 -0.58 5.88 -104.91 -0.62 -1.19 16 14 C -0.08 -0.90 9.57 -39.23 -0.38 -1.28 16 15 C -0.13 -1.19 10.03 -39.63 -0.40 -1.59 16 16 C -0.11 -0.98 10.04 -39.51 -0.40 -1.37 16 17 C -0.12 -1.14 10.03 -39.64 -0.40 -1.54 16 18 C -0.10 -1.08 9.42 -39.23 -0.37 -1.45 16 19 N -0.49 -7.10 9.40 -9.45 -0.09 -7.19 16 20 C 0.12 1.66 8.62 -17.17 -0.15 1.52 16 21 N -0.72 -18.57 4.52 -53.42 -0.24 -18.81 16 22 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 23 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.92 -28.18 13.06 55.49 0.72 -27.45 16 26 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.08 1.50 7.36 -51.93 -0.38 1.12 16 35 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.08 1.06 4.71 -51.93 -0.24 0.82 16 38 H 0.16 3.07 8.01 -52.49 -0.42 2.65 16 39 H 0.14 1.70 6.17 -52.49 -0.32 1.38 16 40 H 0.14 1.49 7.53 -52.49 -0.40 1.10 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.13 1.22 6.17 -52.49 -0.32 0.90 16 45 H 0.18 2.00 4.77 -52.49 -0.25 1.75 16 46 H 0.40 11.14 5.22 -40.82 -0.21 10.92 16 47 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -34.74 385.09 -9.81 -44.55 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.28 Total: 12.43 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -4.27 Total: -4.49 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.11 Total: -64.02 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.74 -9.81 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717748048.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.477 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds