Wall clock time and date at job start Tue Mar 31 2020 23:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47303 * 2 1 4 4 C 1.53008 * 109.46894 * 240.00521 * 2 1 3 5 5 N 1.46502 * 109.46894 * 185.00391 * 4 2 1 6 6 C 1.46499 * 119.99624 * 269.99694 * 5 4 2 7 7 C 1.34773 * 120.00512 * 89.99811 * 5 4 2 8 8 O 1.21577 * 119.99786 * 4.59497 * 7 5 4 9 9 C 1.47704 * 120.00407 * 184.59864 * 7 5 4 10 10 C 1.40194 * 120.46185 * 148.20815 * 9 7 5 11 11 C 1.38043 * 118.38583 * 180.02562 * 10 9 7 12 12 C 1.39510 * 119.21332 * 0.02562 * 11 10 9 13 13 C 1.48229 * 119.57154 * 179.97438 * 12 11 10 14 14 C 1.39421 * 120.12794 * 179.97438 * 13 12 11 15 15 C 1.37996 * 119.86524 * 179.97438 * 14 13 12 16 16 C 1.38338 * 120.13388 * 0.02562 * 15 14 13 17 17 C 1.38338 * 120.25634 * 359.97438 * 16 15 14 18 18 C 1.37990 * 120.13368 * 0.02562 * 17 16 15 19 19 N 1.32774 * 120.85799 * 0.25811 * 12 11 10 20 20 C 1.31520 * 121.76852 * 359.46376 * 19 12 11 21 21 N 1.46500 * 109.47242 * 120.00633 * 2 1 3 22 22 C 1.36939 * 119.99711 * 275.00152 * 21 2 1 23 23 H 1.07994 * 120.00132 * 359.97438 * 22 21 2 24 24 C 1.38807 * 119.99940 * 179.97438 * 22 21 2 25 25 N 1.31625 * 120.00165 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00189 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47368 * 89.99802 * 26 24 22 28 28 H 1.48506 * 109.47301 * 209.99919 * 26 24 22 29 29 H 1.48504 * 109.47109 * 329.99750 * 26 24 22 30 30 H 1.09006 * 109.47205 * 59.99738 * 1 2 3 31 31 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46898 * 299.99730 * 1 2 3 33 33 H 1.08997 * 109.46971 * 64.99983 * 4 2 1 34 34 H 1.08998 * 109.46743 * 304.99802 * 4 2 1 35 35 H 1.09001 * 109.47171 * 274.25094 * 6 5 4 36 36 H 1.09006 * 109.47531 * 34.25430 * 6 5 4 37 37 H 1.09006 * 109.47457 * 154.25393 * 6 5 4 38 38 H 1.08000 * 120.80235 * 0.02562 * 10 9 7 39 39 H 1.07994 * 120.39686 * 180.02562 * 11 10 9 40 40 H 1.07997 * 120.07151 * 0.02562 * 14 13 12 41 41 H 1.08004 * 119.93351 * 179.72859 * 15 14 13 42 42 H 1.07995 * 119.87200 * 179.97438 * 16 15 14 43 43 H 1.08003 * 119.93115 * 180.02562 * 17 16 15 44 44 H 1.08000 * 120.06701 * 180.02562 * 18 17 16 45 45 H 1.08001 * 119.65393 * 180.29705 * 20 19 12 46 46 H 0.96995 * 119.99809 * 94.99399 * 21 2 1 47 47 H 0.96994 * 120.00095 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2341 -1.7613 7 6 4.0757 -1.8987 -0.6118 8 8 3.3865 -2.8175 -0.2132 9 6 5.5439 -1.9576 -0.4615 10 6 6.1206 -2.6241 0.6288 11 6 7.4972 -2.6523 0.7273 12 6 8.2631 -2.0212 -0.2532 13 6 9.7419 -2.0461 -0.1550 14 6 10.5186 -1.4196 -1.1287 15 6 11.8948 -1.4457 -1.0316 16 6 12.5041 -2.0921 0.0289 17 6 11.7386 -2.7154 0.9980 18 6 10.3615 -2.6960 0.9116 19 7 7.6844 -1.3938 -1.2703 20 6 6.3767 -1.3490 -1.4026 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0077 2.3757 23 1 1.8926 1.0402 2.4242 24 6 2.6113 -0.6622 3.5092 25 7 2.9234 -1.9396 3.4502 26 14 2.7903 0.2696 5.1182 27 1 1.5226 0.1795 5.8862 28 1 3.8945 -0.3243 5.9140 29 1 3.0964 1.6947 4.8335 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -0.1582 -2.1370 34 1 1.6053 -1.7197 -1.2953 35 1 4.4798 0.0488 -2.8256 36 1 3.8423 1.1970 -1.6240 37 1 5.3016 0.2454 -1.2590 38 1 5.5027 -3.1037 1.3735 39 1 7.9757 -3.1568 1.5536 40 1 10.0441 -0.9143 -1.9569 41 1 12.4977 -0.9645 -1.7877 42 1 13.5815 -2.1102 0.1005 43 1 12.2198 -3.2182 1.8240 44 1 9.7650 -3.1826 1.6690 45 1 5.9423 -0.8331 -2.2462 46 1 2.2489 -1.6319 1.1524 47 1 3.2468 -2.3968 4.2422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717748048.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:37 Heat of formation + Delta-G solvation = 41.602750 kcal Electronic energy + Delta-G solvation = -29058.532684 eV Core-core repulsion = 25206.568943 eV Total energy + Delta-G solvation = -3851.963741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.92730 -40.56915 -39.42131 -37.61297 -36.18001 -34.30240 -33.71519 -33.49060 -31.78090 -30.94989 -30.28895 -28.34494 -27.28223 -25.77939 -25.10248 -24.94674 -22.89291 -22.54271 -21.68400 -20.71075 -19.33109 -18.58141 -18.43937 -17.73077 -17.02829 -16.99024 -16.64440 -16.38069 -15.69949 -15.59536 -15.48569 -15.35855 -15.18622 -14.82115 -14.50835 -14.29938 -14.20439 -14.06619 -13.88767 -13.58778 -13.57256 -13.41784 -13.07757 -12.87261 -12.82536 -12.63516 -12.40831 -12.19034 -12.13361 -11.98850 -11.85250 -11.60319 -11.18159 -11.03007 -10.94611 -10.66644 -10.50684 -9.85640 -9.53448 -9.24006 -8.91842 -7.85673 -5.14598 -0.73633 0.13446 0.50564 0.61534 1.41353 1.43357 1.50852 1.76720 2.14595 2.55899 2.66179 2.98315 3.07226 3.43734 3.50370 3.53431 3.75656 3.87542 3.98623 4.04290 4.14292 4.16707 4.20861 4.23176 4.33521 4.49649 4.50533 4.59680 4.60355 4.65828 4.66687 4.71621 4.88261 4.89021 4.92855 5.02863 5.06154 5.08806 5.18488 5.27979 5.38027 5.45651 5.53938 5.58320 5.59513 5.63131 5.71693 6.05995 6.32915 6.42364 6.71085 7.23372 7.41160 8.24464 8.46965 9.35679 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.003291 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.913738 B = 8505.977486 C =10081.350288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.049 0.951 4 C 0.114 3.886 5 N -0.599 5.599 6 C 0.055 3.945 7 C 0.563 3.437 8 O -0.568 6.568 9 C -0.195 4.195 10 C -0.025 4.025 11 C -0.171 4.171 12 C 0.179 3.821 13 C -0.076 4.076 14 C -0.089 4.089 15 C -0.130 4.130 16 C -0.105 4.105 17 C -0.128 4.128 18 C -0.109 4.109 19 N -0.488 5.488 20 C 0.133 3.867 21 N -0.738 5.738 22 C -0.234 4.234 23 H 0.070 0.930 24 C -0.076 4.076 25 N -0.959 5.959 26 Si 0.962 3.038 27 H -0.291 1.291 28 H -0.298 1.298 29 H -0.271 1.271 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.127 0.873 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.160 0.840 40 H 0.134 0.866 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.133 0.867 45 H 0.208 0.792 46 H 0.382 0.618 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.057 3.406 -14.491 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 H 0.067 0.933 4 C -0.009 4.009 5 N -0.330 5.330 6 C -0.086 4.086 7 C 0.351 3.649 8 O -0.448 6.448 9 C -0.200 4.200 10 C -0.052 4.052 11 C -0.191 4.191 12 C 0.044 3.956 13 C -0.077 4.077 14 C -0.108 4.108 15 C -0.148 4.148 16 C -0.123 4.123 17 C -0.146 4.146 18 C -0.128 4.128 19 N -0.196 5.196 20 C -0.026 4.026 21 N -0.381 5.381 22 C -0.366 4.366 23 H 0.088 0.912 24 C -0.268 4.268 25 N -0.610 5.610 26 Si 0.792 3.208 27 H -0.218 1.218 28 H -0.225 1.225 29 H -0.196 1.196 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.145 0.855 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.177 0.823 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.167 0.833 44 H 0.151 0.849 45 H 0.224 0.776 46 H 0.217 0.783 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.199 3.500 -14.824 22.974 hybrid contribution -1.075 -0.630 2.301 2.617 sum 16.124 2.870 -12.523 20.617 Atomic orbital electron populations 1.22241 0.97297 1.00571 1.01248 1.21004 0.93222 0.95604 0.86842 0.93259 1.21890 0.78670 1.01620 0.98678 1.47548 1.07407 1.20546 1.57470 1.22652 0.95748 0.90838 0.99392 1.18238 0.87343 0.82498 0.76795 1.90752 1.65020 1.39254 1.49728 1.21030 0.94480 1.04686 0.99839 1.21654 0.95441 0.92738 0.95336 1.22173 0.92811 1.02590 1.01508 1.20272 0.94122 0.91482 0.89696 1.18625 0.88798 1.02303 0.97950 1.21472 0.94308 0.97081 0.97900 1.21479 0.93931 0.99923 0.99420 1.21707 1.01546 0.95599 0.93477 1.21412 0.92807 1.00102 1.00266 1.21521 0.96099 0.98206 0.96971 1.67739 1.11870 1.17809 1.22201 1.23995 0.87968 0.92779 0.97842 1.42912 1.78072 1.11193 1.05956 1.19560 1.34549 0.93838 0.88655 0.91200 1.25475 1.03567 0.96778 1.00985 1.69925 1.52541 1.09960 1.28564 0.85302 0.76718 0.78095 0.80652 1.21812 1.22512 1.19563 0.89890 0.94671 0.94638 0.85464 0.92077 0.88065 0.89504 0.90704 0.86289 0.82252 0.84854 0.83227 0.82950 0.83298 0.84888 0.77603 0.78262 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.49 71.98 0.68 -4.70 16 2 C 0.14 5.61 3.20 44.99 0.14 5.76 16 3 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 4 C 0.11 3.67 5.17 86.38 0.45 4.12 16 5 N -0.60 -19.63 2.77 -850.32 -2.36 -21.99 16 6 C 0.06 1.20 8.81 127.77 1.13 2.33 16 7 C 0.56 23.16 6.62 86.75 0.57 23.73 16 8 O -0.57 -28.95 14.39 -3.96 -0.06 -29.01 16 9 C -0.20 -7.15 5.49 -19.96 -0.11 -7.26 16 10 C -0.03 -0.98 9.73 22.70 0.22 -0.76 16 11 C -0.17 -5.36 9.44 22.53 0.21 -5.14 16 12 C 0.18 5.22 6.73 41.97 0.28 5.50 16 13 C -0.08 -1.85 5.88 -20.05 -0.12 -1.97 16 14 C -0.09 -1.86 9.57 22.50 0.22 -1.65 16 15 C -0.13 -2.02 10.03 22.24 0.22 -1.79 16 16 C -0.11 -1.45 10.04 22.32 0.22 -1.22 16 17 C -0.13 -2.02 10.03 22.23 0.22 -1.79 16 18 C -0.11 -2.24 9.42 22.50 0.21 -2.03 16 19 N -0.49 -13.97 9.40 -183.82 -1.73 -15.69 16 20 C 0.13 3.77 8.62 85.08 0.73 4.50 16 21 N -0.74 -39.10 4.52 -322.94 -1.46 -40.56 16 22 C -0.23 -13.47 9.93 84.03 0.83 -12.63 16 23 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 24 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 25 N -0.96 -61.74 13.06 21.65 0.28 -61.46 16 26 Si 0.96 48.10 29.55 68.60 2.03 50.13 16 27 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 28 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 29 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 30 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.13 2.72 8.07 -2.39 -0.02 2.70 16 34 H 0.06 2.25 7.36 -2.39 -0.02 2.24 16 35 H 0.10 1.36 7.45 -2.39 -0.02 1.35 16 36 H 0.09 1.67 8.10 -2.38 -0.02 1.65 16 37 H 0.07 1.78 4.71 -2.38 -0.01 1.77 16 38 H 0.12 5.38 8.01 -2.91 -0.02 5.36 16 39 H 0.16 4.12 6.17 -2.91 -0.02 4.10 16 40 H 0.13 2.75 7.53 -2.91 -0.02 2.73 16 41 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 42 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 43 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 44 H 0.13 2.48 6.17 -2.91 -0.02 2.46 16 45 H 0.21 4.26 4.77 -2.91 -0.01 4.24 16 46 H 0.38 22.64 5.22 -92.71 -0.48 22.16 16 47 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -81.54 385.09 3.81 -77.73 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: 0.52 Total: 39.93 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 6.59 Total: 0.92 kcal Atomic # 7 Polarization: -134.43 SS G_CDS: -5.27 Total: -139.70 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.06 Total: -29.01 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -81.54 3.81 -77.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717748048.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.330 kcal (2) G-P(sol) polarization free energy of solvation -81.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds