Wall clock time and date at job start Tue Mar 31 2020 23:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46326 * 2 1 4 4 N 1.46499 * 109.46928 * 240.00318 * 2 1 3 5 5 C 1.36935 * 119.99803 * 85.27717 * 4 2 1 6 6 H 1.08005 * 120.00392 * 359.71891 * 5 4 2 7 7 C 1.38814 * 120.00101 * 179.72056 * 5 4 2 8 8 N 1.31625 * 119.99527 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00333 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47155 * 90.00206 * 9 7 5 11 11 H 1.48503 * 109.47213 * 209.99787 * 9 7 5 12 12 H 1.48497 * 109.47042 * 330.00014 * 9 7 5 13 13 C 1.52996 * 109.47244 * 119.99911 * 2 1 3 14 14 H 1.09005 * 110.88235 * 60.09435 * 13 2 1 15 15 C 1.55151 * 111.00403 * 184.01575 * 13 2 1 16 16 C 1.54331 * 102.94163 * 153.57792 * 15 13 2 17 17 N 1.47027 * 107.26885 * 337.80984 * 16 15 13 18 18 C 1.34779 * 125.64324 * 178.97407 * 17 16 15 19 19 O 1.21605 * 119.99700 * 185.24525 * 18 17 16 20 20 C 1.47441 * 120.00146 * 5.24567 * 18 17 16 21 21 C 1.38949 * 121.17120 * 44.21016 * 20 18 17 22 22 N 1.32202 * 121.31727 * 179.76588 * 21 20 18 23 23 C 1.31196 * 123.69458 * 0.51194 * 22 21 20 24 24 C 1.40381 * 120.91823 * 359.76617 * 23 22 21 25 25 C 1.40391 * 122.14275 * 180.02562 * 24 23 22 26 26 C 1.36231 * 119.48566 * 180.02562 * 25 24 23 27 27 C 1.39298 * 121.10457 * 359.95659 * 26 25 24 28 28 C 1.36434 * 120.94940 * 0.02562 * 27 26 25 29 29 C 1.39695 * 119.43541 * 0.02562 * 28 27 26 30 30 C 1.47422 * 108.70261 * 358.93840 * 17 16 15 31 31 H 1.08999 * 109.46712 * 185.10244 * 1 2 3 32 32 H 1.08997 * 109.47609 * 305.09971 * 1 2 3 33 33 H 1.09000 * 109.47326 * 65.10706 * 1 2 3 34 34 H 0.96998 * 119.99737 * 264.99311 * 4 2 1 35 35 H 0.97006 * 119.99971 * 180.02562 * 8 7 5 36 36 H 1.08995 * 110.72378 * 271.94203 * 15 13 2 37 37 H 1.08998 * 110.72039 * 35.22100 * 15 13 2 38 38 H 1.09003 * 109.88216 * 218.39132 * 16 15 13 39 39 H 1.08999 * 110.01091 * 97.29978 * 16 15 13 40 40 H 1.07995 * 119.34162 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.54034 * 179.73577 * 23 22 21 42 42 H 1.07995 * 120.26000 * 0.02562 * 25 24 23 43 43 H 1.07997 * 119.44784 * 179.97438 * 26 25 24 44 44 H 1.08004 * 119.52203 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.28144 * 180.02562 * 28 27 26 46 46 H 1.09000 * 110.36748 * 265.28946 * 30 17 16 47 47 H 1.09007 * 110.45636 * 143.01131 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1544 -0.0060 -2.3743 6 1 1.8975 1.0420 -2.4228 7 6 2.6226 -0.6588 -3.5064 8 7 2.9361 -1.9358 -3.4471 9 14 2.8077 0.2748 -5.1136 10 1 4.1700 0.8608 -5.1917 11 1 2.6030 -0.6555 -6.2529 12 1 1.7972 1.3614 -5.1741 13 6 2.0401 -0.7212 1.2492 14 1 1.6908 -1.7536 1.2716 15 6 3.5877 -0.6547 1.3369 16 6 3.8533 -0.7718 2.8526 17 7 2.6241 -0.3570 3.5445 18 6 2.4431 -0.3371 4.8799 19 8 1.3513 -0.0658 5.3415 20 6 3.5689 -0.6441 5.7812 21 6 4.8321 -0.1081 5.5625 22 7 5.8424 -0.3778 6.3713 23 6 5.7470 -1.1623 7.4185 24 6 4.5288 -1.7747 7.7524 25 6 4.3975 -2.6181 8.8671 26 6 3.1892 -3.1846 9.1407 27 6 2.0806 -2.9405 8.3333 28 6 2.1726 -2.1259 7.2427 29 6 3.3972 -1.5295 6.9327 30 6 1.6228 0.0341 2.5357 31 1 -0.3633 -1.0236 0.0914 32 1 -0.3634 0.5909 0.8407 33 1 -0.3634 0.4326 -0.9322 34 1 2.2491 -1.6317 -1.1526 35 1 3.2637 -2.3920 -4.2381 36 1 4.0405 -1.4884 0.8004 37 1 3.9551 0.2972 0.9534 38 1 4.6774 -0.1170 3.1362 39 1 4.0940 -1.8031 3.1105 40 1 4.9907 0.5452 4.7173 41 1 6.6180 -1.3398 8.0319 42 1 5.2478 -2.8162 9.5027 43 1 3.0891 -3.8337 9.9980 44 1 1.1347 -3.4027 8.5742 45 1 1.3060 -1.9437 6.6244 46 1 1.6522 1.1110 2.3697 47 1 0.6254 -0.2736 2.8497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724563078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:47 Heat of formation + Delta-G solvation = 16.484324 kcal Electronic energy + Delta-G solvation = -28638.389477 eV Core-core repulsion = 24785.336520 eV Total energy + Delta-G solvation = -3853.052957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.03425 -40.83817 -39.05044 -38.36497 -36.82140 -34.40778 -33.79468 -32.22926 -32.03457 -30.96190 -30.60826 -28.80348 -26.65551 -25.81753 -24.66667 -24.41249 -23.33962 -22.83687 -21.12472 -20.66555 -19.38924 -19.04841 -18.56570 -18.32128 -17.37529 -17.08068 -16.62712 -16.46345 -15.78603 -15.72270 -15.42339 -15.22529 -15.06917 -14.89721 -14.72401 -14.54908 -14.14260 -14.07494 -13.86172 -13.60940 -13.36034 -13.21429 -13.19081 -12.92029 -12.90055 -12.76904 -12.34966 -12.29122 -12.17373 -12.01007 -11.68348 -11.56485 -11.47022 -11.34203 -11.11721 -10.91420 -10.49624 -10.11944 -9.81848 -9.16195 -8.97191 -7.90448 -5.17407 -0.92547 -0.16398 0.63584 1.48817 1.49637 1.50091 1.57968 1.77538 2.06656 2.58490 2.98722 3.13994 3.35517 3.42960 3.47957 3.58483 3.60826 3.67464 3.80981 3.87068 3.88168 4.18373 4.22369 4.24790 4.27786 4.32581 4.45146 4.50060 4.56916 4.59654 4.65407 4.70492 4.72262 4.85267 4.93353 4.99653 5.03160 5.04448 5.10285 5.17150 5.28446 5.36684 5.37944 5.45072 5.49543 5.55773 5.60145 5.84813 6.29382 6.32397 6.79741 6.89604 7.38753 8.14432 8.38060 9.32925 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.002285 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.721805 B =12252.187969 C =12773.616379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.050 0.950 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.965 3.035 10 H -0.288 1.288 11 H -0.300 1.300 12 H -0.272 1.272 13 C -0.093 4.093 14 H 0.074 0.926 15 C -0.110 4.110 16 C 0.102 3.898 17 N -0.608 5.608 18 C 0.581 3.419 19 O -0.570 6.570 20 C -0.193 4.193 21 C 0.122 3.878 22 N -0.517 5.517 23 C 0.186 3.814 24 C -0.134 4.134 25 C -0.070 4.070 26 C -0.123 4.123 27 C -0.082 4.082 28 C -0.143 4.143 29 C -0.010 4.010 30 C 0.120 3.880 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.168 0.832 41 H 0.210 0.790 42 H 0.179 0.821 43 H 0.165 0.835 44 H 0.148 0.852 45 H 0.114 0.886 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -1.885 28.906 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.795 3.205 10 H -0.215 1.215 11 H -0.227 1.227 12 H -0.197 1.197 13 C -0.113 4.113 14 H 0.093 0.907 15 C -0.148 4.148 16 C -0.020 4.020 17 N -0.340 5.340 18 C 0.371 3.629 19 O -0.451 6.451 20 C -0.198 4.198 21 C -0.021 4.021 22 N -0.224 5.224 23 C 0.015 3.985 24 C -0.136 4.136 25 C -0.089 4.089 26 C -0.141 4.141 27 C -0.102 4.102 28 C -0.161 4.161 29 C -0.015 4.015 30 C -0.002 4.002 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.185 0.815 41 H 0.226 0.774 42 H 0.196 0.804 43 H 0.182 0.818 44 H 0.166 0.834 45 H 0.132 0.868 46 H 0.098 0.902 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.335 -1.117 28.760 29.272 hybrid contribution -1.085 -0.284 -1.506 1.878 sum 4.250 -1.402 27.255 27.620 Atomic orbital electron populations 1.22367 0.98129 1.00829 1.00669 1.20292 0.92400 0.94977 0.84865 0.93173 1.42512 1.78297 1.10196 1.06028 1.19557 1.34195 0.94056 0.88363 0.90789 1.25441 1.03339 0.96805 1.01109 1.69805 1.52760 1.10102 1.29310 0.85252 0.77816 0.77442 0.79941 1.21504 1.22660 1.19749 1.22461 0.96024 0.99588 0.93198 0.90745 1.22493 0.95345 1.03602 0.93381 1.22335 0.86591 1.00795 0.92262 1.48488 1.16625 1.64519 1.04378 1.17789 0.87493 0.76747 0.80864 1.90755 1.27196 1.51079 1.76065 1.21748 0.95219 1.04579 0.98282 1.22952 0.86136 0.95778 0.97215 1.67245 1.32712 1.16529 1.05937 1.24022 0.96630 0.86746 0.91140 1.19280 0.94103 1.02008 0.98235 1.21499 0.99761 0.93362 0.94302 1.21400 0.92049 1.00158 1.00479 1.21457 1.00759 0.95002 0.92939 1.21053 0.96446 0.98896 0.99719 1.19104 0.95006 0.94640 0.92746 1.22237 0.92275 0.99589 0.86133 0.93926 0.91509 0.94389 0.79525 0.94241 0.90484 0.90376 0.89237 0.90954 0.81539 0.77399 0.80390 0.81762 0.83443 0.86801 0.90237 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 9.23 71.98 0.66 -4.87 16 2 C 0.18 6.75 2.40 44.99 0.11 6.86 16 3 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 4 N -0.73 -34.75 4.88 -322.93 -1.58 -36.33 16 5 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 6 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 7 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 8 N -0.97 -58.02 13.06 21.65 0.28 -57.74 16 9 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 C -0.09 -2.85 2.63 -9.41 -0.02 -2.87 16 14 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 15 C -0.11 -3.13 6.19 31.78 0.20 -2.94 16 16 C 0.10 2.43 5.92 86.73 0.51 2.94 16 17 N -0.61 -16.65 3.33 -815.61 -2.71 -19.37 16 18 C 0.58 17.49 7.07 86.67 0.61 18.10 16 19 O -0.57 -20.61 15.60 -4.05 -0.06 -20.67 16 20 C -0.19 -5.01 5.56 -18.60 -0.10 -5.11 16 21 C 0.12 2.75 9.64 84.81 0.82 3.57 16 22 N -0.52 -10.49 10.22 -193.73 -1.98 -12.47 16 23 C 0.19 2.71 11.00 85.31 0.94 3.64 16 24 C -0.13 -2.23 5.74 -21.34 -0.12 -2.35 16 25 C -0.07 -0.67 9.82 22.33 0.22 -0.45 16 26 C -0.12 -1.23 9.94 22.06 0.22 -1.01 16 27 C -0.08 -1.27 9.96 22.10 0.22 -1.05 16 28 C -0.14 -3.31 9.30 22.20 0.21 -3.10 16 29 C -0.01 -0.23 5.90 -19.94 -0.12 -0.35 16 30 C 0.12 3.38 5.54 86.85 0.48 3.86 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.91 7.59 -2.39 -0.02 1.89 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.37 19.20 7.80 -92.71 -0.72 18.48 16 35 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 36 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.08 2.28 8.04 -2.39 -0.02 2.26 16 38 H 0.09 1.78 5.76 -2.39 -0.01 1.77 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.17 3.32 6.11 -2.91 -0.02 3.30 16 41 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 43 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.11 3.15 6.41 -2.91 -0.02 3.14 16 46 H 0.08 2.13 8.03 -2.39 -0.02 2.11 16 47 H 0.07 2.18 7.99 -2.38 -0.02 2.16 16 Total: -1.00 -72.43 384.13 2.38 -70.05 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.27 Total: 29.22 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 6.13 Total: -0.28 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -5.99 Total: -125.90 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.06 Total: -20.67 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.43 2.38 -70.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724563078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.539 kcal (2) G-P(sol) polarization free energy of solvation -72.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds