Wall clock time and date at job start Tue Mar 31 2020 22:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.29236 * 2 1 4 4 C 1.53999 * 110.32817 * 122.13391 * 2 1 3 5 5 N 1.47483 * 107.08348 * 120.19722 * 4 2 1 6 6 C 1.34784 * 127.03484 * 154.51656 * 5 4 2 7 7 O 1.21601 * 119.99937 * 185.24647 * 6 5 4 8 8 C 1.47449 * 119.99839 * 4.97438 * 6 5 4 9 9 C 1.38867 * 120.46199 * 38.55446 * 8 6 5 10 10 C 1.38897 * 120.67414 * 179.97438 * 9 8 6 11 11 C 1.36377 * 121.27787 * 359.97438 * 10 9 8 12 12 C 1.40401 * 119.98169 * 0.02562 * 11 10 9 13 13 C 1.40464 * 121.95421 * 180.02562 * 12 11 10 14 14 N 1.31284 * 119.87974 * 179.25959 * 13 12 11 15 15 C 1.32545 * 122.73470 * 0.69636 * 14 13 12 16 16 C 1.36332 * 121.81979 * 359.52297 * 15 14 13 17 17 C 1.40292 * 118.70072 * 0.02562 * 16 15 14 18 18 C 1.48117 * 105.93576 * 334.78273 * 5 4 2 19 19 C 1.54599 * 103.42023 * 39.02093 * 18 5 4 20 20 H 1.09002 * 110.72917 * 81.24672 * 19 18 5 21 21 C 1.53002 * 110.83067 * 204.44914 * 19 18 5 22 22 N 1.46500 * 109.47199 * 288.56361 * 21 19 18 23 23 C 1.36934 * 119.99648 * 180.02562 * 22 21 19 24 24 H 1.07996 * 120.00425 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99541 * 179.97438 * 23 22 21 26 26 N 1.31620 * 120.00243 * 359.97438 * 25 23 22 27 27 Si 1.86809 * 120.00003 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46554 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47080 * 119.99881 * 27 25 23 30 30 H 1.48496 * 109.47093 * 240.00333 * 27 25 23 31 31 H 1.08997 * 109.47237 * 299.31997 * 1 2 3 32 32 H 1.08995 * 109.47319 * 59.31955 * 1 2 3 33 33 H 1.08998 * 109.47441 * 179.31864 * 1 2 3 34 34 H 1.09002 * 109.91439 * 0.83674 * 4 2 1 35 35 H 1.08998 * 110.07580 * 239.65002 * 4 2 1 36 36 H 1.07996 * 119.66290 * 359.95617 * 9 8 6 37 37 H 1.08000 * 119.36175 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.00771 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.05862 * 359.95024 * 13 12 11 40 40 H 1.07994 * 119.09072 * 179.49854 * 15 14 13 41 41 H 1.08002 * 120.64981 * 180.02562 * 16 15 14 42 42 H 1.09000 * 110.66646 * 157.50644 * 18 5 4 43 43 H 1.09000 * 110.65893 * 280.62627 * 18 5 4 44 44 H 1.09000 * 109.47351 * 48.56379 * 21 19 18 45 45 H 1.09001 * 109.46753 * 168.55888 * 21 19 18 46 46 H 0.96996 * 119.99899 * 359.97438 * 22 21 19 47 47 H 0.97000 * 119.99678 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7681 1.2229 5 7 2.8804 -1.8850 0.7102 6 6 3.8924 -2.5094 1.3448 7 8 4.5435 -3.3565 0.7642 8 6 4.2136 -2.1611 2.7410 9 6 3.1995 -1.8905 3.6503 10 6 3.4971 -1.5624 4.9668 11 6 4.7866 -1.4965 5.4059 12 6 5.8436 -1.7624 4.5209 13 6 7.1866 -1.7070 4.9289 14 7 8.1425 -1.9775 4.0707 15 6 7.9021 -2.2948 2.8065 16 6 6.6334 -2.3708 2.3132 17 6 5.5586 -2.1036 3.1744 18 6 2.3641 -2.1758 -0.6473 19 6 2.0671 -0.7735 -1.2263 20 1 2.9788 -0.3115 -1.6051 21 6 1.0052 -0.8522 -2.3250 22 7 1.5799 -1.4836 -3.5154 23 6 0.8111 -1.6622 -4.6344 24 1 -0.2188 -1.3372 -4.6395 25 6 1.3559 -2.2601 -5.7625 26 7 2.6115 -2.6548 -5.7568 27 14 0.3069 -2.5044 -7.2889 28 1 -1.0591 -1.9780 -7.0400 29 1 0.9170 -1.7765 -8.4305 30 1 0.2293 -3.9522 -7.6095 31 1 -0.3633 0.5032 0.8960 32 1 -0.3634 0.5243 -0.8838 33 1 -0.3634 -1.0275 -0.0122 34 1 1.2330 -1.1553 1.8112 35 1 2.6800 -0.1110 1.8377 36 1 2.1690 -1.9352 3.3305 37 1 2.6918 -1.3563 5.6562 38 1 4.9946 -1.2398 6.4341 39 1 7.4318 -1.4532 5.9496 40 1 8.7342 -2.4985 2.1489 41 1 6.4592 -2.6316 1.2797 42 1 3.1195 -2.6859 -1.2450 43 1 1.4508 -2.7683 -0.5926 44 1 0.1603 -1.4436 -1.9720 45 1 0.6657 0.1530 -2.5748 46 1 2.5052 -1.7745 -3.5112 47 1 2.9922 -3.0722 -6.5453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724604390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:19 Heat of formation + Delta-G solvation = 38.834819 kcal Electronic energy + Delta-G solvation = -28845.797125 eV Core-core repulsion = 24993.713358 eV Total energy + Delta-G solvation = -3852.083767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34469 -40.01651 -38.15058 -37.37998 -34.73906 -33.26288 -32.97059 -31.53766 -31.19783 -30.23437 -28.88773 -26.76112 -25.57190 -24.74945 -23.78554 -23.73094 -22.68951 -21.89124 -19.75330 -19.10536 -18.46891 -17.70378 -16.99483 -16.88305 -16.61386 -15.93024 -15.67881 -15.16069 -14.89883 -14.68543 -14.46373 -14.42782 -14.00259 -13.83218 -13.49841 -13.45223 -13.07601 -12.90941 -12.55949 -12.48816 -12.41491 -12.27629 -11.97251 -11.92386 -11.78149 -11.64010 -11.01478 -10.86994 -10.56219 -10.49237 -10.45137 -10.28208 -10.02911 -9.96453 -9.70459 -9.64820 -9.44391 -8.89003 -8.71919 -8.37878 -6.93026 -5.76306 -3.05803 -0.14172 0.55848 1.41495 2.44738 2.76227 2.99750 3.43304 3.48379 3.51130 3.79172 4.08314 4.17566 4.31586 4.36699 4.48849 4.54939 4.55964 4.61624 4.74401 4.79469 4.81443 5.03883 5.22040 5.26010 5.34184 5.37147 5.42463 5.50512 5.53383 5.58607 5.61472 5.65964 5.74448 5.77969 5.87947 5.91325 6.03020 6.03590 6.09762 6.14319 6.24134 6.30321 6.36354 6.43690 6.45141 6.68561 6.81148 7.47215 7.69615 7.70490 8.04126 8.41817 9.53097 10.10340 10.44296 11.46333 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.002539 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.312370 B =11023.603321 C =12249.493630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.102 3.898 5 N -0.613 5.613 6 C 0.575 3.425 7 O -0.527 6.527 8 C -0.115 4.115 9 C -0.063 4.063 10 C -0.128 4.128 11 C -0.065 4.065 12 C -0.118 4.118 13 C 0.141 3.859 14 N -0.486 5.486 15 C 0.077 3.923 16 C -0.144 4.144 17 C 0.010 3.990 18 C 0.116 3.884 19 C -0.103 4.103 20 H 0.083 0.917 21 C 0.165 3.835 22 N -0.734 5.734 23 C -0.241 4.241 24 H 0.071 0.929 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 6.001 26.756 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.021 4.021 5 N -0.346 5.346 6 C 0.364 3.636 7 O -0.405 6.405 8 C -0.118 4.118 9 C -0.083 4.083 10 C -0.146 4.146 11 C -0.085 4.085 12 C -0.120 4.120 13 C -0.031 4.031 14 N -0.194 5.194 15 C -0.066 4.066 16 C -0.163 4.163 17 C 0.004 3.996 18 C -0.006 4.006 19 C -0.123 4.123 20 H 0.101 0.899 21 C 0.037 3.963 22 N -0.378 5.378 23 C -0.372 4.372 24 H 0.089 0.911 25 C -0.209 4.209 26 N -0.579 5.579 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.182 0.818 40 H 0.174 0.826 41 H 0.172 0.828 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.042 5.473 26.486 27.216 hybrid contribution -1.196 -0.287 -1.182 1.705 sum 1.846 5.186 25.304 25.896 Atomic orbital electron populations 1.21905 0.93855 1.02493 1.02001 1.22044 0.96726 0.99361 0.93697 0.89879 1.22387 0.94415 0.88260 0.97031 1.48770 1.32840 1.34568 1.18448 1.17655 0.79158 0.81486 0.85337 1.90813 1.49385 1.33078 1.67203 1.19871 0.93148 1.04492 0.94282 1.21617 0.99267 0.94221 0.93147 1.20848 0.97122 1.00927 0.95658 1.21156 0.91969 0.96172 0.99228 1.18992 0.95935 1.03389 0.93693 1.23203 0.86902 0.93831 0.99134 1.67425 1.37370 1.10878 1.03701 1.22303 0.96382 0.96255 0.91648 1.22330 0.92712 0.98955 1.02310 1.17885 0.92672 0.96112 0.92906 1.22554 0.99676 0.97493 0.80845 1.22463 1.00479 0.94529 0.94845 0.89903 1.20709 0.93239 0.96148 0.86159 1.42416 1.13056 1.72082 1.10290 1.19234 0.94439 1.32709 0.90802 0.91135 1.24758 0.96282 1.01578 0.98328 1.69673 1.12449 1.46424 1.29369 0.86134 0.79291 0.77436 0.83413 1.20575 1.21883 1.21857 0.92976 0.91242 0.92089 0.91243 0.90920 0.84645 0.84795 0.84490 0.81838 0.82629 0.82790 0.89074 0.90470 0.95695 0.95832 0.78268 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.79 37.16 0.29 -1.17 16 2 C -0.10 -1.10 3.53 -89.25 -0.32 -1.41 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.10 1.03 4.98 -2.98 -0.01 1.02 16 5 N -0.61 -8.39 3.29 -171.23 -0.56 -8.96 16 6 C 0.57 8.67 7.21 -12.51 -0.09 8.58 16 7 O -0.53 -9.87 14.90 5.28 0.08 -9.80 16 8 C -0.11 -1.40 5.42 -104.70 -0.57 -1.97 16 9 C -0.06 -0.55 8.23 -39.10 -0.32 -0.88 16 10 C -0.13 -0.85 9.92 -40.01 -0.40 -1.25 16 11 C -0.07 -0.45 9.79 -39.44 -0.39 -0.83 16 12 C -0.12 -1.15 5.74 -106.88 -0.61 -1.77 16 13 C 0.14 1.30 11.05 -16.95 -0.19 1.12 16 14 N -0.49 -5.62 10.30 -13.11 -0.14 -5.75 16 15 C 0.08 0.90 11.07 -17.93 -0.20 0.70 16 16 C -0.14 -1.88 9.21 -39.50 -0.36 -2.25 16 17 C 0.01 0.13 5.76 -106.55 -0.61 -0.49 16 18 C 0.12 1.84 6.46 -2.31 -0.01 1.83 16 19 C -0.10 -1.58 2.99 -88.93 -0.27 -1.85 16 20 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 21 C 0.17 3.09 4.44 -4.04 -0.02 3.07 16 22 N -0.73 -18.18 5.52 -59.91 -0.33 -18.51 16 23 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 27 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.77 6.76 -51.93 -0.35 0.42 16 33 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 34 H 0.07 0.57 6.68 -51.93 -0.35 0.22 16 35 H 0.07 0.65 7.29 -51.93 -0.38 0.27 16 36 H 0.14 0.99 6.07 -52.49 -0.32 0.67 16 37 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.15 2.25 5.97 -52.49 -0.31 1.93 16 42 H 0.09 1.73 7.81 -51.93 -0.41 1.32 16 43 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 44 H 0.03 0.46 6.80 -51.93 -0.35 0.11 16 45 H 0.02 0.45 7.37 -51.93 -0.38 0.06 16 46 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 47 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -34.40 377.67 -10.35 -44.76 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.47 Total: 7.63 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -4.33 Total: -4.82 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.30 Total: -60.84 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.40 -10.35 -44.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724604390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.593 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds