Wall clock time and date at job start Tue Mar 31 2020 22:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.29236 * 2 1 4 4 C 1.53999 * 110.32817 * 122.13391 * 2 1 3 5 5 N 1.47483 * 107.08348 * 120.19722 * 4 2 1 6 6 C 1.34784 * 127.03484 * 154.51656 * 5 4 2 7 7 O 1.21601 * 119.99937 * 185.24647 * 6 5 4 8 8 C 1.47449 * 119.99839 * 4.97438 * 6 5 4 9 9 C 1.38867 * 120.46199 * 38.55446 * 8 6 5 10 10 C 1.38897 * 120.67414 * 179.97438 * 9 8 6 11 11 C 1.36377 * 121.27787 * 359.97438 * 10 9 8 12 12 C 1.40401 * 119.98169 * 0.02562 * 11 10 9 13 13 C 1.40464 * 121.95421 * 180.02562 * 12 11 10 14 14 N 1.31284 * 119.87974 * 179.25959 * 13 12 11 15 15 C 1.32545 * 122.73470 * 0.69636 * 14 13 12 16 16 C 1.36332 * 121.81979 * 359.52297 * 15 14 13 17 17 C 1.40292 * 118.70072 * 0.02562 * 16 15 14 18 18 C 1.48117 * 105.93576 * 334.78273 * 5 4 2 19 19 C 1.54599 * 103.42023 * 39.02093 * 18 5 4 20 20 H 1.09002 * 110.72917 * 81.24672 * 19 18 5 21 21 C 1.53002 * 110.83067 * 204.44914 * 19 18 5 22 22 N 1.46500 * 109.47199 * 288.56361 * 21 19 18 23 23 C 1.36934 * 119.99648 * 180.02562 * 22 21 19 24 24 H 1.07996 * 120.00425 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99541 * 179.97438 * 23 22 21 26 26 N 1.31620 * 120.00243 * 359.97438 * 25 23 22 27 27 Si 1.86809 * 120.00003 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46554 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47080 * 119.99881 * 27 25 23 30 30 H 1.48496 * 109.47093 * 240.00333 * 27 25 23 31 31 H 1.08997 * 109.47237 * 299.31997 * 1 2 3 32 32 H 1.08995 * 109.47319 * 59.31955 * 1 2 3 33 33 H 1.08998 * 109.47441 * 179.31864 * 1 2 3 34 34 H 1.09002 * 109.91439 * 0.83674 * 4 2 1 35 35 H 1.08998 * 110.07580 * 239.65002 * 4 2 1 36 36 H 1.07996 * 119.66290 * 359.95617 * 9 8 6 37 37 H 1.08000 * 119.36175 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.00771 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.05862 * 359.95024 * 13 12 11 40 40 H 1.07994 * 119.09072 * 179.49854 * 15 14 13 41 41 H 1.08002 * 120.64981 * 180.02562 * 16 15 14 42 42 H 1.09000 * 110.66646 * 157.50644 * 18 5 4 43 43 H 1.09000 * 110.65893 * 280.62627 * 18 5 4 44 44 H 1.09000 * 109.47351 * 48.56379 * 21 19 18 45 45 H 1.09001 * 109.46753 * 168.55888 * 21 19 18 46 46 H 0.96996 * 119.99899 * 359.97438 * 22 21 19 47 47 H 0.97000 * 119.99678 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7681 1.2229 5 7 2.8804 -1.8850 0.7102 6 6 3.8924 -2.5094 1.3448 7 8 4.5435 -3.3565 0.7642 8 6 4.2136 -2.1611 2.7410 9 6 3.1995 -1.8905 3.6503 10 6 3.4971 -1.5624 4.9668 11 6 4.7866 -1.4965 5.4059 12 6 5.8436 -1.7624 4.5209 13 6 7.1866 -1.7070 4.9289 14 7 8.1425 -1.9775 4.0707 15 6 7.9021 -2.2948 2.8065 16 6 6.6334 -2.3708 2.3132 17 6 5.5586 -2.1036 3.1744 18 6 2.3641 -2.1758 -0.6473 19 6 2.0671 -0.7735 -1.2263 20 1 2.9788 -0.3115 -1.6051 21 6 1.0052 -0.8522 -2.3250 22 7 1.5799 -1.4836 -3.5154 23 6 0.8111 -1.6622 -4.6344 24 1 -0.2188 -1.3372 -4.6395 25 6 1.3559 -2.2601 -5.7625 26 7 2.6115 -2.6548 -5.7568 27 14 0.3069 -2.5044 -7.2889 28 1 -1.0591 -1.9780 -7.0400 29 1 0.9170 -1.7765 -8.4305 30 1 0.2293 -3.9522 -7.6095 31 1 -0.3633 0.5032 0.8960 32 1 -0.3634 0.5243 -0.8838 33 1 -0.3634 -1.0275 -0.0122 34 1 1.2330 -1.1553 1.8112 35 1 2.6800 -0.1110 1.8377 36 1 2.1690 -1.9352 3.3305 37 1 2.6918 -1.3563 5.6562 38 1 4.9946 -1.2398 6.4341 39 1 7.4318 -1.4532 5.9496 40 1 8.7342 -2.4985 2.1489 41 1 6.4592 -2.6316 1.2797 42 1 3.1195 -2.6859 -1.2450 43 1 1.4508 -2.7683 -0.5926 44 1 0.1603 -1.4436 -1.9720 45 1 0.6657 0.1530 -2.5748 46 1 2.5052 -1.7745 -3.5112 47 1 2.9922 -3.0722 -6.5453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724604390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:18 Heat of formation + Delta-G solvation = 16.172016 kcal Electronic energy + Delta-G solvation = -28846.779858 eV Core-core repulsion = 24993.713358 eV Total energy + Delta-G solvation = -3853.066500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.17997 -41.04798 -39.28961 -38.16275 -36.47884 -34.46748 -33.93747 -32.88079 -32.29805 -31.13369 -30.24727 -27.77949 -26.97947 -25.68174 -25.06382 -24.51399 -23.96717 -23.11345 -20.73824 -20.37524 -19.29403 -19.03457 -18.38250 -17.77887 -17.57390 -17.04533 -16.80330 -16.46445 -16.12839 -15.74038 -15.38114 -15.34145 -15.21495 -15.19436 -14.72187 -14.54777 -14.38228 -13.87416 -13.69017 -13.58650 -13.49020 -13.14590 -13.05146 -12.94660 -12.84780 -12.79488 -12.72286 -12.52241 -12.11804 -11.86528 -11.66021 -11.54117 -11.40178 -11.28577 -11.04364 -10.92701 -10.52981 -10.15220 -9.85912 -9.14329 -9.00748 -7.95875 -5.25408 -0.86480 -0.16841 0.58917 1.45670 1.47049 1.55592 1.57109 1.77708 2.09706 2.54798 3.02204 3.21469 3.38077 3.44585 3.51933 3.55463 3.66578 3.75493 3.81785 3.85704 3.91396 4.10150 4.14407 4.21750 4.32326 4.36667 4.45634 4.51090 4.57005 4.62051 4.71629 4.74274 4.78766 4.80113 4.85078 4.89300 4.99514 5.06509 5.12817 5.21604 5.23332 5.26897 5.33585 5.37944 5.49755 5.54549 5.59446 5.77000 6.25728 6.40306 6.90902 6.93890 7.31280 8.08035 8.29203 9.28156 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.002539 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.312370 B =11023.603321 C =12249.493630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.099 0.901 4 C 0.102 3.898 5 N -0.612 5.612 6 C 0.568 3.432 7 O -0.584 6.584 8 C -0.155 4.155 9 C -0.040 4.040 10 C -0.125 4.125 11 C -0.041 4.041 12 C -0.133 4.133 13 C 0.156 3.844 14 N -0.513 5.513 15 C 0.075 3.925 16 C -0.180 4.180 17 C -0.008 4.008 18 C 0.120 3.880 19 C -0.097 4.097 20 H 0.060 0.940 21 C 0.167 3.833 22 N -0.751 5.751 23 C -0.239 4.239 24 H 0.082 0.918 25 C -0.082 4.082 26 N -0.974 5.974 27 Si 0.975 3.025 28 H -0.261 1.261 29 H -0.295 1.295 30 H -0.296 1.296 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.185 0.815 39 H 0.210 0.790 40 H 0.162 0.838 41 H 0.121 0.879 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.032 0.968 46 H 0.369 0.631 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 8.278 31.567 32.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.117 0.883 4 C -0.019 4.019 5 N -0.344 5.344 6 C 0.359 3.641 7 O -0.466 6.466 8 C -0.158 4.158 9 C -0.060 4.060 10 C -0.143 4.143 11 C -0.061 4.061 12 C -0.135 4.135 13 C -0.015 4.015 14 N -0.222 5.222 15 C -0.067 4.067 16 C -0.200 4.200 17 C -0.013 4.013 18 C -0.003 4.003 19 C -0.117 4.117 20 H 0.078 0.922 21 C 0.041 3.959 22 N -0.393 5.393 23 C -0.371 4.371 24 H 0.100 0.900 25 C -0.273 4.273 26 N -0.625 5.625 27 Si 0.804 3.196 28 H -0.185 1.185 29 H -0.222 1.222 30 H -0.223 1.223 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.172 0.828 37 H 0.197 0.803 38 H 0.202 0.798 39 H 0.226 0.774 40 H 0.179 0.821 41 H 0.139 0.861 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.200 0.800 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.195 7.806 31.337 32.295 hybrid contribution -0.376 -0.938 -2.497 2.694 sum -0.181 6.868 28.840 29.647 Atomic orbital electron populations 1.21897 0.92366 1.02436 1.03281 1.22055 0.97807 0.99516 0.91354 0.88280 1.22667 0.95122 0.87263 0.96864 1.48813 1.32961 1.35300 1.17318 1.18329 0.78434 0.80654 0.86699 1.90772 1.51256 1.35682 1.68874 1.19639 0.94204 1.08967 0.92945 1.21966 0.99100 0.91323 0.93589 1.21337 0.98432 0.99590 0.94923 1.21726 0.90953 0.92869 1.00542 1.19301 0.97370 1.03929 0.92861 1.24008 0.86377 0.90813 1.00315 1.67508 1.38374 1.12742 1.03547 1.22386 0.96037 0.95849 0.92404 1.22136 0.94241 1.02179 1.01453 1.18121 0.92440 0.96474 0.94298 1.22279 0.98209 0.97619 0.82164 1.22290 0.98827 0.94789 0.95808 0.92157 1.20878 0.94189 0.95776 0.85037 1.42713 1.12418 1.72475 1.11688 1.19701 0.94958 1.30982 0.91481 0.90034 1.25640 0.97538 1.02437 1.01726 1.69857 1.14456 1.48238 1.29930 0.85048 0.78476 0.76785 0.79315 1.18459 1.22206 1.22338 0.89440 0.92329 0.92723 0.87967 0.88879 0.82818 0.80348 0.79765 0.77360 0.82116 0.86111 0.93786 0.90360 0.94635 0.94999 0.79987 0.94187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.79 71.98 0.56 -1.83 16 2 C -0.09 -1.77 3.53 -9.91 -0.03 -1.80 16 3 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.10 1.80 4.98 86.53 0.43 2.23 16 5 N -0.61 -17.29 3.29 -813.92 -2.68 -19.97 16 6 C 0.57 18.42 7.21 86.67 0.62 19.04 16 7 O -0.58 -24.81 14.90 -4.03 -0.06 -24.87 16 8 C -0.15 -3.76 5.42 -19.92 -0.11 -3.86 16 9 C -0.04 -0.57 8.23 22.58 0.19 -0.38 16 10 C -0.13 -0.92 9.92 21.99 0.22 -0.70 16 11 C -0.04 -0.33 9.79 22.36 0.22 -0.11 16 12 C -0.13 -2.24 5.74 -21.33 -0.12 -2.36 16 13 C 0.16 2.47 11.05 85.32 0.94 3.41 16 14 N -0.51 -11.70 10.30 -195.40 -2.01 -13.71 16 15 C 0.08 1.93 11.07 84.14 0.93 2.86 16 16 C -0.18 -5.32 9.21 22.32 0.21 -5.11 16 17 C -0.01 -0.19 5.76 -21.11 -0.12 -0.31 16 18 C 0.12 4.11 6.46 86.61 0.56 4.67 16 19 C -0.10 -3.07 2.99 -9.70 -0.03 -3.10 16 20 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 21 C 0.17 6.34 4.44 86.38 0.38 6.72 16 22 N -0.75 -38.69 5.52 -343.45 -1.90 -40.58 16 23 C -0.24 -13.46 9.99 84.03 0.84 -12.63 16 24 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 25 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 26 N -0.97 -62.06 13.06 21.65 0.28 -61.78 16 27 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 28 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 29 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 30 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.13 6.76 -2.39 -0.02 1.12 16 33 H 0.05 1.00 7.51 -2.39 -0.02 0.98 16 34 H 0.10 1.19 6.68 -2.39 -0.02 1.18 16 35 H 0.09 1.33 7.29 -2.39 -0.02 1.31 16 36 H 0.15 1.52 6.07 -2.91 -0.02 1.50 16 37 H 0.18 -0.14 8.06 -2.91 -0.02 -0.17 16 38 H 0.19 -0.23 8.06 -2.91 -0.02 -0.25 16 39 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.12 4.26 5.97 -2.91 -0.02 4.25 16 42 H 0.04 1.90 7.81 -2.39 -0.02 1.88 16 43 H 0.08 2.61 7.93 -2.39 -0.02 2.59 16 44 H 0.04 1.30 6.80 -2.39 -0.02 1.28 16 45 H 0.03 1.18 7.37 -2.39 -0.02 1.17 16 46 H 0.37 20.94 7.67 -92.71 -0.71 20.23 16 47 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -84.12 377.67 2.11 -82.02 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.29 Total: 27.46 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.15 Total: 2.40 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -6.30 Total: -136.04 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.06 Total: -24.87 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -84.12 2.11 -82.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724604390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.189 kcal (2) G-P(sol) polarization free energy of solvation -84.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds