Wall clock time and date at job start Tue Mar 31 2020 22:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.65397 * 2 1 4 4 C 1.54589 * 110.57756 * 123.39405 * 2 1 3 5 5 N 1.48116 * 103.42454 * 81.17201 * 4 2 1 6 6 C 1.34772 * 127.03961 * 219.29161 * 5 4 2 7 7 O 1.21588 * 120.00470 * 184.22682 * 6 5 4 8 8 C 1.47570 * 119.99759 * 4.21992 * 6 5 4 9 9 C 1.38707 * 120.43440 * 317.18888 * 8 6 5 10 10 C 1.39000 * 120.75162 * 179.97438 * 9 8 6 11 11 C 1.36344 * 121.19003 * 0.02562 * 10 9 8 12 12 C 1.40351 * 119.93179 * 0.03833 * 11 10 9 13 13 C 1.40677 * 122.10861 * 179.97438 * 12 11 10 14 14 C 1.36269 * 118.66917 * 179.97438 * 13 12 11 15 15 N 1.32505 * 121.83647 * 0.02562 * 14 13 12 16 16 C 1.31312 * 122.72415 * 359.97438 * 15 14 13 17 17 C 1.40131 * 119.91471 * 0.02562 * 16 15 14 18 18 C 1.47491 * 105.92853 * 39.02133 * 5 4 2 19 19 C 1.53996 * 107.08648 * 334.78042 * 18 5 4 20 20 H 1.09004 * 110.32722 * 120.19092 * 19 18 5 21 21 C 1.53002 * 110.33081 * 242.30871 * 19 18 5 22 22 N 1.46497 * 109.46980 * 293.54647 * 21 19 18 23 23 C 1.36931 * 120.00130 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99949 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00243 * 180.02562 * 23 22 21 26 26 N 1.31620 * 120.00091 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99973 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47203 * 89.99828 * 27 25 23 29 29 H 1.48496 * 109.47400 * 209.99425 * 27 25 23 30 30 H 1.48501 * 109.47291 * 329.99904 * 27 25 23 31 31 H 1.09003 * 109.47115 * 183.18848 * 1 2 3 32 32 H 1.09000 * 109.47594 * 303.18843 * 1 2 3 33 33 H 1.09001 * 109.47229 * 63.19449 * 1 2 3 34 34 H 1.09007 * 110.61794 * 322.65958 * 4 2 1 35 35 H 1.08995 * 110.54739 * 199.65298 * 4 2 1 36 36 H 1.07998 * 119.62556 * 0.02708 * 9 8 6 37 37 H 1.07996 * 119.40250 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.03348 * 179.97438 * 11 10 9 39 39 H 1.08008 * 120.66806 * 0.25232 * 13 12 11 40 40 H 1.08003 * 119.07772 * 180.02562 * 14 13 12 41 41 H 1.07999 * 120.04533 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.91055 * 94.14500 * 18 5 4 43 43 H 1.09000 * 109.91403 * 215.41767 * 18 5 4 44 44 H 1.09001 * 109.46451 * 53.54738 * 21 19 18 45 45 H 1.08994 * 109.47349 * 173.54585 * 21 19 18 46 46 H 0.97006 * 120.00213 * 359.97438 * 22 21 19 47 47 H 0.97003 * 119.99544 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0733 -0.7966 1.2083 5 7 1.9872 -2.2051 0.7584 6 6 1.6222 -3.2722 1.4964 7 8 1.6696 -4.3883 1.0164 8 6 1.1650 -3.0859 2.8870 9 6 1.8299 -2.2116 3.7341 10 6 1.4046 -2.0307 5.0450 11 6 0.3260 -2.7043 5.5368 12 6 -0.3749 -3.5998 4.7142 13 6 -1.4931 -4.3189 5.1742 14 6 -2.1217 -5.1698 4.3152 15 7 -1.7080 -5.3351 3.0673 16 6 -0.6726 -4.6969 2.5723 17 6 0.0433 -3.7983 3.3745 18 6 2.3763 -2.2002 -0.6642 19 6 2.0775 -0.7915 -1.2101 20 1 2.9910 -0.3285 -1.5834 21 6 1.0271 -0.8634 -2.3203 22 7 1.5844 -1.5727 -3.4746 23 6 0.8217 -1.7608 -4.5962 24 1 -0.1909 -1.3866 -4.6296 25 6 1.3495 -2.4334 -5.6897 26 7 2.5834 -2.8899 -5.6488 27 14 0.3088 -2.6905 -7.2195 28 1 0.4991 -1.5456 -8.1459 29 1 0.7224 -3.9471 -7.8942 30 1 -1.1225 -2.7832 -6.8347 31 1 -0.3633 -1.0261 0.0572 32 1 -0.3634 0.5625 0.8600 33 1 -0.3634 0.4634 -0.9172 34 1 1.4489 -0.6346 2.0870 35 1 3.1076 -0.5212 1.4142 36 1 2.6872 -1.6645 3.3707 37 1 1.9382 -1.3441 5.6855 38 1 0.0121 -2.5498 6.5585 39 1 -1.8490 -4.1958 6.1865 40 1 -2.9811 -5.7249 4.6613 41 1 -0.3727 -4.8650 1.5485 42 1 3.4403 -2.4170 -0.7588 43 1 1.7937 -2.9415 -1.2110 44 1 0.1490 -1.3963 -1.9555 45 1 0.7423 0.1460 -2.6169 46 1 2.4937 -1.9092 -3.4444 47 1 2.9523 -3.3595 -6.4132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724613008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:33 Heat of formation + Delta-G solvation = 41.048235 kcal Electronic energy + Delta-G solvation = -29262.849033 eV Core-core repulsion = 25410.861247 eV Total energy + Delta-G solvation = -3851.987786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.34924 -40.02644 -38.09472 -37.40708 -34.68794 -33.32205 -32.71319 -31.51986 -31.17997 -30.25548 -28.84681 -26.99126 -25.51531 -24.70871 -23.82891 -23.68022 -22.66759 -21.70070 -19.73597 -19.10543 -18.44390 -17.61589 -17.07476 -16.96476 -16.40601 -16.30912 -15.68000 -15.07282 -14.80277 -14.61174 -14.42473 -14.26854 -13.90384 -13.69524 -13.63698 -13.35038 -13.07481 -12.95974 -12.77036 -12.44696 -12.31451 -12.18175 -11.89797 -11.83378 -11.75124 -11.64212 -11.02362 -10.83732 -10.63387 -10.50686 -10.41151 -10.24904 -9.94865 -9.92517 -9.66429 -9.63071 -9.45551 -8.85628 -8.65940 -8.36632 -6.90215 -5.73922 -3.02778 -0.12136 0.57724 1.40642 2.49303 2.74908 2.99380 3.46262 3.51658 3.53487 3.80605 4.08932 4.23712 4.32837 4.43105 4.46074 4.52550 4.60162 4.64087 4.75012 4.80655 4.89699 4.97341 5.21940 5.28921 5.36978 5.37297 5.40869 5.42567 5.55467 5.59293 5.62207 5.71476 5.76294 5.78111 5.85390 5.98231 6.00454 6.04390 6.12572 6.22495 6.29963 6.32815 6.39785 6.45262 6.47815 6.71491 6.86418 7.48533 7.72545 7.79326 8.06155 8.44718 9.56033 10.12719 10.46981 11.48880 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.002879 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.691282 B = 9723.852530 C =10706.728888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.094 3.906 5 N -0.606 5.606 6 C 0.571 3.429 7 O -0.525 6.525 8 C -0.082 4.082 9 C -0.089 4.089 10 C -0.103 4.103 11 C -0.095 4.095 12 C -0.026 4.026 13 C -0.162 4.162 14 C 0.080 3.920 15 N -0.486 5.486 16 C 0.159 3.841 17 C -0.081 4.081 18 C 0.112 3.888 19 C -0.104 4.104 20 H 0.087 0.913 21 C 0.162 3.838 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.175 0.825 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.024 0.976 45 H 0.022 0.978 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 5.923 27.555 28.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.028 4.028 5 N -0.339 5.339 6 C 0.359 3.641 7 O -0.402 6.402 8 C -0.087 4.087 9 C -0.108 4.108 10 C -0.122 4.122 11 C -0.113 4.113 12 C -0.031 4.031 13 C -0.182 4.182 14 C -0.063 4.063 15 N -0.193 5.193 16 C -0.011 4.011 17 C -0.083 4.083 18 C -0.009 4.009 19 C -0.123 4.123 20 H 0.105 0.895 21 C 0.035 3.965 22 N -0.378 5.378 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.192 0.808 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.042 0.958 45 H 0.040 0.960 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.480 4.598 26.794 27.408 hybrid contribution 0.349 0.389 -0.278 0.592 sum -3.132 4.987 26.516 27.162 Atomic orbital electron populations 1.21824 0.94243 1.02185 1.01882 1.22196 0.96770 0.98962 0.93860 0.89247 1.22805 1.01081 0.80732 0.98227 1.48716 1.65714 1.07044 1.12442 1.17696 0.77813 0.83789 0.84777 1.90847 1.54006 1.23062 1.72293 1.19888 0.96516 0.98010 0.94302 1.21500 0.99492 0.96086 0.93710 1.20903 0.96658 0.99398 0.95221 1.21115 0.95265 0.95356 0.99571 1.18113 0.95686 0.96612 0.92696 1.21888 0.96325 0.98574 1.01428 1.22322 0.98922 0.95980 0.89102 1.67578 1.13829 1.23354 1.14587 1.23658 0.88356 0.88701 1.00408 1.18751 0.96424 0.98796 0.94377 1.22238 1.00618 0.98909 0.79176 1.22358 1.00616 0.93970 0.95384 0.89508 1.20789 0.93652 0.95477 0.86626 1.42393 1.15523 1.67349 1.12504 1.19192 0.95961 1.29945 0.91987 0.91254 1.24732 0.96547 1.01111 0.98486 1.69655 1.14193 1.43299 1.30941 0.86202 0.79464 0.77228 0.83376 1.21770 1.21757 1.20753 0.92457 0.93208 0.91320 0.89877 0.90541 0.84642 0.84796 0.84731 0.84299 0.82870 0.80770 0.91386 0.88863 0.95788 0.96021 0.78308 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 7.97 37.16 0.30 -1.39 16 2 C -0.10 -1.08 3.60 -88.93 -0.32 -1.40 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.09 0.92 4.90 -2.32 -0.01 0.91 16 5 N -0.61 -8.26 3.19 -171.20 -0.55 -8.81 16 6 C 0.57 8.63 7.08 -12.46 -0.09 8.54 16 7 O -0.52 -9.97 15.37 5.29 0.08 -9.89 16 8 C -0.08 -1.01 5.43 -104.66 -0.57 -1.58 16 9 C -0.09 -0.78 7.76 -39.13 -0.30 -1.09 16 10 C -0.10 -0.70 9.93 -39.98 -0.40 -1.10 16 11 C -0.09 -0.70 9.79 -39.47 -0.39 -1.09 16 12 C -0.03 -0.26 5.74 -106.84 -0.61 -0.88 16 13 C -0.16 -1.45 9.88 -39.37 -0.39 -1.84 16 14 C 0.08 0.84 11.07 -17.97 -0.20 0.65 16 15 N -0.49 -6.79 10.30 -13.22 -0.14 -6.93 16 16 C 0.16 2.32 10.43 -17.06 -0.18 2.14 16 17 C -0.08 -1.03 5.76 -106.59 -0.61 -1.65 16 18 C 0.11 1.80 6.30 -2.98 -0.02 1.78 16 19 C -0.10 -1.54 2.99 -89.25 -0.27 -1.81 16 20 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 21 C 0.16 3.13 4.18 -4.04 -0.02 3.11 16 22 N -0.73 -18.32 5.33 -59.91 -0.32 -18.64 16 23 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 24 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 27 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 31 H 0.06 0.78 7.62 -51.93 -0.40 0.39 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.86 6.68 -51.93 -0.35 0.51 16 34 H 0.08 0.69 5.94 -51.92 -0.31 0.38 16 35 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 36 H 0.14 0.95 6.58 -52.49 -0.35 0.60 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.18 2.81 6.07 -52.49 -0.32 2.49 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.86 7.52 -51.93 -0.39 1.47 16 44 H 0.02 0.49 6.86 -51.93 -0.36 0.13 16 45 H 0.02 0.42 7.56 -51.93 -0.39 0.03 16 46 H 0.38 10.04 7.51 -40.82 -0.31 9.73 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -34.66 377.82 -10.36 -45.02 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.51 Total: 7.56 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -4.32 Total: -4.03 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.28 Total: -62.07 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.66 -10.36 -45.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724613008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.068 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds