Wall clock time and date at job start Tue Mar 31 2020 22:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.65397 * 2 1 4 4 C 1.54589 * 110.57756 * 123.39405 * 2 1 3 5 5 N 1.48116 * 103.42454 * 81.17201 * 4 2 1 6 6 C 1.34772 * 127.03961 * 219.29161 * 5 4 2 7 7 O 1.21588 * 120.00470 * 184.22682 * 6 5 4 8 8 C 1.47570 * 119.99759 * 4.21992 * 6 5 4 9 9 C 1.38707 * 120.43440 * 317.18888 * 8 6 5 10 10 C 1.39000 * 120.75162 * 179.97438 * 9 8 6 11 11 C 1.36344 * 121.19003 * 0.02562 * 10 9 8 12 12 C 1.40351 * 119.93179 * 0.03833 * 11 10 9 13 13 C 1.40677 * 122.10861 * 179.97438 * 12 11 10 14 14 C 1.36269 * 118.66917 * 179.97438 * 13 12 11 15 15 N 1.32505 * 121.83647 * 0.02562 * 14 13 12 16 16 C 1.31312 * 122.72415 * 359.97438 * 15 14 13 17 17 C 1.40131 * 119.91471 * 0.02562 * 16 15 14 18 18 C 1.47491 * 105.92853 * 39.02133 * 5 4 2 19 19 C 1.53996 * 107.08648 * 334.78042 * 18 5 4 20 20 H 1.09004 * 110.32722 * 120.19092 * 19 18 5 21 21 C 1.53002 * 110.33081 * 242.30871 * 19 18 5 22 22 N 1.46497 * 109.46980 * 293.54647 * 21 19 18 23 23 C 1.36931 * 120.00130 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99949 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00243 * 180.02562 * 23 22 21 26 26 N 1.31620 * 120.00091 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99973 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47203 * 89.99828 * 27 25 23 29 29 H 1.48496 * 109.47400 * 209.99425 * 27 25 23 30 30 H 1.48501 * 109.47291 * 329.99904 * 27 25 23 31 31 H 1.09003 * 109.47115 * 183.18848 * 1 2 3 32 32 H 1.09000 * 109.47594 * 303.18843 * 1 2 3 33 33 H 1.09001 * 109.47229 * 63.19449 * 1 2 3 34 34 H 1.09007 * 110.61794 * 322.65958 * 4 2 1 35 35 H 1.08995 * 110.54739 * 199.65298 * 4 2 1 36 36 H 1.07998 * 119.62556 * 0.02708 * 9 8 6 37 37 H 1.07996 * 119.40250 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.03348 * 179.97438 * 11 10 9 39 39 H 1.08008 * 120.66806 * 0.25232 * 13 12 11 40 40 H 1.08003 * 119.07772 * 180.02562 * 14 13 12 41 41 H 1.07999 * 120.04533 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.91055 * 94.14500 * 18 5 4 43 43 H 1.09000 * 109.91403 * 215.41767 * 18 5 4 44 44 H 1.09001 * 109.46451 * 53.54738 * 21 19 18 45 45 H 1.08994 * 109.47349 * 173.54585 * 21 19 18 46 46 H 0.97006 * 120.00213 * 359.97438 * 22 21 19 47 47 H 0.97003 * 119.99544 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0733 -0.7966 1.2083 5 7 1.9872 -2.2051 0.7584 6 6 1.6222 -3.2722 1.4964 7 8 1.6696 -4.3883 1.0164 8 6 1.1650 -3.0859 2.8870 9 6 1.8299 -2.2116 3.7341 10 6 1.4046 -2.0307 5.0450 11 6 0.3260 -2.7043 5.5368 12 6 -0.3749 -3.5998 4.7142 13 6 -1.4931 -4.3189 5.1742 14 6 -2.1217 -5.1698 4.3152 15 7 -1.7080 -5.3351 3.0673 16 6 -0.6726 -4.6969 2.5723 17 6 0.0433 -3.7983 3.3745 18 6 2.3763 -2.2002 -0.6642 19 6 2.0775 -0.7915 -1.2101 20 1 2.9910 -0.3285 -1.5834 21 6 1.0271 -0.8634 -2.3203 22 7 1.5844 -1.5727 -3.4746 23 6 0.8217 -1.7608 -4.5962 24 1 -0.1909 -1.3866 -4.6296 25 6 1.3495 -2.4334 -5.6897 26 7 2.5834 -2.8899 -5.6488 27 14 0.3088 -2.6905 -7.2195 28 1 0.4991 -1.5456 -8.1459 29 1 0.7224 -3.9471 -7.8942 30 1 -1.1225 -2.7832 -6.8347 31 1 -0.3633 -1.0261 0.0572 32 1 -0.3634 0.5625 0.8600 33 1 -0.3634 0.4634 -0.9172 34 1 1.4489 -0.6346 2.0870 35 1 3.1076 -0.5212 1.4142 36 1 2.6872 -1.6645 3.3707 37 1 1.9382 -1.3441 5.6855 38 1 0.0121 -2.5498 6.5585 39 1 -1.8490 -4.1958 6.1865 40 1 -2.9811 -5.7249 4.6613 41 1 -0.3727 -4.8650 1.5485 42 1 3.4403 -2.4170 -0.7588 43 1 1.7937 -2.9415 -1.2110 44 1 0.1490 -1.3963 -1.9555 45 1 0.7423 0.1460 -2.6169 46 1 2.4937 -1.9092 -3.4444 47 1 2.9523 -3.3595 -6.4132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724613008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:32 Heat of formation + Delta-G solvation = 17.748675 kcal Electronic energy + Delta-G solvation = -29263.859378 eV Core-core repulsion = 25410.861247 eV Total energy + Delta-G solvation = -3852.998131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.20815 -41.06538 -39.25430 -38.21818 -36.47025 -34.42915 -33.86630 -32.84342 -32.26335 -31.24893 -30.17748 -28.06342 -26.94302 -25.73826 -25.02113 -24.55682 -24.03292 -22.88798 -20.70833 -20.40400 -19.32984 -19.02497 -18.34041 -17.90382 -17.48894 -17.31232 -16.81876 -16.60048 -15.80081 -15.55350 -15.47365 -15.41457 -15.24040 -15.12186 -14.70230 -14.47640 -14.25398 -14.19014 -13.77665 -13.62623 -13.30145 -13.11415 -13.05622 -13.00687 -12.88866 -12.77019 -12.73994 -12.49262 -12.20732 -11.92571 -11.67364 -11.59387 -11.38309 -11.27107 -11.01663 -10.94270 -10.51998 -10.19296 -9.80819 -9.10776 -9.01669 -7.97898 -5.26372 -0.88542 -0.15032 0.57375 1.43324 1.45916 1.53774 1.54040 1.81524 2.08328 2.53164 3.00174 3.23745 3.35661 3.42013 3.50517 3.55915 3.71383 3.73034 3.79026 3.82465 3.92763 4.14881 4.20214 4.26251 4.31599 4.38241 4.51420 4.54396 4.59839 4.63787 4.64329 4.76505 4.76992 4.83561 4.85108 4.93506 4.97644 5.01321 5.04373 5.14731 5.21808 5.24964 5.32222 5.34189 5.46207 5.52244 5.60482 5.77184 6.24841 6.42221 6.91178 6.97576 7.30915 8.07279 8.29677 9.25641 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.002879 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.691282 B = 9723.852530 C =10706.728888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.128 0.872 4 C 0.095 3.905 5 N -0.605 5.605 6 C 0.565 3.435 7 O -0.586 6.586 8 C -0.121 4.121 9 C -0.063 4.063 10 C -0.099 4.099 11 C -0.075 4.075 12 C -0.046 4.046 13 C -0.133 4.133 14 C 0.050 3.950 15 N -0.514 5.514 16 C 0.117 3.883 17 C -0.093 4.093 18 C 0.117 3.883 19 C -0.095 4.095 20 H 0.097 0.903 21 C 0.164 3.836 22 N -0.746 5.746 23 C -0.246 4.246 24 H 0.072 0.928 25 C -0.075 4.075 26 N -0.968 5.968 27 Si 0.972 3.028 28 H -0.281 1.281 29 H -0.296 1.296 30 H -0.273 1.273 31 H 0.024 0.976 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.187 0.813 40 H 0.180 0.820 41 H 0.135 0.865 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.008 0.992 45 H 0.031 0.969 46 H 0.374 0.626 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 9.561 32.382 33.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.146 0.854 4 C -0.025 4.025 5 N -0.337 5.337 6 C 0.355 3.645 7 O -0.467 6.467 8 C -0.126 4.126 9 C -0.081 4.081 10 C -0.118 4.118 11 C -0.092 4.092 12 C -0.051 4.051 13 C -0.152 4.152 14 C -0.094 4.094 15 N -0.223 5.223 16 C -0.053 4.053 17 C -0.095 4.095 18 C -0.006 4.006 19 C -0.114 4.114 20 H 0.115 0.885 21 C 0.038 3.962 22 N -0.389 5.389 23 C -0.378 4.378 24 H 0.090 0.910 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.801 3.199 28 H -0.208 1.208 29 H -0.223 1.223 30 H -0.198 1.198 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.176 0.824 37 H 0.199 0.801 38 H 0.196 0.804 39 H 0.204 0.796 40 H 0.197 0.803 41 H 0.152 0.848 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.026 0.974 45 H 0.049 0.951 46 H 0.206 0.794 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.534 8.305 31.651 32.912 hybrid contribution 0.299 -0.710 -1.614 1.789 sum -3.235 7.595 30.037 31.150 Atomic orbital electron populations 1.21804 0.94969 1.00505 1.02709 1.22269 0.96071 1.00395 0.91968 0.85385 1.23150 1.03622 0.77530 0.98248 1.48780 1.64992 1.08754 1.11135 1.18366 0.76784 0.83122 0.86206 1.90799 1.56371 1.25588 1.73958 1.19638 0.98463 1.01502 0.93032 1.21897 0.98584 0.93558 0.94102 1.21408 0.96437 0.99543 0.94381 1.21651 0.94041 0.92769 1.00754 1.18516 0.96783 0.98010 0.91787 1.22398 0.94426 0.95670 1.02713 1.22818 1.00479 0.97793 0.88311 1.67418 1.13974 1.23939 1.16943 1.23161 0.90544 0.91824 0.99766 1.18832 0.96589 0.98441 0.95678 1.21964 0.99480 0.98390 0.80808 1.22256 0.99743 0.93915 0.95512 0.88502 1.20904 0.94448 0.94532 0.86314 1.42617 1.15001 1.67837 1.13421 1.19595 0.96280 1.28982 0.92943 0.90976 1.25565 0.97864 1.01644 1.01690 1.69812 1.15867 1.44593 1.31606 0.85162 0.78181 0.76890 0.79683 1.20770 1.22271 1.19814 0.95703 0.90025 0.92532 0.87433 0.87042 0.82363 0.80145 0.80362 0.79599 0.80332 0.84791 0.91488 0.94354 0.97432 0.95078 0.79443 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.97 71.98 0.57 -2.60 16 2 C -0.09 -1.72 3.60 -9.70 -0.03 -1.75 16 3 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.10 1.58 4.90 86.61 0.42 2.00 16 5 N -0.61 -17.09 3.19 -813.81 -2.60 -19.68 16 6 C 0.56 18.55 7.08 86.71 0.61 19.16 16 7 O -0.59 -25.50 15.37 -3.99 -0.06 -25.56 16 8 C -0.12 -2.99 5.43 -19.89 -0.11 -3.10 16 9 C -0.06 -0.87 7.76 22.56 0.18 -0.69 16 10 C -0.10 -0.73 9.93 22.01 0.22 -0.52 16 11 C -0.07 -0.66 9.79 22.34 0.22 -0.44 16 12 C -0.05 -0.81 5.74 -21.30 -0.12 -0.93 16 13 C -0.13 -1.97 9.88 22.41 0.22 -1.74 16 14 C 0.05 1.03 11.07 84.13 0.93 1.96 16 15 N -0.51 -15.80 10.30 -195.73 -2.02 -17.81 16 16 C 0.12 3.87 10.43 85.23 0.89 4.76 16 17 C -0.09 -2.45 5.76 -21.14 -0.12 -2.58 16 18 C 0.12 4.03 6.30 86.53 0.54 4.58 16 19 C -0.09 -2.84 2.99 -9.91 -0.03 -2.87 16 20 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 21 C 0.16 6.62 4.18 86.38 0.36 6.98 16 22 N -0.75 -39.22 5.33 -343.46 -1.83 -41.05 16 23 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 24 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 25 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 26 N -0.97 -61.42 13.06 21.65 0.28 -61.13 16 27 Si 0.97 48.14 29.55 68.60 2.03 50.17 16 28 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 29 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 30 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 31 H 0.02 0.70 7.62 -2.39 -0.02 0.68 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.38 6.68 -2.39 -0.02 1.36 16 34 H 0.11 1.31 5.94 -2.38 -0.01 1.30 16 35 H 0.11 1.18 8.13 -2.39 -0.02 1.16 16 36 H 0.16 1.41 6.58 -2.91 -0.02 1.39 16 37 H 0.18 -0.19 8.06 -2.91 -0.02 -0.22 16 38 H 0.18 0.10 8.06 -2.91 -0.02 0.07 16 39 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 40 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.13 5.32 6.07 -2.91 -0.02 5.30 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.73 7.52 -2.39 -0.02 1.71 16 44 H 0.01 0.34 6.86 -2.39 -0.02 0.32 16 45 H 0.03 1.22 7.56 -2.39 -0.02 1.20 16 46 H 0.37 20.77 7.51 -92.70 -0.70 20.08 16 47 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -87.25 377.82 2.17 -85.09 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.30 Total: 25.33 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.06 Total: 4.66 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -6.16 Total: -139.69 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.56 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -87.25 2.17 -85.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724613008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.835 kcal (2) G-P(sol) polarization free energy of solvation -87.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds