Wall clock time and date at job start Tue Mar 31 2020 22:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.30564 * 2 1 4 4 C 1.54383 * 110.33905 * 237.70811 * 2 1 3 5 5 N 1.48149 * 104.61608 * 217.26378 * 4 2 1 6 6 C 1.34780 * 127.84116 * 219.60893 * 5 4 2 7 7 O 1.21584 * 120.00036 * 174.71598 * 6 5 4 8 8 C 1.47564 * 119.99546 * 354.71911 * 6 5 4 9 9 C 1.38706 * 120.43657 * 321.48347 * 8 6 5 10 10 C 1.38999 * 120.75184 * 179.97438 * 9 8 6 11 11 C 1.36346 * 121.19311 * 0.02562 * 10 9 8 12 12 C 1.40355 * 119.92492 * 359.97438 * 11 10 9 13 13 C 1.40688 * 122.09645 * 179.97438 * 12 11 10 14 14 C 1.36269 * 118.65997 * 180.02562 * 13 12 11 15 15 N 1.32506 * 121.84485 * 359.97437 * 14 13 12 16 16 C 1.31312 * 122.72003 * 0.03005 * 15 14 13 17 17 C 1.40147 * 119.91720 * 359.73866 * 16 15 14 18 18 C 1.48147 * 104.32290 * 39.58708 * 5 4 2 19 19 C 1.54286 * 110.33660 * 122.17313 * 2 1 3 20 20 H 1.09004 * 110.33924 * 237.73743 * 19 2 1 21 21 C 1.52995 * 110.34706 * 359.97438 * 19 2 1 22 22 N 1.46497 * 109.46985 * 185.00058 * 21 19 2 23 23 C 1.36937 * 119.99668 * 180.02562 * 22 21 19 24 24 H 1.07997 * 120.00552 * 0.02562 * 23 22 21 25 25 C 1.38820 * 119.99970 * 179.97438 * 23 22 21 26 26 N 1.31616 * 119.99879 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99925 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47152 * 90.00286 * 27 25 23 29 29 H 1.48503 * 109.46731 * 210.00014 * 27 25 23 30 30 H 1.48499 * 109.47312 * 329.99815 * 27 25 23 31 31 H 1.08996 * 109.47273 * 297.83026 * 1 2 3 32 32 H 1.08998 * 109.47442 * 177.82827 * 1 2 3 33 33 H 1.09001 * 109.46778 * 57.82560 * 1 2 3 34 34 H 1.08999 * 110.41098 * 336.04449 * 4 2 1 35 35 H 1.08997 * 110.40723 * 98.48511 * 4 2 1 36 36 H 1.08001 * 119.62385 * 359.95789 * 9 8 6 37 37 H 1.08000 * 119.40378 * 180.02562 * 10 9 8 38 38 H 1.07993 * 120.03461 * 179.97438 * 11 10 9 39 39 H 1.07996 * 120.67266 * 359.97438 * 13 12 11 40 40 H 1.08002 * 119.07714 * 179.97438 * 14 13 12 41 41 H 1.07999 * 120.04397 * 179.97438 * 16 15 14 42 42 H 1.09004 * 110.40886 * 201.63123 * 18 5 4 43 43 H 1.09004 * 110.50480 * 79.25129 * 18 5 4 44 44 H 1.09004 * 109.47303 * 305.00243 * 21 19 2 45 45 H 1.08999 * 109.47093 * 64.99695 * 21 19 2 46 46 H 0.96996 * 120.00706 * 0.02562 * 22 21 19 47 47 H 0.97002 * 120.00205 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0666 -0.7733 -1.2237 5 7 3.2663 -1.4825 -0.7211 6 6 4.4426 -1.6676 -1.3526 7 8 5.3707 -2.1918 -0.7678 8 6 4.6038 -1.2340 -2.7538 9 6 3.5661 -1.3889 -3.6612 10 6 3.7107 -0.9822 -4.9825 11 6 4.8718 -0.4215 -5.4257 12 6 5.9471 -0.2461 -4.5409 13 6 7.1655 0.3266 -4.9494 14 6 8.1636 0.4632 -4.0317 15 7 8.0152 0.0732 -2.7741 16 6 6.9066 -0.4686 -2.3251 17 6 5.8173 -0.6490 -3.1882 18 6 2.8801 -1.9416 0.6335 19 6 2.0662 -0.7703 1.2245 20 1 2.7095 -0.1270 1.8250 21 6 0.9060 -1.3009 2.0691 22 7 1.4328 -1.9240 3.2858 23 6 0.5743 -2.4735 4.2003 24 1 -0.4909 -2.4479 4.0244 25 6 1.0734 -3.0646 5.3530 26 7 2.3717 -3.0963 5.5671 27 14 -0.0977 -3.8135 6.6008 28 1 -0.3294 -5.2418 6.2670 29 1 0.4951 -3.7124 7.9586 30 1 -1.3894 -3.0817 6.5688 31 1 -0.3633 0.4797 0.9088 32 1 -0.3634 -1.0269 -0.0389 33 1 -0.3633 0.5472 -0.8699 34 1 1.3234 -1.4877 -1.5777 35 1 2.3401 -0.0816 -2.0204 36 1 2.6354 -1.8308 -3.3374 37 1 2.8885 -1.1128 -5.6704 38 1 4.9639 -0.1126 -6.4564 39 1 7.3072 0.6508 -5.9697 40 1 9.1018 0.9017 -4.3381 41 1 6.8329 -0.7714 -1.2910 42 1 3.7671 -2.1313 1.2379 43 1 2.2644 -2.8390 0.5713 44 1 0.2466 -0.4761 2.3395 45 1 0.3470 -2.0398 1.4951 46 1 2.3895 -1.9474 3.4437 47 1 2.7205 -3.5095 6.3724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724613009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:36 Heat of formation + Delta-G solvation = 41.770652 kcal Electronic energy + Delta-G solvation = -28839.194077 eV Core-core repulsion = 24987.237617 eV Total energy + Delta-G solvation = -3851.956460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.36418 -39.98661 -38.14700 -37.44273 -34.71441 -33.36229 -32.90340 -31.54324 -31.19540 -30.29232 -28.85233 -26.80236 -25.40998 -24.72563 -23.85699 -23.73184 -22.66493 -22.03449 -19.79791 -18.94882 -18.40693 -17.66565 -17.08775 -16.92276 -16.59720 -15.99612 -15.59667 -15.23523 -14.90041 -14.62678 -14.54417 -14.43720 -14.09497 -13.75101 -13.68569 -13.38952 -13.10905 -12.86454 -12.53042 -12.41960 -12.36245 -12.14780 -11.97363 -11.94040 -11.80281 -11.74728 -10.98654 -10.85682 -10.57555 -10.50146 -10.43469 -10.21172 -9.99103 -9.92919 -9.68962 -9.66477 -9.48804 -8.86720 -8.76027 -8.40717 -6.91828 -5.75433 -3.04818 -0.16413 0.54690 1.35841 2.45882 2.73708 2.94819 3.44076 3.48828 3.51030 3.77482 4.06416 4.20780 4.30770 4.40272 4.46138 4.54467 4.57831 4.61693 4.72538 4.79513 4.87003 4.94914 5.20747 5.29945 5.34024 5.35915 5.39258 5.41373 5.55359 5.57749 5.60028 5.68820 5.75274 5.77445 5.82950 5.90328 5.96578 6.05856 6.09570 6.13084 6.27601 6.29667 6.38671 6.42296 6.48113 6.72856 6.82530 7.47080 7.69856 7.75064 8.01319 8.42850 9.53978 10.11525 10.45394 11.47176 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.002463 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.949275 B =11366.779249 C =12294.783415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C 0.100 3.900 5 N -0.614 5.614 6 C 0.574 3.426 7 O -0.528 6.528 8 C -0.086 4.086 9 C -0.085 4.085 10 C -0.103 4.103 11 C -0.093 4.093 12 C -0.027 4.027 13 C -0.162 4.162 14 C 0.079 3.921 15 N -0.487 5.487 16 C 0.158 3.842 17 C -0.080 4.080 18 C 0.115 3.885 19 C -0.105 4.105 20 H 0.082 0.918 21 C 0.163 3.837 22 N -0.734 5.734 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.178 0.822 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.027 0.973 45 H 0.023 0.977 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 9.087 -26.966 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.097 0.903 4 C -0.023 4.023 5 N -0.346 5.346 6 C 0.363 3.637 7 O -0.405 6.405 8 C -0.091 4.091 9 C -0.103 4.103 10 C -0.122 4.122 11 C -0.112 4.112 12 C -0.032 4.032 13 C -0.181 4.181 14 C -0.064 4.064 15 N -0.194 5.194 16 C -0.013 4.013 17 C -0.083 4.083 18 C -0.006 4.006 19 C -0.125 4.125 20 H 0.100 0.900 21 C 0.035 3.965 22 N -0.379 5.379 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.579 5.579 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.195 0.805 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.628 8.909 -26.141 27.855 hybrid contribution -1.063 -0.588 0.111 1.219 sum 2.565 8.321 -26.030 27.448 Atomic orbital electron populations 1.21903 0.93781 1.02668 1.01989 1.22064 0.96623 0.99230 0.93898 0.90306 1.22710 0.86716 0.95594 0.97313 1.48950 1.12389 1.54871 1.18404 1.17682 0.81364 0.79290 0.85353 1.90817 1.38618 1.44041 1.67040 1.19889 0.94115 1.01059 0.94078 1.21532 0.97995 0.97594 0.93211 1.20923 0.98082 0.97719 0.95509 1.21133 0.92355 0.98271 0.99398 1.18126 0.94975 0.97577 0.92562 1.21891 0.93329 1.01560 1.01359 1.22317 0.98965 0.96506 0.88645 1.67586 1.25212 1.10154 1.16491 1.23733 0.86561 0.90292 1.00709 1.18773 0.95036 1.00261 0.94252 1.22527 0.99901 0.97167 0.81021 1.22345 0.98205 0.96265 0.95696 0.89957 1.20845 0.92837 0.95111 0.87704 1.42421 1.06772 1.69024 1.19645 1.19189 0.89850 1.29598 0.98616 0.91210 1.24754 0.95825 1.01735 0.98602 1.69658 1.10566 1.49766 1.27944 0.86206 0.79856 0.79137 0.81070 1.21737 1.21784 1.20798 0.91256 0.91705 0.93105 0.90510 0.90367 0.84580 0.84734 0.84694 0.84296 0.82883 0.80534 0.89371 0.90100 0.95504 0.95950 0.78273 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.94 37.16 0.29 -1.18 16 2 C -0.10 -1.10 3.66 -89.22 -0.33 -1.43 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.10 1.00 4.85 -2.41 -0.01 0.99 16 5 N -0.61 -8.27 3.31 -170.52 -0.56 -8.83 16 6 C 0.57 8.46 7.21 -12.46 -0.09 8.37 16 7 O -0.53 -9.64 14.97 5.29 0.08 -9.56 16 8 C -0.09 -1.03 5.42 -104.66 -0.57 -1.60 16 9 C -0.08 -0.74 7.95 -39.13 -0.31 -1.05 16 10 C -0.10 -0.70 9.93 -39.98 -0.40 -1.10 16 11 C -0.09 -0.67 9.79 -39.47 -0.39 -1.06 16 12 C -0.03 -0.27 5.74 -106.84 -0.61 -0.88 16 13 C -0.16 -1.37 9.88 -39.37 -0.39 -1.76 16 14 C 0.08 0.79 11.07 -17.97 -0.20 0.59 16 15 N -0.49 -6.45 10.30 -13.21 -0.14 -6.59 16 16 C 0.16 2.18 10.41 -17.06 -0.18 2.00 16 17 C -0.08 -0.99 5.76 -106.59 -0.61 -1.61 16 18 C 0.12 1.82 6.43 -2.41 -0.02 1.81 16 19 C -0.11 -1.60 3.10 -89.22 -0.28 -1.88 16 20 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 21 C 0.16 3.01 4.40 -4.05 -0.02 2.99 16 22 N -0.73 -18.04 5.48 -59.91 -0.33 -18.37 16 23 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 27 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 31 H 0.07 0.77 6.67 -51.93 -0.35 0.43 16 32 H 0.06 0.68 6.90 -51.93 -0.36 0.33 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.66 7.65 -51.93 -0.40 0.27 16 35 H 0.08 0.66 6.57 -51.93 -0.34 0.32 16 36 H 0.14 0.99 6.56 -52.49 -0.34 0.65 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.18 2.67 5.91 -52.49 -0.31 2.36 16 42 H 0.09 1.62 7.85 -51.93 -0.41 1.21 16 43 H 0.08 1.33 7.75 -51.93 -0.40 0.93 16 44 H 0.03 0.50 6.49 -51.93 -0.34 0.16 16 45 H 0.02 0.41 6.94 -51.93 -0.36 0.05 16 46 H 0.38 10.07 7.61 -40.82 -0.31 9.76 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -33.95 376.72 -10.34 -44.29 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.42 Total: 7.66 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -4.34 Total: -4.06 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.30 Total: -61.33 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.95 -10.34 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724613009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.056 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds