Wall clock time and date at job start Tue Mar 31 2020 22:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.30564 * 2 1 4 4 C 1.54383 * 110.33905 * 237.70811 * 2 1 3 5 5 N 1.48149 * 104.61608 * 217.26378 * 4 2 1 6 6 C 1.34780 * 127.84116 * 219.60893 * 5 4 2 7 7 O 1.21584 * 120.00036 * 174.71598 * 6 5 4 8 8 C 1.47564 * 119.99546 * 354.71911 * 6 5 4 9 9 C 1.38706 * 120.43657 * 321.48347 * 8 6 5 10 10 C 1.38999 * 120.75184 * 179.97438 * 9 8 6 11 11 C 1.36346 * 121.19311 * 0.02562 * 10 9 8 12 12 C 1.40355 * 119.92492 * 359.97438 * 11 10 9 13 13 C 1.40688 * 122.09645 * 179.97438 * 12 11 10 14 14 C 1.36269 * 118.65997 * 180.02562 * 13 12 11 15 15 N 1.32506 * 121.84485 * 359.97437 * 14 13 12 16 16 C 1.31312 * 122.72003 * 0.03005 * 15 14 13 17 17 C 1.40147 * 119.91720 * 359.73866 * 16 15 14 18 18 C 1.48147 * 104.32290 * 39.58708 * 5 4 2 19 19 C 1.54286 * 110.33660 * 122.17313 * 2 1 3 20 20 H 1.09004 * 110.33924 * 237.73743 * 19 2 1 21 21 C 1.52995 * 110.34706 * 359.97438 * 19 2 1 22 22 N 1.46497 * 109.46985 * 185.00058 * 21 19 2 23 23 C 1.36937 * 119.99668 * 180.02562 * 22 21 19 24 24 H 1.07997 * 120.00552 * 0.02562 * 23 22 21 25 25 C 1.38820 * 119.99970 * 179.97438 * 23 22 21 26 26 N 1.31616 * 119.99879 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99925 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47152 * 90.00286 * 27 25 23 29 29 H 1.48503 * 109.46731 * 210.00014 * 27 25 23 30 30 H 1.48499 * 109.47312 * 329.99815 * 27 25 23 31 31 H 1.08996 * 109.47273 * 297.83026 * 1 2 3 32 32 H 1.08998 * 109.47442 * 177.82827 * 1 2 3 33 33 H 1.09001 * 109.46778 * 57.82560 * 1 2 3 34 34 H 1.08999 * 110.41098 * 336.04449 * 4 2 1 35 35 H 1.08997 * 110.40723 * 98.48511 * 4 2 1 36 36 H 1.08001 * 119.62385 * 359.95789 * 9 8 6 37 37 H 1.08000 * 119.40378 * 180.02562 * 10 9 8 38 38 H 1.07993 * 120.03461 * 179.97438 * 11 10 9 39 39 H 1.07996 * 120.67266 * 359.97438 * 13 12 11 40 40 H 1.08002 * 119.07714 * 179.97438 * 14 13 12 41 41 H 1.07999 * 120.04397 * 179.97438 * 16 15 14 42 42 H 1.09004 * 110.40886 * 201.63123 * 18 5 4 43 43 H 1.09004 * 110.50480 * 79.25129 * 18 5 4 44 44 H 1.09004 * 109.47303 * 305.00243 * 21 19 2 45 45 H 1.08999 * 109.47093 * 64.99695 * 21 19 2 46 46 H 0.96996 * 120.00706 * 0.02562 * 22 21 19 47 47 H 0.97002 * 120.00205 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0666 -0.7733 -1.2237 5 7 3.2663 -1.4825 -0.7211 6 6 4.4426 -1.6676 -1.3526 7 8 5.3707 -2.1918 -0.7678 8 6 4.6038 -1.2340 -2.7538 9 6 3.5661 -1.3889 -3.6612 10 6 3.7107 -0.9822 -4.9825 11 6 4.8718 -0.4215 -5.4257 12 6 5.9471 -0.2461 -4.5409 13 6 7.1655 0.3266 -4.9494 14 6 8.1636 0.4632 -4.0317 15 7 8.0152 0.0732 -2.7741 16 6 6.9066 -0.4686 -2.3251 17 6 5.8173 -0.6490 -3.1882 18 6 2.8801 -1.9416 0.6335 19 6 2.0662 -0.7703 1.2245 20 1 2.7095 -0.1270 1.8250 21 6 0.9060 -1.3009 2.0691 22 7 1.4328 -1.9240 3.2858 23 6 0.5743 -2.4735 4.2003 24 1 -0.4909 -2.4479 4.0244 25 6 1.0734 -3.0646 5.3530 26 7 2.3717 -3.0963 5.5671 27 14 -0.0977 -3.8135 6.6008 28 1 -0.3294 -5.2418 6.2670 29 1 0.4951 -3.7124 7.9586 30 1 -1.3894 -3.0817 6.5688 31 1 -0.3633 0.4797 0.9088 32 1 -0.3634 -1.0269 -0.0389 33 1 -0.3633 0.5472 -0.8699 34 1 1.3234 -1.4877 -1.5777 35 1 2.3401 -0.0816 -2.0204 36 1 2.6354 -1.8308 -3.3374 37 1 2.8885 -1.1128 -5.6704 38 1 4.9639 -0.1126 -6.4564 39 1 7.3072 0.6508 -5.9697 40 1 9.1018 0.9017 -4.3381 41 1 6.8329 -0.7714 -1.2910 42 1 3.7671 -2.1313 1.2379 43 1 2.2644 -2.8390 0.5713 44 1 0.2466 -0.4761 2.3395 45 1 0.3470 -2.0398 1.4951 46 1 2.3895 -1.9474 3.4437 47 1 2.7205 -3.5095 6.3724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724613009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:35 Heat of formation + Delta-G solvation = 19.493345 kcal Electronic energy + Delta-G solvation = -28840.160094 eV Core-core repulsion = 24987.237617 eV Total energy + Delta-G solvation = -3852.922477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.18985 -41.02096 -39.28929 -38.22008 -36.42994 -34.52041 -33.91320 -32.85398 -32.25628 -31.24597 -30.16371 -27.85572 -26.79017 -25.69623 -24.98729 -24.55367 -23.98089 -23.24602 -20.75726 -20.23460 -19.24379 -18.96269 -18.36178 -17.90070 -17.61341 -16.96213 -16.84255 -16.38516 -16.21332 -15.64762 -15.42715 -15.37149 -15.24709 -15.17047 -14.80114 -14.61355 -14.33999 -13.85045 -13.72374 -13.44288 -13.33083 -13.09218 -13.05494 -12.96365 -12.82248 -12.78575 -12.74836 -12.50603 -12.16394 -11.82426 -11.70046 -11.52171 -11.35230 -11.23080 -11.03180 -10.87775 -10.51120 -10.19975 -9.90183 -9.11656 -8.97663 -7.93805 -5.22949 -0.89957 -0.15259 0.55533 1.46985 1.49194 1.55949 1.57563 1.75790 2.07625 2.56615 3.00604 3.21275 3.39942 3.44377 3.53700 3.56697 3.71540 3.72812 3.80660 3.84238 3.92726 4.11215 4.18065 4.24263 4.37722 4.41215 4.44550 4.51301 4.60778 4.62817 4.64795 4.76858 4.80042 4.83376 4.84084 4.88278 4.97311 5.00895 5.16637 5.20659 5.21978 5.26192 5.33502 5.43666 5.51777 5.57265 5.60852 5.76294 6.27861 6.41206 6.89304 6.96752 7.33517 8.10944 8.31842 9.30089 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.002463 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.949275 B =11366.779249 C =12294.783415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.088 0.912 4 C 0.101 3.899 5 N -0.612 5.612 6 C 0.569 3.431 7 O -0.582 6.582 8 C -0.124 4.124 9 C -0.061 4.061 10 C -0.101 4.101 11 C -0.073 4.073 12 C -0.047 4.047 13 C -0.134 4.134 14 C 0.051 3.949 15 N -0.513 5.513 16 C 0.118 3.882 17 C -0.092 4.092 18 C 0.120 3.880 19 C -0.098 4.098 20 H 0.060 0.940 21 C 0.165 3.835 22 N -0.751 5.751 23 C -0.239 4.239 24 H 0.082 0.918 25 C -0.081 4.081 26 N -0.974 5.974 27 Si 0.974 3.026 28 H -0.288 1.288 29 H -0.299 1.299 30 H -0.265 1.265 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.179 0.821 39 H 0.185 0.815 40 H 0.180 0.820 41 H 0.143 0.857 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.034 0.966 46 H 0.369 0.631 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 10.486 -32.144 33.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.344 5.344 6 C 0.360 3.640 7 O -0.464 6.464 8 C -0.129 4.129 9 C -0.080 4.080 10 C -0.120 4.120 11 C -0.090 4.090 12 C -0.052 4.052 13 C -0.153 4.153 14 C -0.093 4.093 15 N -0.221 5.221 16 C -0.052 4.052 17 C -0.095 4.095 18 C -0.003 4.003 19 C -0.118 4.118 20 H 0.079 0.921 21 C 0.039 3.961 22 N -0.393 5.393 23 C -0.371 4.371 24 H 0.100 0.900 25 C -0.273 4.273 26 N -0.625 5.625 27 Si 0.803 3.197 28 H -0.215 1.215 29 H -0.226 1.226 30 H -0.189 1.189 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.172 0.828 37 H 0.196 0.804 38 H 0.196 0.804 39 H 0.203 0.797 40 H 0.197 0.803 41 H 0.160 0.840 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.200 0.800 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.513 10.344 -31.364 33.030 hybrid contribution -0.120 -0.959 1.540 1.818 sum 0.393 9.385 -29.824 31.268 Atomic orbital electron populations 1.21873 0.92154 1.02919 1.02981 1.22065 0.97802 0.99122 0.91903 0.89368 1.22980 0.85538 0.96243 0.97220 1.48989 1.13353 1.54772 1.17260 1.18332 0.80690 0.78339 0.86673 1.90778 1.40445 1.46492 1.68654 1.19634 0.95774 1.04768 0.92691 1.21879 0.97205 0.95218 0.93659 1.21393 0.99318 0.96489 0.94802 1.21658 0.90924 0.95842 1.00591 1.18522 0.96795 0.98142 0.91745 1.22387 0.91751 0.98405 1.02771 1.22820 1.00991 0.97611 0.87876 1.67448 1.25374 1.10472 1.18825 1.23298 0.88374 0.93398 1.00145 1.18850 0.94456 1.00700 0.95485 1.22234 0.98112 0.97488 0.82442 1.22191 0.96777 0.95982 0.96881 0.92150 1.21021 0.93965 0.95092 0.86008 1.42716 1.05953 1.69347 1.21272 1.19665 0.90697 1.28034 0.98730 0.90047 1.25625 0.97320 1.03327 1.01041 1.69844 1.12623 1.51626 1.28394 0.85124 0.78335 0.78269 0.77955 1.21499 1.22611 1.18943 0.92487 0.91968 0.89730 0.87946 0.87694 0.82802 0.80364 0.80393 0.79730 0.80307 0.84020 0.93527 0.90742 0.94577 0.94780 0.79962 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.94 71.98 0.57 -1.85 16 2 C -0.09 -1.85 3.66 -9.89 -0.04 -1.89 16 3 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.10 1.79 4.85 86.53 0.42 2.21 16 5 N -0.61 -17.11 3.31 -811.66 -2.69 -19.79 16 6 C 0.57 18.06 7.21 86.70 0.62 18.69 16 7 O -0.58 -24.19 14.97 -3.98 -0.06 -24.25 16 8 C -0.12 -2.95 5.42 -19.89 -0.11 -3.06 16 9 C -0.06 -0.86 7.95 22.56 0.18 -0.68 16 10 C -0.10 -0.77 9.93 22.01 0.22 -0.56 16 11 C -0.07 -0.62 9.79 22.34 0.22 -0.40 16 12 C -0.05 -0.79 5.74 -21.30 -0.12 -0.91 16 13 C -0.13 -1.84 9.88 22.41 0.22 -1.62 16 14 C 0.05 0.97 11.07 84.13 0.93 1.90 16 15 N -0.51 -14.67 10.30 -195.72 -2.02 -16.69 16 16 C 0.12 3.64 10.41 85.23 0.89 4.53 16 17 C -0.09 -2.32 5.76 -21.14 -0.12 -2.44 16 18 C 0.12 4.11 6.43 86.53 0.56 4.67 16 19 C -0.10 -3.10 3.10 -9.89 -0.03 -3.13 16 20 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 21 C 0.17 6.17 4.40 86.38 0.38 6.55 16 22 N -0.75 -38.24 5.48 -343.46 -1.88 -40.12 16 23 C -0.24 -13.35 9.99 84.04 0.84 -12.52 16 24 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 25 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 26 N -0.97 -61.74 13.06 21.65 0.28 -61.46 16 27 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 28 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 29 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 30 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 31 H 0.06 1.13 6.67 -2.39 -0.02 1.12 16 32 H 0.06 1.11 6.90 -2.39 -0.02 1.09 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.35 7.65 -2.39 -0.02 1.33 16 35 H 0.10 1.36 6.57 -2.39 -0.02 1.34 16 36 H 0.15 1.56 6.56 -2.91 -0.02 1.54 16 37 H 0.18 -0.07 8.06 -2.91 -0.02 -0.10 16 38 H 0.18 0.06 8.06 -2.91 -0.02 0.04 16 39 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 40 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.14 5.18 5.91 -2.91 -0.02 5.17 16 42 H 0.05 1.95 7.85 -2.39 -0.02 1.93 16 43 H 0.07 2.61 7.75 -2.39 -0.02 2.59 16 44 H 0.04 1.32 6.49 -2.39 -0.02 1.30 16 45 H 0.03 1.22 6.94 -2.39 -0.02 1.21 16 46 H 0.37 20.70 7.61 -92.71 -0.71 19.99 16 47 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -83.16 376.72 2.06 -81.10 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.30 Total: 27.24 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 6.10 Total: 5.19 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -6.30 Total: -138.06 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.06 Total: -24.25 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -83.16 2.06 -81.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724613009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.592 kcal (2) G-P(sol) polarization free energy of solvation -83.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds