Wall clock time and date at job start Tue Mar 31 2020 23:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47309 * 2 1 4 4 C 1.52998 * 109.46825 * 239.99625 * 2 1 3 5 5 N 1.46501 * 109.47240 * 185.00166 * 4 2 1 6 6 C 1.34767 * 120.00396 * 179.97438 * 5 4 2 7 7 O 1.21642 * 119.99692 * 0.02562 * 6 5 4 8 8 C 1.47247 * 120.00291 * 179.97438 * 6 5 4 9 9 C 1.36255 * 126.16701 * 180.02562 * 8 6 5 10 10 N 1.36339 * 106.88611 * 179.73928 * 9 8 6 11 11 C 1.46505 * 126.19347 * 180.02562 * 10 9 8 12 12 C 1.36165 * 107.60355 * 359.97438 * 10 9 8 13 13 O 1.35456 * 125.54908 * 179.97438 * 12 10 9 14 14 N 1.30700 * 108.89958 * 0.02562 * 12 10 9 15 15 N 1.46905 * 109.46939 * 120.00013 * 2 1 3 16 16 C 1.46900 * 110.99851 * 58.94771 * 15 2 1 17 17 C 1.46905 * 110.99897 * 294.99801 * 15 2 1 18 18 C 1.50698 * 109.46846 * 190.00290 * 17 15 2 19 19 O 1.21289 * 120.00262 * 359.97438 * 18 17 15 20 20 N 1.34780 * 119.99592 * 180.02562 * 18 17 15 21 21 C 1.37098 * 119.99609 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00093 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99613 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00180 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99690 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47048 * 90.00540 * 25 23 21 27 27 H 1.48501 * 109.47110 * 210.00192 * 25 23 21 28 28 H 1.48498 * 109.47031 * 330.00346 * 25 23 21 29 29 H 1.08994 * 109.47671 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46502 * 300.00362 * 1 2 3 31 31 H 1.09004 * 109.46820 * 59.99859 * 1 2 3 32 32 H 1.09006 * 109.47218 * 65.00181 * 4 2 1 33 33 H 1.09004 * 109.46996 * 305.00222 * 4 2 1 34 34 H 0.97003 * 119.99849 * 0.02562 * 5 4 2 35 35 H 1.08001 * 126.55470 * 359.70310 * 9 8 6 36 36 H 1.09006 * 109.46762 * 90.00167 * 11 10 9 37 37 H 1.09004 * 109.46744 * 209.99502 * 11 10 9 38 38 H 1.08997 * 109.47736 * 329.99785 * 11 10 9 39 39 H 0.96708 * 113.99667 * 90.00781 * 13 12 10 40 40 H 1.09004 * 109.46824 * 60.00751 * 16 15 2 41 41 H 1.08998 * 109.46699 * 179.97438 * 16 15 2 42 42 H 1.09000 * 109.47502 * 300.00038 * 16 15 2 43 43 H 1.09007 * 109.46850 * 310.00133 * 17 15 2 44 44 H 1.09000 * 109.47232 * 69.99980 * 17 15 2 45 45 H 0.97001 * 119.99904 * 359.97438 * 20 18 17 46 46 H 0.97005 * 119.99765 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1729 -1.4294 -2.1906 7 8 3.5680 -1.8858 -3.1421 8 6 5.6405 -1.5346 -2.1319 9 6 6.4431 -2.1144 -3.0679 10 7 7.7257 -1.9874 -2.6233 11 6 8.9298 -2.4656 -3.3073 12 6 7.6847 -1.3347 -1.4290 13 8 8.7592 -1.0175 -0.6677 14 7 6.4398 -1.0650 -1.1364 15 7 2.0197 -0.6925 1.1995 16 6 1.5282 -2.0761 1.2460 17 6 1.6487 0.0392 2.4181 18 6 2.3680 -0.5571 3.6006 19 8 3.1156 -1.4992 3.4437 20 7 2.1796 -0.0441 4.8326 21 6 2.8335 -0.5869 5.9084 22 1 3.4998 -1.4252 5.7686 23 6 2.6397 -0.0577 7.1785 24 7 1.8293 0.9627 7.3485 25 14 3.5301 -0.7977 8.6445 26 1 4.8345 -0.1124 8.8288 27 1 2.7028 -0.6240 9.8654 28 1 3.7607 -2.2449 8.4046 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -0.1584 -2.1370 33 1 1.6053 -1.7199 -1.2950 34 1 3.9824 -0.4629 -0.4316 35 1 6.1242 -2.5852 -3.9862 36 1 9.3086 -1.6835 -3.9654 37 1 9.6905 -2.7191 -2.5689 38 1 8.6863 -3.3498 -3.8963 39 1 9.1407 -0.1515 -0.8671 40 1 1.8762 -2.6151 0.3648 41 1 1.9059 -2.5657 2.1436 42 1 0.4383 -2.0741 1.2640 43 1 1.9298 1.0871 2.3125 44 1 0.5723 -0.0344 2.5726 45 1 1.5814 0.7091 4.9581 46 1 1.6943 1.3324 8.2352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725178775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:48 Heat of formation + Delta-G solvation = -29.384799 kcal Electronic energy + Delta-G solvation = -29449.885260 eV Core-core repulsion = 25183.994005 eV Total energy + Delta-G solvation = -4265.891255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36422 -39.55286 -38.65412 -37.52321 -37.13951 -34.51308 -34.14337 -33.67243 -31.20234 -30.86018 -29.35718 -27.97470 -27.70423 -26.17415 -25.27455 -23.84046 -22.87783 -21.63195 -20.16111 -19.86657 -18.99494 -18.71806 -17.76607 -17.57926 -16.52680 -16.48112 -16.03283 -15.77921 -15.40076 -14.85045 -14.71395 -14.62285 -14.56176 -14.46275 -14.00649 -13.79471 -13.44927 -13.25800 -13.12803 -12.97142 -12.87656 -12.53910 -12.19738 -12.16652 -11.74922 -11.69148 -11.38384 -11.14987 -11.11951 -10.84489 -10.65519 -10.47586 -10.34900 -10.15864 -10.05299 -9.97815 -9.40979 -8.94085 -8.62311 -8.37696 -7.90696 -7.75853 -6.35927 -3.76107 1.34462 1.94685 2.15899 3.21671 3.22146 3.30200 3.36395 3.50096 3.68766 3.98171 4.05524 4.28604 4.31313 4.40583 4.62539 4.80526 4.91449 4.92964 5.05343 5.20885 5.24055 5.29337 5.33814 5.53774 5.61507 5.62350 5.64563 5.81332 5.86622 5.98354 5.99468 6.08813 6.09843 6.25272 6.26062 6.35827 6.61069 6.67876 7.26890 7.33275 7.43394 7.46050 7.61169 7.85724 8.13202 8.39526 8.68966 9.24929 9.61643 10.14199 10.82034 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.002780 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.411645 B =10067.995355 C =12339.127896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.064 3.936 3 H 0.089 0.911 4 C 0.131 3.869 5 N -0.696 5.696 6 C 0.602 3.398 7 O -0.557 6.557 8 C -0.043 4.043 9 C 0.038 3.962 10 N -0.466 5.466 11 C 0.068 3.932 12 C 0.378 3.622 13 O -0.437 6.437 14 N -0.444 5.444 15 N -0.509 5.509 16 C 0.017 3.983 17 C 0.045 3.955 18 C 0.445 3.555 19 O -0.574 6.574 20 N -0.567 5.567 21 C -0.295 4.295 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.285 1.285 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.421 0.579 35 H 0.194 0.806 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.402 0.598 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.019 0.981 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.391 0.609 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 -0.601 -22.735 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.046 4.046 3 H 0.107 0.893 4 C 0.007 3.993 5 N -0.347 5.347 6 C 0.388 3.612 7 O -0.436 6.436 8 C -0.172 4.172 9 C -0.099 4.099 10 N -0.161 5.161 11 C -0.074 4.074 12 C 0.077 3.923 13 O -0.237 6.237 14 N -0.174 5.174 15 N -0.233 5.233 16 C -0.130 4.130 17 C -0.086 4.086 18 C 0.231 3.769 19 O -0.457 6.457 20 N -0.204 5.204 21 C -0.425 4.425 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.546 5.546 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.259 0.741 35 H 0.211 0.789 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.258 0.742 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.038 0.962 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.224 0.776 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.259 -1.613 -22.332 23.865 hybrid contribution -0.031 0.462 0.506 0.686 sum 8.229 -1.151 -21.826 23.354 Atomic orbital electron populations 1.22406 0.96655 1.02803 1.02633 1.22049 0.93376 0.98729 0.90429 0.89316 1.21413 0.80146 1.00966 0.96812 1.45667 1.07451 1.58082 1.23503 1.16788 0.84182 0.77822 0.82420 1.90778 1.68799 1.49853 1.34140 1.20434 0.94293 1.08412 0.94039 1.22602 0.81756 1.04240 1.01302 1.45859 1.07916 1.44848 1.17461 1.22133 0.85532 1.01201 0.98518 1.20317 0.87379 1.00474 0.84148 1.84933 1.41265 1.41353 1.56188 1.70973 0.98956 1.21915 1.25535 1.61803 1.58915 1.02429 1.00119 1.22591 0.96566 0.89497 1.04380 1.21873 0.98009 0.98451 0.90290 1.19757 0.86561 0.86868 0.83763 1.90504 1.40499 1.30041 1.84687 1.41863 1.41698 1.31309 1.05506 1.19691 1.23234 1.14690 0.84892 0.87965 1.25239 0.97394 0.96417 0.98972 1.69615 1.36821 1.24055 1.24068 0.85878 0.78910 0.79493 0.80128 1.20439 1.21026 1.19463 0.91824 0.91693 0.91929 0.91148 0.91294 0.74103 0.78872 0.90159 0.88867 0.89054 0.74167 0.92101 0.88697 0.96245 0.89473 0.93250 0.77570 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 8.50 37.16 0.32 -1.69 16 2 C 0.06 0.80 2.50 -67.71 -0.17 0.63 16 3 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 4 C 0.13 1.68 4.69 -4.04 -0.02 1.66 16 5 N -0.70 -10.16 5.38 -61.44 -0.33 -10.49 16 6 C 0.60 9.19 7.81 -12.60 -0.10 9.09 16 7 O -0.56 -9.34 16.88 5.24 0.09 -9.26 16 8 C -0.04 -0.60 6.97 -83.06 -0.58 -1.17 16 9 C 0.04 0.40 11.29 -16.26 -0.18 0.22 16 10 N -0.47 -4.18 3.16 -125.77 -0.40 -4.57 16 11 C 0.07 0.27 11.11 59.85 0.66 0.94 16 12 C 0.38 4.47 9.03 -89.18 -0.81 3.66 16 13 O -0.44 -4.19 13.55 -18.06 -0.24 -4.44 16 14 N -0.44 -6.61 11.03 -11.22 -0.12 -6.74 16 15 N -0.51 -8.33 3.93 -236.32 -0.93 -9.26 16 16 C 0.02 0.29 8.45 60.06 0.51 0.80 16 17 C 0.05 0.80 4.89 -4.97 -0.02 0.77 16 18 C 0.45 10.56 7.48 -10.99 -0.08 10.47 16 19 O -0.57 -15.61 13.91 5.55 0.08 -15.53 16 20 N -0.57 -14.48 5.29 -10.96 -0.06 -14.54 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 25 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.71 6.38 -51.93 -0.33 0.38 16 30 H 0.06 0.72 6.75 -51.93 -0.35 0.37 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.93 6.70 -51.93 -0.35 0.59 16 34 H 0.42 6.65 7.85 -40.82 -0.32 6.33 16 35 H 0.19 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.40 1.64 9.06 45.56 0.41 2.06 16 40 H 0.06 0.97 6.44 -51.93 -0.33 0.64 16 41 H 0.09 1.96 5.82 -51.93 -0.30 1.65 16 42 H 0.02 0.29 6.28 -51.93 -0.33 -0.04 16 43 H 0.09 1.40 8.00 -51.93 -0.42 0.98 16 44 H 0.05 0.80 6.94 -51.93 -0.36 0.44 16 45 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 385.33 15.07 5.81 5.81 Total: -1.00 -36.86 385.33 -6.59 -43.45 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -5.46 Total: 15.96 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: -0.71 Total: 17.37 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -1.11 Total: -69.75 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.08 Total: -29.22 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.86 -6.59 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725178775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.061 kcal (2) G-P(sol) polarization free energy of solvation -36.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds