Wall clock time and date at job start Tue Mar 31 2020 23:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47309 * 2 1 4 4 C 1.52998 * 109.46825 * 239.99625 * 2 1 3 5 5 N 1.46501 * 109.47240 * 185.00166 * 4 2 1 6 6 C 1.34767 * 120.00396 * 179.97438 * 5 4 2 7 7 O 1.21642 * 119.99692 * 0.02562 * 6 5 4 8 8 C 1.47247 * 120.00291 * 179.97438 * 6 5 4 9 9 C 1.36255 * 126.16701 * 180.02562 * 8 6 5 10 10 N 1.36339 * 106.88611 * 179.73928 * 9 8 6 11 11 C 1.46505 * 126.19347 * 180.02562 * 10 9 8 12 12 C 1.36165 * 107.60355 * 359.97438 * 10 9 8 13 13 O 1.35456 * 125.54908 * 179.97438 * 12 10 9 14 14 N 1.30700 * 108.89958 * 0.02562 * 12 10 9 15 15 N 1.46905 * 109.46939 * 120.00013 * 2 1 3 16 16 C 1.46900 * 110.99851 * 58.94771 * 15 2 1 17 17 C 1.46905 * 110.99897 * 294.99801 * 15 2 1 18 18 C 1.50698 * 109.46846 * 190.00290 * 17 15 2 19 19 O 1.21289 * 120.00262 * 359.97438 * 18 17 15 20 20 N 1.34780 * 119.99592 * 180.02562 * 18 17 15 21 21 C 1.37098 * 119.99609 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00093 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99613 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00180 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99690 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47048 * 90.00540 * 25 23 21 27 27 H 1.48501 * 109.47110 * 210.00192 * 25 23 21 28 28 H 1.48498 * 109.47031 * 330.00346 * 25 23 21 29 29 H 1.08994 * 109.47671 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46502 * 300.00362 * 1 2 3 31 31 H 1.09004 * 109.46820 * 59.99859 * 1 2 3 32 32 H 1.09006 * 109.47218 * 65.00181 * 4 2 1 33 33 H 1.09004 * 109.46996 * 305.00222 * 4 2 1 34 34 H 0.97003 * 119.99849 * 0.02562 * 5 4 2 35 35 H 1.08001 * 126.55470 * 359.70310 * 9 8 6 36 36 H 1.09006 * 109.46762 * 90.00167 * 11 10 9 37 37 H 1.09004 * 109.46744 * 209.99502 * 11 10 9 38 38 H 1.08997 * 109.47736 * 329.99785 * 11 10 9 39 39 H 0.96708 * 113.99667 * 90.00781 * 13 12 10 40 40 H 1.09004 * 109.46824 * 60.00751 * 16 15 2 41 41 H 1.08998 * 109.46699 * 179.97438 * 16 15 2 42 42 H 1.09000 * 109.47502 * 300.00038 * 16 15 2 43 43 H 1.09007 * 109.46850 * 310.00133 * 17 15 2 44 44 H 1.09000 * 109.47232 * 69.99980 * 17 15 2 45 45 H 0.97001 * 119.99904 * 359.97438 * 20 18 17 46 46 H 0.97005 * 119.99765 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1729 -1.4294 -2.1906 7 8 3.5680 -1.8858 -3.1421 8 6 5.6405 -1.5346 -2.1319 9 6 6.4431 -2.1144 -3.0679 10 7 7.7257 -1.9874 -2.6233 11 6 8.9298 -2.4656 -3.3073 12 6 7.6847 -1.3347 -1.4290 13 8 8.7592 -1.0175 -0.6677 14 7 6.4398 -1.0650 -1.1364 15 7 2.0197 -0.6925 1.1995 16 6 1.5282 -2.0761 1.2460 17 6 1.6487 0.0392 2.4181 18 6 2.3680 -0.5571 3.6006 19 8 3.1156 -1.4992 3.4437 20 7 2.1796 -0.0441 4.8326 21 6 2.8335 -0.5869 5.9084 22 1 3.4998 -1.4252 5.7686 23 6 2.6397 -0.0577 7.1785 24 7 1.8293 0.9627 7.3485 25 14 3.5301 -0.7977 8.6445 26 1 4.8345 -0.1124 8.8288 27 1 2.7028 -0.6240 9.8654 28 1 3.7607 -2.2449 8.4046 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -0.1584 -2.1370 33 1 1.6053 -1.7199 -1.2950 34 1 3.9824 -0.4629 -0.4316 35 1 6.1242 -2.5852 -3.9862 36 1 9.3086 -1.6835 -3.9654 37 1 9.6905 -2.7191 -2.5689 38 1 8.6863 -3.3498 -3.8963 39 1 9.1407 -0.1515 -0.8671 40 1 1.8762 -2.6151 0.3648 41 1 1.9059 -2.5657 2.1436 42 1 0.4383 -2.0741 1.2640 43 1 1.9298 1.0871 2.3125 44 1 0.5723 -0.0344 2.5726 45 1 1.5814 0.7091 4.9581 46 1 1.6943 1.3324 8.2352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725178775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:47 Heat of formation + Delta-G solvation = -62.965067 kcal Electronic energy + Delta-G solvation = -29451.341409 eV Core-core repulsion = 25183.994005 eV Total energy + Delta-G solvation = -4267.347405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.19051 -40.80226 -40.14239 -38.71757 -38.21968 -35.96145 -35.36772 -34.96671 -33.24162 -32.04165 -30.24066 -29.35398 -28.47687 -27.05220 -26.99542 -25.37659 -23.87145 -22.41374 -21.38045 -21.05695 -20.61318 -19.78210 -19.50203 -18.51948 -17.93450 -17.39993 -17.10689 -16.86083 -16.55596 -16.51344 -16.22793 -15.86548 -15.65174 -15.45241 -15.28302 -15.07411 -14.89487 -14.53472 -14.15224 -13.90930 -13.62915 -13.56111 -13.48202 -13.37018 -13.06178 -12.92284 -12.85814 -12.77523 -12.42372 -12.36070 -12.24225 -12.11358 -11.73345 -11.46039 -11.42009 -11.03740 -10.82331 -10.23889 -10.03476 -9.95939 -9.52250 -9.12132 -8.43793 -5.91581 0.49451 1.09385 1.38632 1.41278 1.41656 1.54373 2.11047 2.23856 2.30828 2.47525 2.76895 2.90426 3.23461 3.47670 3.65410 3.77094 3.83654 4.08457 4.14451 4.28914 4.33292 4.37055 4.38881 4.41969 4.56362 4.59453 4.66629 4.68669 4.70046 4.79273 4.88995 4.89685 5.04943 5.22026 5.26375 5.33425 5.43751 5.52315 5.65203 5.91630 6.10504 6.24626 6.48138 6.63043 6.65256 6.78565 7.17320 7.26615 7.61552 8.18681 8.73763 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.002780 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.411645 B =10067.995355 C =12339.127896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.070 3.930 3 H 0.101 0.899 4 C 0.132 3.868 5 N -0.699 5.699 6 C 0.599 3.401 7 O -0.580 6.580 8 C -0.085 4.085 9 C 0.060 3.940 10 N -0.455 5.455 11 C 0.060 3.940 12 C 0.373 3.627 13 O -0.445 6.445 14 N -0.492 5.492 15 N -0.526 5.526 16 C 0.028 3.972 17 C 0.059 3.941 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.576 5.576 21 C -0.329 4.329 22 H 0.076 0.924 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.414 0.586 35 H 0.222 0.778 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.424 0.576 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.039 0.961 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 -0.035 -24.089 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.039 4.039 3 H 0.119 0.881 4 C 0.008 3.992 5 N -0.348 5.348 6 C 0.386 3.614 7 O -0.461 6.461 8 C -0.213 4.213 9 C -0.079 4.079 10 N -0.148 5.148 11 C -0.080 4.080 12 C 0.071 3.929 13 O -0.248 6.248 14 N -0.223 5.223 15 N -0.250 5.250 16 C -0.120 4.120 17 C -0.072 4.072 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.214 5.214 21 C -0.459 4.459 22 H 0.094 0.906 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.251 0.749 35 H 0.238 0.762 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.284 0.716 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.128 0.872 44 H 0.089 0.911 45 H 0.229 0.771 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.618 -1.011 -23.706 25.244 hybrid contribution -0.035 0.274 0.843 0.888 sum 8.583 -0.737 -22.862 24.431 Atomic orbital electron populations 1.22358 0.94697 1.02964 1.03893 1.22101 0.94834 0.98663 0.88263 0.88056 1.21500 0.79277 1.00825 0.97562 1.45752 1.08114 1.57876 1.23080 1.17039 0.84960 0.77326 0.82091 1.90741 1.69477 1.51024 1.34859 1.20430 0.93965 1.11267 0.95615 1.23011 0.81807 1.02093 1.01003 1.46059 1.08799 1.43427 1.16521 1.22538 0.83684 1.02838 0.98904 1.20362 0.87159 1.00451 0.84947 1.84883 1.40505 1.43141 1.56306 1.70822 1.00601 1.23824 1.27021 1.61704 1.60122 1.02336 1.00872 1.22370 0.97541 0.89768 1.02297 1.21728 0.98214 0.98986 0.88227 1.20846 0.85671 0.85868 0.84671 1.90487 1.42184 1.31758 1.85469 1.41925 1.42027 1.31683 1.05804 1.19614 1.24458 1.15151 0.86629 0.90621 1.25986 0.97820 0.96608 1.00884 1.69671 1.37148 1.24445 1.25009 0.84973 0.78144 0.78330 0.77160 1.19701 1.19481 1.19973 0.92197 0.91569 0.89524 0.89504 0.92124 0.74937 0.76156 0.87715 0.88315 0.86985 0.71583 0.91767 0.92998 0.94262 0.87158 0.91078 0.77055 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 8.50 71.98 0.61 -2.80 16 2 C 0.07 1.64 2.50 44.92 0.11 1.75 16 3 H 0.10 2.17 8.03 -2.39 -0.02 2.15 16 4 C 0.13 3.27 4.69 86.38 0.40 3.68 16 5 N -0.70 -20.64 5.38 -466.53 -2.51 -23.15 16 6 C 0.60 18.55 7.81 86.61 0.68 19.22 16 7 O -0.58 -19.48 16.88 -4.16 -0.07 -19.55 16 8 C -0.08 -2.39 6.97 40.40 0.28 -2.11 16 9 C 0.06 1.20 11.29 83.53 0.94 2.14 16 10 N -0.45 -7.41 3.16 -662.73 -2.09 -9.50 16 11 C 0.06 0.31 11.11 127.77 1.42 1.73 16 12 C 0.37 8.66 9.03 179.84 1.62 10.28 16 13 O -0.44 -8.24 13.55 -87.53 -1.19 -9.42 16 14 N -0.49 -14.99 11.03 -303.16 -3.34 -18.34 16 15 N -0.53 -17.00 3.93 -901.58 -3.54 -20.54 16 16 C 0.03 0.96 8.45 127.69 1.08 2.04 16 17 C 0.06 2.06 4.89 85.56 0.42 2.47 16 18 C 0.44 21.43 7.48 87.66 0.66 22.09 16 19 O -0.61 -34.81 13.91 -3.06 -0.04 -34.85 16 20 N -0.58 -30.12 5.29 -306.98 -1.62 -31.74 16 21 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.48 13.05 21.66 0.28 -50.19 16 25 Si 0.99 44.01 29.55 68.60 2.03 46.03 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 29 H 0.06 1.19 6.38 -2.39 -0.02 1.18 16 30 H 0.07 1.26 6.75 -2.39 -0.02 1.25 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.06 1.61 6.70 -2.38 -0.02 1.59 16 34 H 0.41 13.48 7.85 -92.71 -0.73 12.75 16 35 H 0.22 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 37 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.42 3.07 9.06 -74.05 -0.67 2.40 16 40 H 0.06 2.10 6.44 -2.39 -0.02 2.08 16 41 H 0.05 2.23 5.82 -2.39 -0.01 2.21 16 42 H 0.04 1.15 6.28 -2.39 -0.01 1.13 16 43 H 0.11 3.34 8.00 -2.38 -0.02 3.32 16 44 H 0.07 2.18 6.94 -2.39 -0.02 2.17 16 45 H 0.40 19.56 7.90 -92.71 -0.73 18.82 16 46 H 0.28 14.19 8.31 -92.70 -0.77 13.42 16 Total: -1.00 -83.03 385.33 -3.67 -86.70 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -1.07 Total: 42.61 kcal Atomic # 6 Polarization: 32.44 SS G_CDS: 9.51 Total: 41.95 kcal Atomic # 7 Polarization: -140.63 SS G_CDS: -12.83 Total: -153.47 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -1.30 Total: -63.82 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -83.03 -3.67 -86.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725178775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.732 kcal (2) G-P(sol) polarization free energy of solvation -83.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds