Wall clock time and date at job start Tue Mar 31 2020 23:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 C 1.53000 * 109.47128 * 120.00198 * 2 1 3 5 5 N 1.46497 * 109.46877 * 175.31397 * 4 2 1 6 6 C 1.34779 * 119.99752 * 175.18798 * 5 4 2 7 7 O 1.21636 * 120.00482 * 0.02562 * 6 5 4 8 8 C 1.47258 * 119.99784 * 179.72803 * 6 5 4 9 9 C 1.36248 * 126.16319 * 180.27515 * 8 6 5 10 10 N 1.36336 * 106.88549 * 179.97438 * 9 8 6 11 11 C 1.46501 * 126.19897 * 179.97438 * 10 9 8 12 12 C 1.36167 * 107.60392 * 0.02562 * 10 9 8 13 13 O 1.35459 * 125.55310 * 179.97438 * 12 10 9 14 14 N 1.30702 * 108.89427 * 359.76119 * 12 10 9 15 15 N 1.46895 * 109.46603 * 240.00215 * 2 1 3 16 16 C 1.46900 * 111.00375 * 72.49759 * 15 2 1 17 17 C 1.46897 * 111.00322 * 308.53599 * 15 2 1 18 18 C 1.50693 * 109.47591 * 190.00367 * 17 15 2 19 19 O 1.21296 * 120.00016 * 0.02562 * 18 17 15 20 20 N 1.34779 * 120.00168 * 180.02562 * 18 17 15 21 21 C 1.37104 * 120.00064 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99909 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00047 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00288 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99812 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47089 * 90.00487 * 25 23 21 27 27 H 1.48508 * 109.47152 * 209.99920 * 25 23 21 28 28 H 1.48493 * 109.47551 * 329.99907 * 25 23 21 29 29 H 1.08994 * 109.47265 * 59.99806 * 1 2 3 30 30 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46748 * 299.99820 * 1 2 3 32 32 H 1.09000 * 109.46984 * 55.31732 * 4 2 1 33 33 H 1.08997 * 109.46891 * 295.31429 * 4 2 1 34 34 H 0.97004 * 120.00114 * 355.19340 * 5 4 2 35 35 H 1.08001 * 126.55719 * 359.93137 * 9 8 6 36 36 H 1.09003 * 109.46967 * 90.00494 * 11 10 9 37 37 H 1.09001 * 109.47388 * 210.00515 * 11 10 9 38 38 H 1.09001 * 109.47500 * 330.01131 * 11 10 9 39 39 H 0.96698 * 113.99932 * 89.99557 * 13 12 10 40 40 H 1.08993 * 109.47260 * 53.75974 * 16 15 2 41 41 H 1.09000 * 109.47171 * 173.76271 * 16 15 2 42 42 H 1.09004 * 109.46679 * 293.75560 * 16 15 2 43 43 H 1.09003 * 109.47103 * 310.00744 * 17 15 2 44 44 H 1.09004 * 109.46962 * 70.00370 * 17 15 2 45 45 H 0.97001 * 119.99803 * 359.97438 * 20 18 17 46 46 H 0.96998 * 120.00251 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5006 -0.8197 1.1941 6 6 4.1813 -1.3331 2.2379 7 8 3.5829 -1.7152 3.2256 8 6 5.6490 -1.4377 2.1801 9 6 6.4584 -1.9383 3.1551 10 7 7.7378 -1.8486 2.6924 11 6 8.9469 -2.2688 3.4049 12 6 7.6881 -1.2967 1.4486 13 8 8.7572 -1.0427 0.6564 14 7 6.4406 -1.0562 1.1418 15 7 2.0196 -0.6924 -1.1995 16 6 1.8062 0.1233 -2.4023 17 6 1.3895 -2.0120 -1.3396 18 6 2.0858 -2.7883 -2.4275 19 8 3.0159 -2.2913 -3.0268 20 7 1.6751 -4.0347 -2.7345 21 6 2.3090 -4.7411 -3.7239 22 1 3.1372 -4.2987 -4.2575 23 6 1.8860 -6.0263 -4.0400 24 7 2.4932 -6.7033 -4.9886 25 14 0.4540 -6.7919 -3.1165 26 1 -0.8154 -6.4695 -3.8164 27 1 0.6299 -8.2656 -3.0641 28 1 0.4092 -6.2494 -1.7349 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6098 -1.7219 1.2921 33 1 1.7468 -0.1613 2.1372 34 1 3.9779 -0.5154 0.4063 35 1 6.1464 -2.3304 4.1118 36 1 9.1636 -3.3109 3.1696 37 1 9.7857 -1.6447 3.0966 38 1 8.7911 -2.1637 4.4786 39 1 8.9962 -1.7749 0.0717 40 1 2.2479 1.1089 -2.2560 41 1 2.2754 -0.3617 -3.2583 42 1 0.7367 0.2279 -2.5853 43 1 1.4695 -2.5548 -0.3977 44 1 0.3381 -1.8869 -1.5986 45 1 0.9315 -4.4322 -2.2549 46 1 2.1976 -7.6003 -5.2096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725178777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:52 Heat of formation + Delta-G solvation = -23.708034 kcal Electronic energy + Delta-G solvation = -29864.283684 eV Core-core repulsion = 25598.638592 eV Total energy + Delta-G solvation = -4265.645092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32057 -39.59795 -38.74874 -37.48800 -37.20459 -34.48382 -34.18109 -33.73183 -31.62512 -30.96615 -29.31951 -28.20625 -27.79086 -26.31240 -24.88438 -23.83284 -22.82099 -21.58492 -20.32646 -20.00799 -19.16509 -18.70465 -18.11287 -17.54853 -16.60753 -16.43791 -16.09017 -15.71696 -15.30907 -14.96244 -14.74880 -14.63005 -14.52823 -14.37795 -14.20431 -13.77026 -13.39768 -13.20400 -13.16807 -13.00882 -12.73998 -12.59266 -12.39800 -12.19851 -12.12972 -11.94542 -11.69482 -11.31202 -11.17307 -10.90477 -10.77524 -10.55389 -10.44480 -10.00868 -9.95109 -9.93692 -9.48719 -8.91996 -8.59985 -8.50925 -8.13305 -7.88792 -6.27141 -3.77905 1.38686 1.96760 2.22619 3.06679 3.09781 3.17828 3.22096 3.57673 3.70046 3.80688 4.01283 4.14236 4.32849 4.44498 4.68488 4.68764 4.87361 4.95949 4.97124 5.04103 5.21916 5.24873 5.28586 5.46371 5.50122 5.59302 5.66274 5.72596 5.78612 5.86747 5.92159 5.94459 6.05322 6.11530 6.14826 6.29761 6.54838 6.64433 7.20313 7.30971 7.33540 7.47384 7.63245 7.88064 8.19624 8.42222 8.65339 9.00215 9.47637 9.89799 10.86167 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.003333 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.541613 B = 8398.582228 C = 9918.456250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 H 0.091 0.909 4 C 0.129 3.871 5 N -0.697 5.697 6 C 0.603 3.397 7 O -0.555 6.555 8 C -0.043 4.043 9 C 0.039 3.961 10 N -0.466 5.466 11 C 0.068 3.932 12 C 0.378 3.622 13 O -0.441 6.441 14 N -0.445 5.445 15 N -0.510 5.510 16 C 0.021 3.979 17 C 0.039 3.961 18 C 0.455 3.545 19 O -0.557 6.557 20 N -0.594 5.594 21 C -0.301 4.301 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.884 5.884 25 Si 0.878 3.122 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.421 0.579 35 H 0.194 0.806 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.405 0.595 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.018 0.982 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.369 0.631 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 11.129 17.928 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.045 4.045 3 H 0.109 0.891 4 C 0.005 3.995 5 N -0.348 5.348 6 C 0.388 3.612 7 O -0.434 6.434 8 C -0.172 4.172 9 C -0.098 4.098 10 N -0.160 5.160 11 C -0.074 4.074 12 C 0.077 3.923 13 O -0.242 6.242 14 N -0.174 5.174 15 N -0.234 5.234 16 C -0.126 4.126 17 C -0.093 4.093 18 C 0.241 3.759 19 O -0.438 6.438 20 N -0.233 5.233 21 C -0.430 4.430 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.524 5.524 25 Si 0.704 3.296 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.259 0.741 35 H 0.211 0.789 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.262 0.738 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.036 0.964 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.202 0.798 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.405 11.821 17.611 22.156 hybrid contribution -1.279 -1.466 0.592 2.034 sum 5.126 10.355 18.203 21.560 Atomic orbital electron populations 1.22408 0.96522 1.02879 1.02590 1.22058 0.93430 0.98537 0.90484 0.89137 1.21418 0.80297 1.00871 0.96961 1.45636 1.07250 1.62453 1.19446 1.16797 0.84188 0.77310 0.82878 1.90778 1.69219 1.50593 1.32830 1.20412 0.94228 1.09575 0.92965 1.22602 0.81591 1.04207 1.01429 1.45848 1.07880 1.46666 1.15647 1.22133 0.85346 1.01818 0.98090 1.20321 0.87092 1.01350 0.83524 1.84861 1.43047 1.43168 1.53078 1.70958 0.98815 1.21484 1.26191 1.61754 1.57135 1.02050 1.02457 1.22560 0.98602 0.97313 0.94152 1.21973 0.96344 0.91174 0.99782 1.19653 0.86898 0.82740 0.86598 1.90524 1.30159 1.68888 1.54263 1.42215 1.31943 1.14213 1.34965 1.19418 1.15457 0.96798 1.11346 0.86302 1.25015 0.98044 0.96251 0.96859 1.69620 1.40806 1.12171 1.29822 0.86699 0.82957 0.79933 0.79996 1.19690 1.20230 1.19456 0.91841 0.91777 0.91821 0.91554 0.90887 0.74129 0.78861 0.90039 0.88919 0.89096 0.73778 0.92114 0.88407 0.96384 0.89335 0.92996 0.79822 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 8.41 37.16 0.31 -1.54 16 2 C 0.06 0.76 2.47 -67.71 -0.17 0.60 16 3 H 0.09 0.99 7.93 -51.93 -0.41 0.58 16 4 C 0.13 1.66 4.94 -4.04 -0.02 1.64 16 5 N -0.70 -10.35 5.41 -61.44 -0.33 -10.68 16 6 C 0.60 9.54 7.81 -12.59 -0.10 9.44 16 7 O -0.56 -9.67 16.87 5.25 0.09 -9.58 16 8 C -0.04 -0.62 6.97 -83.06 -0.58 -1.20 16 9 C 0.04 0.44 11.29 -16.27 -0.18 0.25 16 10 N -0.47 -4.47 3.16 -125.77 -0.40 -4.86 16 11 C 0.07 0.32 11.11 59.85 0.66 0.98 16 12 C 0.38 4.64 9.03 -89.17 -0.81 3.84 16 13 O -0.44 -4.33 13.55 -18.07 -0.24 -4.58 16 14 N -0.44 -6.80 11.03 -11.22 -0.12 -6.92 16 15 N -0.51 -7.88 3.82 -236.34 -0.90 -8.78 16 16 C 0.02 0.32 8.91 60.06 0.53 0.86 16 17 C 0.04 0.66 4.31 -4.98 -0.02 0.63 16 18 C 0.46 10.42 7.52 -10.99 -0.08 10.34 16 19 O -0.56 -14.75 13.88 5.54 0.08 -14.68 16 20 N -0.59 -14.37 5.09 -10.96 -0.06 -14.42 16 21 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -26.06 13.96 55.50 0.77 -25.28 16 25 Si 0.88 19.73 27.74 -169.99 -4.71 15.02 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 29 H 0.06 0.63 6.92 -51.93 -0.36 0.27 16 30 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.07 0.91 6.65 -51.93 -0.35 0.56 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.42 6.65 7.78 -40.82 -0.32 6.33 16 35 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.35 8.13 -51.93 -0.42 -0.07 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.41 2.18 9.06 45.56 0.41 2.60 16 40 H 0.06 0.79 7.98 -51.93 -0.41 0.38 16 41 H 0.10 1.86 5.92 -51.93 -0.31 1.55 16 42 H 0.02 0.24 6.96 -51.93 -0.36 -0.12 16 43 H 0.09 1.43 6.30 -51.93 -0.33 1.10 16 44 H 0.05 0.78 6.81 -51.93 -0.35 0.43 16 45 H 0.37 7.95 5.76 -40.82 -0.24 7.71 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -37.61 382.76 -6.21 -43.82 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -5.45 Total: 17.07 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: -0.69 Total: 18.11 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -1.04 Total: -70.95 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.08 Total: -28.83 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.61 -6.21 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725178777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.109 kcal (2) G-P(sol) polarization free energy of solvation -37.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds