Wall clock time and date at job start Tue Mar 31 2020 23:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 C 1.53000 * 109.47128 * 120.00198 * 2 1 3 5 5 N 1.46497 * 109.46877 * 175.31397 * 4 2 1 6 6 C 1.34779 * 119.99752 * 175.18798 * 5 4 2 7 7 O 1.21636 * 120.00482 * 0.02562 * 6 5 4 8 8 C 1.47258 * 119.99784 * 179.72803 * 6 5 4 9 9 C 1.36248 * 126.16319 * 180.27515 * 8 6 5 10 10 N 1.36336 * 106.88549 * 179.97438 * 9 8 6 11 11 C 1.46501 * 126.19897 * 179.97438 * 10 9 8 12 12 C 1.36167 * 107.60392 * 0.02562 * 10 9 8 13 13 O 1.35459 * 125.55310 * 179.97438 * 12 10 9 14 14 N 1.30702 * 108.89427 * 359.76119 * 12 10 9 15 15 N 1.46895 * 109.46603 * 240.00215 * 2 1 3 16 16 C 1.46900 * 111.00375 * 72.49759 * 15 2 1 17 17 C 1.46897 * 111.00322 * 308.53599 * 15 2 1 18 18 C 1.50693 * 109.47591 * 190.00367 * 17 15 2 19 19 O 1.21296 * 120.00016 * 0.02562 * 18 17 15 20 20 N 1.34779 * 120.00168 * 180.02562 * 18 17 15 21 21 C 1.37104 * 120.00064 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99909 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00047 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00288 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99812 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47089 * 90.00487 * 25 23 21 27 27 H 1.48508 * 109.47152 * 209.99920 * 25 23 21 28 28 H 1.48493 * 109.47551 * 329.99907 * 25 23 21 29 29 H 1.08994 * 109.47265 * 59.99806 * 1 2 3 30 30 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46748 * 299.99820 * 1 2 3 32 32 H 1.09000 * 109.46984 * 55.31732 * 4 2 1 33 33 H 1.08997 * 109.46891 * 295.31429 * 4 2 1 34 34 H 0.97004 * 120.00114 * 355.19340 * 5 4 2 35 35 H 1.08001 * 126.55719 * 359.93137 * 9 8 6 36 36 H 1.09003 * 109.46967 * 90.00494 * 11 10 9 37 37 H 1.09001 * 109.47388 * 210.00515 * 11 10 9 38 38 H 1.09001 * 109.47500 * 330.01131 * 11 10 9 39 39 H 0.96698 * 113.99932 * 89.99557 * 13 12 10 40 40 H 1.08993 * 109.47260 * 53.75974 * 16 15 2 41 41 H 1.09000 * 109.47171 * 173.76271 * 16 15 2 42 42 H 1.09004 * 109.46679 * 293.75560 * 16 15 2 43 43 H 1.09003 * 109.47103 * 310.00744 * 17 15 2 44 44 H 1.09004 * 109.46962 * 70.00370 * 17 15 2 45 45 H 0.97001 * 119.99803 * 359.97438 * 20 18 17 46 46 H 0.96998 * 120.00251 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5006 -0.8197 1.1941 6 6 4.1813 -1.3331 2.2379 7 8 3.5829 -1.7152 3.2256 8 6 5.6490 -1.4377 2.1801 9 6 6.4584 -1.9383 3.1551 10 7 7.7378 -1.8486 2.6924 11 6 8.9469 -2.2688 3.4049 12 6 7.6881 -1.2967 1.4486 13 8 8.7572 -1.0427 0.6564 14 7 6.4406 -1.0562 1.1418 15 7 2.0196 -0.6924 -1.1995 16 6 1.8062 0.1233 -2.4023 17 6 1.3895 -2.0120 -1.3396 18 6 2.0858 -2.7883 -2.4275 19 8 3.0159 -2.2913 -3.0268 20 7 1.6751 -4.0347 -2.7345 21 6 2.3090 -4.7411 -3.7239 22 1 3.1372 -4.2987 -4.2575 23 6 1.8860 -6.0263 -4.0400 24 7 2.4932 -6.7033 -4.9886 25 14 0.4540 -6.7919 -3.1165 26 1 -0.8154 -6.4695 -3.8164 27 1 0.6299 -8.2656 -3.0641 28 1 0.4092 -6.2494 -1.7349 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6098 -1.7219 1.2921 33 1 1.7468 -0.1613 2.1372 34 1 3.9779 -0.5154 0.4063 35 1 6.1464 -2.3304 4.1118 36 1 9.1636 -3.3109 3.1696 37 1 9.7857 -1.6447 3.0966 38 1 8.7911 -2.1637 4.4786 39 1 8.9962 -1.7749 0.0717 40 1 2.2479 1.1089 -2.2560 41 1 2.2754 -0.3617 -3.2583 42 1 0.7367 0.2279 -2.5853 43 1 1.4695 -2.5548 -0.3977 44 1 0.3381 -1.8869 -1.5986 45 1 0.9315 -4.4322 -2.2549 46 1 2.1976 -7.6003 -5.2096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725178777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:51 Heat of formation + Delta-G solvation = -58.939899 kcal Electronic energy + Delta-G solvation = -29865.811453 eV Core-core repulsion = 25598.638592 eV Total energy + Delta-G solvation = -4267.172860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.19370 -40.88586 -40.18495 -38.73374 -38.21047 -36.01093 -35.38478 -34.98600 -33.73272 -32.03945 -30.24951 -29.67520 -28.48181 -27.19068 -26.59008 -25.19933 -23.82772 -22.41282 -21.73104 -21.12781 -20.89450 -19.92973 -19.47404 -18.50431 -18.10401 -17.36455 -17.11148 -16.89395 -16.69070 -16.46169 -16.03660 -15.77072 -15.65894 -15.38297 -15.23734 -15.11421 -14.91494 -14.60543 -14.35748 -14.00006 -13.87858 -13.67759 -13.54406 -13.42162 -13.06445 -13.01494 -12.92056 -12.81725 -12.43196 -12.41990 -12.13869 -11.98725 -11.75551 -11.46757 -11.44684 -11.04338 -10.83013 -10.34232 -10.21194 -10.02666 -9.52712 -9.13947 -8.40325 -6.00050 0.48885 1.05932 1.29815 1.34125 1.42854 1.43611 1.98811 2.21824 2.22827 2.49483 2.65152 2.88592 3.16064 3.26730 3.64543 3.79187 3.82961 4.01186 4.12512 4.18958 4.31488 4.36627 4.38391 4.40253 4.42351 4.61256 4.67156 4.69102 4.69610 4.80267 4.88962 4.93589 5.05792 5.25051 5.26503 5.31690 5.52274 5.55198 5.62644 5.92281 6.04415 6.22753 6.47577 6.59709 6.61680 6.78077 6.90780 7.26992 7.42096 8.00191 8.77456 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.003333 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.541613 B = 8398.582228 C = 9918.456250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.104 0.896 4 C 0.127 3.873 5 N -0.699 5.699 6 C 0.598 3.402 7 O -0.579 6.579 8 C -0.085 4.085 9 C 0.059 3.941 10 N -0.455 5.455 11 C 0.060 3.940 12 C 0.372 3.628 13 O -0.444 6.444 14 N -0.491 5.491 15 N -0.531 5.531 16 C 0.028 3.972 17 C 0.054 3.946 18 C 0.453 3.547 19 O -0.600 6.600 20 N -0.596 5.596 21 C -0.324 4.324 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.961 3.039 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.236 1.236 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.414 0.586 35 H 0.222 0.778 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.423 0.577 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.387 0.613 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 11.294 21.102 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.036 4.036 3 H 0.122 0.878 4 C 0.003 3.997 5 N -0.349 5.349 6 C 0.385 3.615 7 O -0.460 6.460 8 C -0.213 4.213 9 C -0.081 4.081 10 N -0.148 5.148 11 C -0.080 4.080 12 C 0.070 3.930 13 O -0.247 6.247 14 N -0.221 5.221 15 N -0.255 5.255 16 C -0.120 4.120 17 C -0.077 4.077 18 C 0.241 3.759 19 O -0.483 6.483 20 N -0.238 5.238 21 C -0.453 4.453 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.576 5.576 25 Si 0.781 3.219 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.251 0.749 35 H 0.238 0.762 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.283 0.717 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.222 0.778 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.720 12.006 20.794 24.470 hybrid contribution -0.528 -1.424 -0.443 1.582 sum 4.191 10.582 20.350 23.317 Atomic orbital electron populations 1.22370 0.94352 1.03264 1.03904 1.22081 0.95016 0.98406 0.88063 0.87827 1.21567 0.79197 1.00868 0.98063 1.45743 1.08112 1.62079 1.18920 1.17049 0.84914 0.76906 0.82673 1.90740 1.69863 1.51898 1.33499 1.20458 0.94045 1.12429 0.94381 1.23020 0.81693 1.02020 1.01343 1.46054 1.08781 1.45156 1.14824 1.22535 0.83537 1.02847 0.99048 1.20395 0.86879 1.01127 0.84628 1.84823 1.42075 1.44455 1.53358 1.70814 1.00443 1.23224 1.27634 1.61640 1.58302 1.01804 1.03743 1.22409 0.99481 0.97523 0.92586 1.21834 0.96928 0.91391 0.97590 1.20879 0.86037 0.82255 0.86735 1.90517 1.32132 1.69754 1.55907 1.42063 1.32513 1.14649 1.34581 1.18991 1.15180 0.98020 1.13099 0.92577 1.26045 1.01523 0.96074 0.97610 1.69798 1.43129 1.12892 1.31806 0.85420 0.78147 0.78475 0.79855 1.17950 1.19982 1.15972 0.91441 0.91826 0.89635 0.92241 0.89421 0.74896 0.76192 0.88419 0.87929 0.86687 0.71714 0.90161 0.92952 0.94440 0.87853 0.89957 0.77810 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 8.41 71.98 0.61 -2.32 16 2 C 0.07 1.55 2.47 44.92 0.11 1.66 16 3 H 0.10 1.98 7.93 -2.39 -0.02 1.97 16 4 C 0.13 3.04 4.94 86.38 0.43 3.47 16 5 N -0.70 -20.66 5.41 -466.53 -2.52 -23.18 16 6 C 0.60 18.96 7.81 86.61 0.68 19.64 16 7 O -0.58 -19.88 16.87 -4.15 -0.07 -19.95 16 8 C -0.08 -2.50 6.97 40.40 0.28 -2.22 16 9 C 0.06 1.25 11.29 83.53 0.94 2.19 16 10 N -0.45 -8.02 3.16 -662.74 -2.09 -10.11 16 11 C 0.06 0.39 11.11 127.77 1.42 1.81 16 12 C 0.37 9.03 9.03 179.84 1.62 10.65 16 13 O -0.44 -8.55 13.55 -87.56 -1.19 -9.73 16 14 N -0.49 -15.36 11.03 -303.16 -3.34 -18.70 16 15 N -0.53 -15.78 3.82 -901.64 -3.45 -19.22 16 16 C 0.03 0.82 8.91 127.69 1.14 1.96 16 17 C 0.05 1.74 4.31 85.56 0.37 2.10 16 18 C 0.45 21.08 7.52 87.65 0.66 21.74 16 19 O -0.60 -33.50 13.88 -3.08 -0.04 -33.54 16 20 N -0.60 -29.06 5.09 -306.98 -1.56 -30.62 16 21 C -0.32 -19.34 10.16 84.04 0.85 -18.48 16 22 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.94 -57.15 13.96 21.66 0.30 -56.85 16 25 Si 0.96 39.91 27.74 68.60 1.90 41.81 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.24 -8.49 6.52 99.48 0.65 -7.84 16 29 H 0.07 1.08 6.92 -2.39 -0.02 1.06 16 30 H 0.06 1.06 6.54 -2.39 -0.02 1.05 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.51 6.65 -2.39 -0.02 1.50 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.41 13.37 7.78 -92.71 -0.72 12.65 16 35 H 0.22 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.10 0.52 8.13 -2.39 -0.02 0.50 16 38 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.42 4.41 9.06 -74.06 -0.67 3.74 16 40 H 0.08 2.01 7.98 -2.39 -0.02 1.99 16 41 H 0.05 2.05 5.92 -2.39 -0.01 2.04 16 42 H 0.04 0.95 6.96 -2.38 -0.02 0.93 16 43 H 0.10 3.09 6.30 -2.39 -0.02 3.08 16 44 H 0.08 2.21 6.81 -2.38 -0.02 2.19 16 45 H 0.39 15.90 5.76 -92.71 -0.53 15.37 16 46 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -89.01 382.76 -3.42 -92.43 By element: Atomic # 1 Polarization: 46.73 SS G_CDS: -0.92 Total: 45.81 kcal Atomic # 6 Polarization: 32.30 SS G_CDS: 9.57 Total: 41.87 kcal Atomic # 7 Polarization: -146.02 SS G_CDS: -12.67 Total: -158.69 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -1.30 Total: -63.23 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.90 Total: 41.81 kcal Total: -89.01 -3.42 -92.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725178777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.485 kcal (2) G-P(sol) polarization free energy of solvation -89.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds