Wall clock time and date at job start Tue Mar 31 2020 23:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46550 * 2 1 4 4 C 1.50695 * 109.47150 * 120.00194 * 2 1 3 5 5 O 1.21281 * 120.00123 * 119.99674 * 4 2 1 6 6 N 1.34779 * 120.00232 * 300.00160 * 4 2 1 7 7 C 1.46499 * 120.00187 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46851 * 179.97438 * 7 6 4 9 9 H 1.08993 * 109.47416 * 294.99799 * 8 7 6 10 10 C 1.53001 * 109.46848 * 174.99855 * 8 7 6 11 11 O 1.42897 * 109.47472 * 305.00379 * 10 8 7 12 12 N 1.46901 * 109.47245 * 55.00305 * 8 7 6 13 13 C 1.46895 * 110.99816 * 204.99659 * 12 8 7 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 12 8 15 15 O 1.21297 * 119.99667 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72734 * 14 13 12 17 17 C 1.37095 * 119.99878 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00160 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99401 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00554 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46847 * 89.99945 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00376 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00260 * 21 19 17 25 25 N 1.46502 * 109.46860 * 240.00093 * 2 1 3 26 26 C 1.34946 * 126.03953 * 325.00192 * 25 2 1 27 27 C 1.35316 * 107.74502 * 179.97438 * 26 25 2 28 28 C 1.39867 * 107.92046 * 359.97438 * 27 26 25 29 29 N 1.30839 * 108.20347 * 359.74253 * 28 27 26 30 30 H 1.09005 * 109.47051 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47235 * 299.99982 * 1 2 3 32 32 H 1.08996 * 109.47374 * 59.99693 * 1 2 3 33 33 H 0.97002 * 119.99552 * 359.97438 * 6 4 2 34 34 H 1.08997 * 109.47243 * 60.00001 * 7 6 4 35 35 H 1.08999 * 109.46836 * 299.99904 * 7 6 4 36 36 H 1.09005 * 109.46975 * 65.00179 * 10 8 7 37 37 H 1.08997 * 109.47675 * 185.00010 * 10 8 7 38 38 H 0.96703 * 114.00471 * 180.02562 * 11 10 8 39 39 H 1.00902 * 110.99849 * 328.95038 * 12 8 7 40 40 H 1.09001 * 109.47613 * 60.00104 * 13 12 8 41 41 H 1.08998 * 109.47678 * 300.00000 * 13 12 8 42 42 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 43 43 H 0.97004 * 120.00112 * 179.97438 * 20 19 17 44 44 H 1.07998 * 126.12468 * 359.97438 * 26 25 2 45 45 H 1.07996 * 126.03582 * 179.97438 * 27 26 25 46 46 H 1.07997 * 125.89916 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4546 7 6 2.1956 -0.9404 3.6507 8 6 1.6859 -0.2189 4.8999 9 1 2.1205 0.7797 4.9455 10 6 2.0912 -1.0088 6.1460 11 8 1.6198 -2.3529 6.0322 12 7 0.2219 -0.1136 4.8416 13 6 -0.2564 1.0226 5.6404 14 6 -1.7592 1.0988 5.5561 15 8 -2.3715 0.2861 4.8959 16 7 -2.4231 2.0663 6.2190 17 6 -3.7902 2.1352 6.1427 18 1 -4.3351 1.4145 5.5510 19 6 -4.4749 3.1323 6.8267 20 7 -3.8120 4.0089 7.5470 21 14 -6.3376 3.2267 6.7222 22 1 -6.9362 2.4136 7.8111 23 1 -6.7704 4.6400 6.8644 24 1 -6.7869 2.7013 5.4078 25 7 2.0183 -0.6906 -1.1962 26 6 1.4402 -1.7558 -1.7896 27 6 2.1961 -2.0922 -2.8603 28 6 3.2728 -1.2016 -2.9238 29 7 3.1640 -0.3574 -1.9302 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.1494 0.5388 2.5436 34 1 3.2855 -0.9399 3.6505 35 1 1.8327 -1.9682 3.6508 36 1 3.1774 -1.0112 6.2373 37 1 1.6534 -0.5438 7.0293 38 1 1.8409 -2.9128 6.7890 39 1 -0.0980 -0.0447 3.8871 40 1 0.1760 1.9458 5.2544 41 1 0.0431 0.8880 6.6797 42 1 -1.9339 2.7134 6.7508 43 1 -4.2898 4.7053 8.0242 44 1 0.5361 -2.2511 -1.4675 45 1 2.0023 -2.9046 -3.5449 46 1 4.0563 -1.2073 -3.6670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725529159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:38 Heat of formation + Delta-G solvation = -27.567248 kcal Electronic energy + Delta-G solvation = -29292.960674 eV Core-core repulsion = 25027.148234 eV Total energy + Delta-G solvation = -4265.812440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.47901 -39.96842 -38.60907 -37.60517 -35.66104 -34.87256 -34.20318 -33.66373 -31.32252 -30.52422 -30.15252 -29.48077 -26.44028 -26.28680 -24.70989 -23.98974 -21.72382 -21.20296 -20.71089 -20.06284 -19.40056 -18.19962 -17.88331 -17.54235 -17.34756 -16.53643 -15.88473 -15.64656 -15.50293 -15.02247 -14.74130 -14.57505 -14.37986 -14.22704 -13.99338 -13.77637 -13.75432 -13.53810 -13.33016 -13.04352 -12.81870 -12.71404 -12.53242 -12.29839 -11.94186 -11.89000 -11.65757 -11.53806 -11.13990 -11.07957 -10.84373 -10.44869 -10.31510 -10.28522 -9.98238 -9.57802 -9.52505 -9.33993 -8.72701 -8.55005 -8.19526 -8.03616 -6.48678 -3.89673 1.68269 2.13144 2.28362 2.75460 2.93206 3.12923 3.22284 3.27473 3.80595 3.91159 4.11427 4.17214 4.25275 4.29725 4.45788 4.59489 4.68574 4.81626 4.85727 5.09527 5.11748 5.16772 5.20830 5.21683 5.29683 5.40224 5.49153 5.55195 5.57534 5.62952 5.69299 5.83039 5.88497 5.91953 6.09618 6.17220 6.49537 6.77019 7.03409 7.11045 7.45549 7.48698 7.56045 7.68488 7.85843 7.98713 8.53309 9.10818 9.46237 9.97260 10.68877 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011952 B = 0.002442 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.126090 B =11463.318257 C =13206.851624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.128 0.872 4 C 0.505 3.495 5 O -0.519 6.519 6 N -0.725 5.725 7 C 0.123 3.877 8 C 0.076 3.924 9 H 0.061 0.939 10 C 0.091 3.909 11 O -0.554 6.554 12 N -0.652 5.652 13 C 0.047 3.953 14 C 0.439 3.561 15 O -0.581 6.581 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 N -0.355 5.355 26 C 0.071 3.929 27 C -0.276 4.276 28 C 0.046 3.954 29 N -0.294 5.294 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.399 0.601 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.374 0.626 39 H 0.347 0.653 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.171 0.829 45 H 0.147 0.853 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.101 -5.747 -10.980 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.146 0.854 4 C 0.288 3.712 5 O -0.394 6.394 6 N -0.379 5.379 7 C 0.000 4.000 8 C -0.035 4.035 9 H 0.079 0.921 10 C 0.012 3.988 11 O -0.358 6.358 12 N -0.288 5.288 13 C -0.086 4.086 14 C 0.225 3.775 15 O -0.465 6.465 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 N -0.137 5.137 26 C -0.075 4.075 27 C -0.306 4.306 28 C -0.140 4.140 29 N -0.115 5.115 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.220 0.780 39 H 0.169 0.831 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.188 0.812 45 H 0.165 0.835 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 14.256 -6.002 -10.767 18.846 hybrid contribution -0.743 0.808 0.210 1.118 sum 13.513 -5.194 -10.557 17.917 Atomic orbital electron populations 1.22207 0.89940 1.04840 1.05226 1.21106 0.96483 0.97582 0.81152 0.85426 1.20661 0.80845 0.85126 0.84571 1.90770 1.36739 1.25506 1.86381 1.45990 1.53968 1.32276 1.05703 1.21512 0.98848 0.98098 0.81554 1.21892 0.89740 0.97495 0.94359 0.92083 1.22064 0.96180 0.83732 0.96827 1.86599 1.81455 1.21210 1.46546 1.60010 1.06915 1.44306 1.17527 1.21803 0.95727 0.91520 0.99507 1.19736 0.88141 0.84401 0.85266 1.90539 1.68882 1.41961 1.45102 1.41861 1.07569 1.27016 1.43447 1.19695 0.81551 1.13162 1.28517 0.87897 1.25269 1.00703 0.95664 0.96271 1.69608 1.36657 1.16759 1.31216 0.85854 0.82153 0.77319 0.78956 1.20355 1.20919 1.19403 1.48172 1.19867 1.24435 1.21189 1.22463 0.99791 0.90593 0.94651 1.21459 0.99266 1.06417 1.03423 1.23855 0.99104 0.93938 0.97124 1.77335 1.02359 1.24364 1.07416 0.90523 0.88826 0.89902 0.76531 0.90951 0.88935 0.93655 0.92948 0.78035 0.83115 0.93860 0.89526 0.77493 0.91825 0.81187 0.83527 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.73 37.16 0.32 -0.96 16 2 C 0.14 1.43 3.73 -69.08 -0.26 1.17 16 3 H 0.13 1.08 8.14 -51.93 -0.42 0.65 16 4 C 0.50 6.20 7.22 -10.99 -0.08 6.12 16 5 O -0.52 -8.58 16.42 5.56 0.09 -8.49 16 6 N -0.73 -7.59 4.88 -60.30 -0.29 -7.89 16 7 C 0.12 1.41 5.20 -4.04 -0.02 1.39 16 8 C 0.08 0.84 2.60 -67.71 -0.18 0.66 16 9 H 0.06 0.57 7.80 -51.93 -0.40 0.17 16 10 C 0.09 0.94 6.80 37.16 0.25 1.20 16 11 O -0.55 -6.62 12.64 -35.23 -0.45 -7.07 16 12 N -0.65 -9.57 5.87 -107.99 -0.63 -10.20 16 13 C 0.05 0.74 5.96 -4.98 -0.03 0.71 16 14 C 0.44 9.74 7.82 -10.98 -0.09 9.66 16 15 O -0.58 -15.02 15.78 5.54 0.09 -14.93 16 16 N -0.56 -13.55 5.29 -10.96 -0.06 -13.61 16 17 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 18 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -23.76 13.05 55.50 0.72 -23.03 16 21 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 N -0.35 -4.28 3.02 -55.99 -0.17 -4.45 16 26 C 0.07 0.77 10.57 -17.22 -0.18 0.58 16 27 C -0.28 -2.83 10.80 -40.01 -0.43 -3.26 16 28 C 0.05 0.51 12.03 -17.37 -0.21 0.30 16 29 N -0.29 -3.93 12.58 30.62 0.39 -3.54 16 30 H 0.08 0.62 7.16 -51.93 -0.37 0.25 16 31 H 0.09 0.67 7.57 -51.93 -0.39 0.27 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 3.46 6.79 -40.82 -0.28 3.19 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.31 7.40 -51.93 -0.38 0.92 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 38 H 0.37 2.81 9.12 45.56 0.42 3.22 16 39 H 0.35 5.15 6.41 -39.29 -0.25 4.89 16 40 H 0.04 0.58 8.06 -51.93 -0.42 0.17 16 41 H 0.09 1.28 7.36 -51.93 -0.38 0.90 16 42 H 0.39 9.01 7.90 -40.82 -0.32 8.68 16 43 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.17 1.42 7.26 -52.49 -0.38 1.04 16 45 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -37.11 391.36 -6.18 -43.29 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -5.60 Total: 18.72 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -1.14 Total: 9.86 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.05 Total: -62.73 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.27 Total: -30.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.11 -6.18 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725529159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.721 kcal (2) G-P(sol) polarization free energy of solvation -37.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds