Wall clock time and date at job start Tue Mar 31 2020 23:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46550 * 2 1 4 4 C 1.50695 * 109.47150 * 120.00194 * 2 1 3 5 5 O 1.21281 * 120.00123 * 119.99674 * 4 2 1 6 6 N 1.34779 * 120.00232 * 300.00160 * 4 2 1 7 7 C 1.46499 * 120.00187 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46851 * 179.97438 * 7 6 4 9 9 H 1.08993 * 109.47416 * 294.99799 * 8 7 6 10 10 C 1.53001 * 109.46848 * 174.99855 * 8 7 6 11 11 O 1.42897 * 109.47472 * 305.00379 * 10 8 7 12 12 N 1.46901 * 109.47245 * 55.00305 * 8 7 6 13 13 C 1.46895 * 110.99816 * 204.99659 * 12 8 7 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 12 8 15 15 O 1.21297 * 119.99667 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72734 * 14 13 12 17 17 C 1.37095 * 119.99878 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00160 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99401 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00554 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46847 * 89.99945 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00376 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00260 * 21 19 17 25 25 N 1.46502 * 109.46860 * 240.00093 * 2 1 3 26 26 C 1.34946 * 126.03953 * 325.00192 * 25 2 1 27 27 C 1.35316 * 107.74502 * 179.97438 * 26 25 2 28 28 C 1.39867 * 107.92046 * 359.97438 * 27 26 25 29 29 N 1.30839 * 108.20347 * 359.74253 * 28 27 26 30 30 H 1.09005 * 109.47051 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47235 * 299.99982 * 1 2 3 32 32 H 1.08996 * 109.47374 * 59.99693 * 1 2 3 33 33 H 0.97002 * 119.99552 * 359.97438 * 6 4 2 34 34 H 1.08997 * 109.47243 * 60.00001 * 7 6 4 35 35 H 1.08999 * 109.46836 * 299.99904 * 7 6 4 36 36 H 1.09005 * 109.46975 * 65.00179 * 10 8 7 37 37 H 1.08997 * 109.47675 * 185.00010 * 10 8 7 38 38 H 0.96703 * 114.00471 * 180.02562 * 11 10 8 39 39 H 1.00902 * 110.99849 * 328.95038 * 12 8 7 40 40 H 1.09001 * 109.47613 * 60.00104 * 13 12 8 41 41 H 1.08998 * 109.47678 * 300.00000 * 13 12 8 42 42 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 43 43 H 0.97004 * 120.00112 * 179.97438 * 20 19 17 44 44 H 1.07998 * 126.12468 * 359.97438 * 26 25 2 45 45 H 1.07996 * 126.03582 * 179.97438 * 27 26 25 46 46 H 1.07997 * 125.89916 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4546 7 6 2.1956 -0.9404 3.6507 8 6 1.6859 -0.2189 4.8999 9 1 2.1205 0.7797 4.9455 10 6 2.0912 -1.0088 6.1460 11 8 1.6198 -2.3529 6.0322 12 7 0.2219 -0.1136 4.8416 13 6 -0.2564 1.0226 5.6404 14 6 -1.7592 1.0988 5.5561 15 8 -2.3715 0.2861 4.8959 16 7 -2.4231 2.0663 6.2190 17 6 -3.7902 2.1352 6.1427 18 1 -4.3351 1.4145 5.5510 19 6 -4.4749 3.1323 6.8267 20 7 -3.8120 4.0089 7.5470 21 14 -6.3376 3.2267 6.7222 22 1 -6.9362 2.4136 7.8111 23 1 -6.7704 4.6400 6.8644 24 1 -6.7869 2.7013 5.4078 25 7 2.0183 -0.6906 -1.1962 26 6 1.4402 -1.7558 -1.7896 27 6 2.1961 -2.0922 -2.8603 28 6 3.2728 -1.2016 -2.9238 29 7 3.1640 -0.3574 -1.9302 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.1494 0.5388 2.5436 34 1 3.2855 -0.9399 3.6505 35 1 1.8327 -1.9682 3.6508 36 1 3.1774 -1.0112 6.2373 37 1 1.6534 -0.5438 7.0293 38 1 1.8409 -2.9128 6.7890 39 1 -0.0980 -0.0447 3.8871 40 1 0.1760 1.9458 5.2544 41 1 0.0431 0.8880 6.6797 42 1 -1.9339 2.7134 6.7508 43 1 -4.2898 4.7053 8.0242 44 1 0.5361 -2.2511 -1.4675 45 1 2.0023 -2.9046 -3.5449 46 1 4.0563 -1.2073 -3.6670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725529159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:36 Heat of formation + Delta-G solvation = -60.394732 kcal Electronic energy + Delta-G solvation = -29294.384181 eV Core-core repulsion = 25027.148234 eV Total energy + Delta-G solvation = -4267.235947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.30532 -40.93493 -40.15482 -38.77750 -36.62614 -35.96263 -35.71031 -34.88835 -33.24205 -31.54122 -31.00197 -30.29183 -27.92715 -27.19367 -25.80217 -25.34676 -22.60387 -22.00631 -21.64824 -21.15118 -20.86035 -19.91530 -19.01716 -18.41502 -18.20043 -17.81593 -17.01857 -16.82660 -16.65039 -16.39323 -16.04975 -15.78038 -15.58744 -15.19828 -15.12803 -15.02067 -14.67297 -14.51013 -14.39427 -14.05365 -13.81746 -13.58309 -13.52069 -13.43014 -13.30762 -13.08959 -12.91133 -12.72288 -12.65255 -12.39715 -12.11707 -12.01760 -11.68288 -11.49189 -11.28740 -10.78649 -10.39635 -10.32697 -10.29007 -9.99431 -9.54329 -9.32837 -8.45516 -5.93423 0.84973 1.30419 1.38696 1.39533 1.43312 1.54997 1.96432 2.05863 2.08455 2.29534 2.82831 3.22538 3.33690 3.43041 3.47383 3.52769 3.74404 3.76730 3.95293 4.11783 4.12016 4.29132 4.36835 4.46275 4.49372 4.52860 4.55238 4.60967 4.68243 4.69187 4.76891 4.85344 4.96785 5.02955 5.14582 5.18706 5.42855 5.72897 5.87498 5.99152 6.09239 6.25483 6.33431 6.62033 6.73911 6.94500 7.05080 7.14895 7.58902 8.14219 8.71634 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011952 B = 0.002442 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.126090 B =11463.318257 C =13206.851624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.143 0.857 4 C 0.504 3.496 5 O -0.567 6.567 6 N -0.713 5.713 7 C 0.131 3.869 8 C 0.080 3.920 9 H 0.091 0.909 10 C 0.087 3.913 11 O -0.582 6.582 12 N -0.671 5.671 13 C 0.062 3.938 14 C 0.438 3.562 15 O -0.621 6.621 16 N -0.573 5.573 17 C -0.330 4.330 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.989 3.011 22 H -0.274 1.274 23 H -0.272 1.272 24 H -0.272 1.272 25 N -0.365 5.365 26 C 0.057 3.943 27 C -0.282 4.282 28 C 0.041 3.959 29 N -0.335 5.335 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.410 0.590 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.390 0.610 39 H 0.344 0.656 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.189 0.811 45 H 0.170 0.830 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.562 -4.963 -10.953 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.161 0.839 4 C 0.289 3.711 5 O -0.445 6.445 6 N -0.367 5.367 7 C 0.007 3.993 8 C -0.030 4.030 9 H 0.108 0.892 10 C 0.008 3.992 11 O -0.389 6.389 12 N -0.307 5.307 13 C -0.070 4.070 14 C 0.226 3.774 15 O -0.508 6.508 16 N -0.210 5.210 17 C -0.460 4.460 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.813 3.187 22 H -0.200 1.200 23 H -0.197 1.197 24 H -0.197 1.197 25 N -0.148 5.148 26 C -0.089 4.089 27 C -0.311 4.311 28 C -0.145 4.145 29 N -0.155 5.155 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.248 0.752 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.239 0.761 39 H 0.165 0.835 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.231 0.769 43 H 0.086 0.914 44 H 0.206 0.794 45 H 0.187 0.813 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 14.732 -5.188 -10.704 18.935 hybrid contribution -0.832 0.482 0.188 0.980 sum 13.900 -4.706 -10.516 18.054 Atomic orbital electron populations 1.22203 0.88317 1.04880 1.06170 1.21253 0.97564 0.97702 0.79642 0.83937 1.21103 0.79963 0.84482 0.85512 1.90743 1.39032 1.27676 1.87069 1.45904 1.53419 1.32221 1.05130 1.21364 0.99075 0.96765 0.82080 1.22016 0.87503 0.99034 0.94451 0.89178 1.22211 0.97885 0.82939 0.96185 1.86557 1.82050 1.22297 1.48008 1.59987 1.09373 1.44051 1.17262 1.21660 0.90684 0.93612 1.01031 1.20855 0.90819 0.82593 0.83139 1.90513 1.70708 1.43155 1.46388 1.41920 1.06878 1.27932 1.44292 1.19625 0.83168 1.13625 1.29560 0.90377 1.25980 1.04612 0.95011 0.95602 1.69661 1.38062 1.16972 1.31366 0.84977 0.77279 0.77751 0.78662 1.19964 1.19651 1.19698 1.48356 1.19824 1.24992 1.21596 1.22944 1.00555 0.90494 0.94888 1.21844 0.98842 1.06800 1.03623 1.24431 0.99778 0.93324 0.96955 1.77262 1.03575 1.25998 1.08711 0.90942 0.88018 0.88737 0.75247 0.90274 0.91873 0.90790 0.92888 0.76149 0.83533 0.90490 0.87891 0.76946 0.91377 0.79435 0.81253 0.77390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.73 71.98 0.63 -1.68 16 2 C 0.14 2.79 3.73 44.24 0.17 2.96 16 3 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.50 12.25 7.22 87.66 0.63 12.88 16 5 O -0.57 -19.02 16.42 -3.03 -0.05 -19.07 16 6 N -0.71 -14.21 4.88 -463.07 -2.26 -16.47 16 7 C 0.13 2.86 5.20 86.38 0.45 3.31 16 8 C 0.08 1.58 2.60 44.92 0.12 1.69 16 9 H 0.09 1.32 7.80 -2.39 -0.02 1.30 16 10 C 0.09 1.59 6.80 71.98 0.49 2.08 16 11 O -0.58 -13.29 12.64 -148.98 -1.88 -15.17 16 12 N -0.67 -18.56 5.87 -495.58 -2.91 -21.47 16 13 C 0.06 1.83 5.96 85.56 0.51 2.34 16 14 C 0.44 19.24 7.82 87.66 0.69 19.93 16 15 O -0.62 -32.47 15.78 -3.08 -0.05 -32.52 16 16 N -0.57 -27.58 5.29 -306.98 -1.62 -29.21 16 17 C -0.33 -17.98 9.68 84.04 0.81 -17.16 16 18 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 20 N -0.92 -47.85 13.05 21.66 0.28 -47.57 16 21 Si 0.99 41.65 29.55 68.60 2.03 43.68 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 N -0.37 -8.69 3.02 -331.06 -1.00 -9.69 16 26 C 0.06 1.20 10.57 83.54 0.88 2.08 16 27 C -0.28 -5.50 10.80 21.99 0.24 -5.27 16 28 C 0.04 0.87 12.03 85.24 1.02 1.89 16 29 N -0.33 -8.84 12.58 -57.03 -0.72 -9.56 16 30 H 0.07 1.13 7.16 -2.38 -0.02 1.11 16 31 H 0.10 1.32 7.57 -2.38 -0.02 1.30 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.41 6.43 6.79 -92.71 -0.63 5.81 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.79 7.40 -2.39 -0.02 1.78 16 36 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.05 0.97 7.35 -2.39 -0.02 0.95 16 38 H 0.39 5.46 9.12 -74.06 -0.68 4.79 16 39 H 0.34 9.78 6.41 -89.69 -0.58 9.20 16 40 H 0.08 1.79 8.06 -2.39 -0.02 1.77 16 41 H 0.10 2.75 7.36 -2.39 -0.02 2.74 16 42 H 0.40 18.03 7.90 -92.71 -0.73 17.30 16 43 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 44 H 0.19 3.03 7.26 -2.91 -0.02 3.01 16 45 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.21 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -81.67 391.36 -2.63 -84.30 By element: Atomic # 1 Polarization: 49.44 SS G_CDS: -1.55 Total: 47.88 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 7.10 Total: 24.88 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -8.23 Total: -133.96 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -1.98 Total: -66.77 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -81.67 -2.63 -84.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725529159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.903 kcal (2) G-P(sol) polarization free energy of solvation -81.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds