Wall clock time and date at job start Tue Mar 31 2020 23:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47090 * 2 1 4 4 N 1.46495 * 109.47149 * 120.00264 * 2 1 3 5 5 C 1.36933 * 120.00033 * 274.99956 * 4 2 1 6 6 H 1.08000 * 119.99888 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99873 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99870 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99894 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47137 * 90.00144 * 9 7 5 11 11 H 1.48501 * 109.47157 * 210.00342 * 9 7 5 12 12 H 1.48500 * 109.47335 * 330.00057 * 9 7 5 13 13 C 1.53001 * 109.47243 * 240.00478 * 2 1 3 14 14 H 1.08997 * 109.47355 * 300.00095 * 13 2 1 15 15 C 1.52993 * 109.47414 * 179.97438 * 13 2 1 16 16 N 1.46505 * 109.47193 * 59.99740 * 13 2 1 17 17 C 1.34772 * 120.00253 * 205.00262 * 16 13 2 18 18 O 1.21571 * 119.99724 * 359.97438 * 17 16 13 19 19 C 1.47689 * 120.00271 * 180.02562 * 17 16 13 20 20 C 1.39462 * 120.20463 * 353.73311 * 19 17 16 21 21 C 1.37978 * 119.96910 * 179.74776 * 20 19 17 22 22 C 1.38490 * 120.39803 * 0.56069 * 21 20 19 23 23 C 1.38074 * 120.42087 * 359.69384 * 22 21 20 24 24 C 1.39179 * 120.01486 * 0.02677 * 23 22 21 25 25 C 1.48233 * 120.19278 * 179.97438 * 24 23 22 26 26 C 1.39835 * 120.90795 * 119.56018 * 25 24 23 27 27 C 1.37993 * 119.00573 * 179.73055 * 26 25 24 28 28 N 1.31910 * 120.89105 * 0.55018 * 27 26 25 29 29 C 1.31907 * 122.02688 * 359.72317 * 28 27 26 30 30 C 1.37996 * 120.88652 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47023 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47228 * 299.99801 * 1 2 3 33 33 H 1.09003 * 109.47478 * 59.99940 * 1 2 3 34 34 H 0.96998 * 119.99645 * 94.72842 * 4 2 1 35 35 H 0.97005 * 119.99556 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47163 * 59.99669 * 15 13 2 37 37 H 1.08998 * 109.47399 * 179.97438 * 15 13 2 38 38 H 1.08997 * 109.47166 * 300.00492 * 15 13 2 39 39 H 0.97001 * 120.00072 * 25.00276 * 16 13 2 40 40 H 1.07997 * 120.02028 * 0.02562 * 20 19 17 41 41 H 1.08005 * 119.80223 * 180.28028 * 21 20 19 42 42 H 1.08000 * 119.79202 * 179.72095 * 22 21 20 43 43 H 1.08003 * 119.99444 * 179.97438 * 23 22 21 44 44 H 1.07993 * 120.49711 * 359.97438 * 26 25 24 45 45 H 1.08003 * 119.55330 * 180.24984 * 27 26 25 46 46 H 1.07999 * 119.55792 * 179.97438 * 29 28 27 47 47 H 1.08008 * 120.49480 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8919 1.0402 2.4243 7 6 2.6113 -0.6622 3.5092 8 7 2.9243 -1.9392 3.4499 9 14 2.7891 0.2694 5.1185 10 1 1.5211 0.1781 5.8859 11 1 3.8934 -0.3239 5.9146 12 1 3.0941 1.6947 4.8343 13 6 2.0400 -0.7211 -1.2493 14 1 1.6767 -1.7488 -1.2494 15 6 3.5699 -0.7206 -1.2497 16 7 1.5516 -0.0305 -2.4455 17 6 1.4229 -0.7027 -3.6064 18 8 1.7125 -1.8821 -3.6612 19 6 0.9311 -0.0063 -4.8124 20 6 0.4757 1.3091 -4.7264 21 6 0.0222 1.9568 -5.8571 22 6 0.0049 1.3047 -7.0788 23 6 0.4470 0.0007 -7.1816 24 6 0.9135 -0.6672 -6.0533 25 6 1.3887 -2.0674 -6.1591 26 6 2.7040 -2.4066 -5.8271 27 6 3.1030 -3.7231 -5.9348 28 7 2.2659 -4.6524 -6.3541 29 6 1.0191 -4.3740 -6.6825 30 6 0.5355 -3.0842 -6.5985 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2452 -1.6327 1.1534 35 1 3.2477 -2.3965 4.2420 36 1 3.9337 -1.2342 -0.3597 37 1 3.9333 -1.2348 -2.1394 38 1 3.9329 0.3072 -1.2497 39 1 1.3209 0.9107 -2.4019 40 1 0.4822 1.8220 -3.7760 41 1 -0.3257 2.9769 -5.7882 42 1 -0.3564 1.8196 -7.9568 43 1 0.4301 -0.5013 -8.1377 44 1 3.3960 -1.6502 -5.4877 45 1 4.1158 -3.9956 -5.6768 46 1 0.3679 -5.1661 -7.0215 47 1 -0.4865 -2.8634 -6.8694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733978160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:10 Heat of formation + Delta-G solvation = 41.596644 kcal Electronic energy + Delta-G solvation = -28969.994157 eV Core-core repulsion = 25118.030151 eV Total energy + Delta-G solvation = -3851.964006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.82653 -39.56834 -38.55399 -36.71237 -34.23615 -33.46944 -32.24582 -31.32416 -31.05422 -30.02840 -29.26257 -28.40969 -24.77552 -24.02223 -23.92576 -23.32888 -22.60058 -21.52694 -20.34746 -20.04789 -18.18862 -17.37376 -17.12089 -16.28151 -15.95057 -15.82014 -15.39669 -15.08187 -14.96084 -14.76185 -14.52401 -13.88604 -13.66588 -13.62443 -13.57432 -13.47007 -13.31311 -13.08575 -12.83688 -12.45841 -12.09445 -11.88529 -11.73111 -11.72146 -11.58037 -11.21164 -10.98029 -10.86907 -10.72039 -10.34743 -10.24501 -9.92118 -9.74558 -9.52763 -9.43677 -9.36181 -9.12294 -9.00908 -8.77664 -8.73384 -7.02265 -5.80263 -3.10192 0.45068 0.80641 1.23118 1.43528 2.78914 3.20349 3.40846 3.46117 3.47811 3.58841 3.86553 4.18542 4.46690 4.49124 4.51181 4.57115 4.65048 4.88017 4.99347 5.02605 5.08774 5.21605 5.25047 5.35896 5.46156 5.49875 5.59605 5.64696 5.72152 5.78361 5.84564 5.86123 5.95391 6.00749 6.06064 6.06818 6.17528 6.27111 6.35517 6.38756 6.46643 6.48472 6.58463 6.72226 6.77496 6.91002 6.99132 7.62044 7.65350 8.03302 8.29978 8.37290 9.48581 10.03578 10.38616 11.42015 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002791 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.909367 B =10030.146118 C =11438.347600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.050 0.950 4 N -0.718 5.718 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.137 3.863 14 H 0.086 0.914 15 C -0.151 4.151 16 N -0.710 5.710 17 C 0.548 3.452 18 O -0.522 6.522 19 C -0.114 4.114 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.097 4.097 23 C -0.112 4.112 24 C 0.000 4.000 25 C 0.006 3.994 26 C -0.105 4.105 27 C 0.095 3.905 28 N -0.485 5.485 29 C 0.092 3.908 30 C -0.160 4.160 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.395 0.605 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 6.549 -25.105 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.068 0.932 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.033 3.967 14 H 0.104 0.896 15 C -0.209 4.209 16 N -0.361 5.361 17 C 0.334 3.666 18 O -0.399 6.399 19 C -0.118 4.118 20 C -0.104 4.104 21 C -0.140 4.140 22 C -0.115 4.115 23 C -0.130 4.130 24 C -0.002 4.002 25 C -0.002 4.002 26 C -0.125 4.125 27 C -0.060 4.060 28 N -0.194 5.194 29 C -0.065 4.065 30 C -0.180 4.180 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.230 0.770 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.170 0.830 46 H 0.169 0.831 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.914 4.940 -25.005 25.958 hybrid contribution -0.418 1.652 1.244 2.110 sum -5.332 6.592 -23.761 25.228 Atomic orbital electron populations 1.22455 0.99104 1.01140 0.99765 1.20383 0.92064 0.95545 0.86180 0.93205 1.42285 1.78262 1.10605 1.04811 1.19177 1.36973 0.93867 0.87103 0.91175 1.24744 1.01978 0.95964 0.98045 1.69665 1.50528 1.08635 1.28947 0.86202 0.77311 0.78761 0.83951 1.21746 1.21762 1.20778 1.21361 0.94473 0.97595 0.83311 0.89611 1.22037 0.94805 1.01723 1.02370 1.46040 1.66519 1.13829 1.09721 1.18161 0.78481 0.86832 0.83082 1.90856 1.49692 1.15065 1.84303 1.20114 1.03340 0.94759 0.93559 1.21339 0.96655 0.93154 0.99265 1.21195 0.99958 1.00400 0.92405 1.21278 0.97829 0.94416 0.97976 1.21194 0.99077 0.94940 0.97758 1.18723 0.96779 0.92361 0.92291 1.18823 0.93747 0.91760 0.95894 1.21917 0.95490 0.97989 0.97089 1.22529 0.99215 0.88707 0.95581 1.67555 1.04095 1.37157 1.10627 1.22525 0.92284 0.95002 0.96737 1.22043 1.00255 0.93768 1.01941 0.93407 0.92605 0.94702 0.78027 0.93414 0.90056 0.93462 0.93116 0.77013 0.85095 0.85153 0.85258 0.85149 0.85673 0.83048 0.83084 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.33 37.16 0.35 -2.52 16 2 C 0.17 3.16 2.52 -67.93 -0.17 2.99 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -17.25 4.42 -53.43 -0.24 -17.49 16 5 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 9 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.14 2.30 2.21 -67.93 -0.15 2.15 16 14 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 15 C -0.15 -2.56 9.33 37.15 0.35 -2.22 16 16 N -0.71 -9.51 4.33 -54.80 -0.24 -9.75 16 17 C 0.55 7.77 7.56 -12.40 -0.09 7.68 16 18 O -0.52 -9.01 12.15 5.30 0.06 -8.94 16 19 C -0.11 -1.31 5.89 -104.69 -0.62 -1.92 16 20 C -0.09 -0.74 9.52 -39.22 -0.37 -1.12 16 21 C -0.12 -0.85 10.02 -39.58 -0.40 -1.25 16 22 C -0.10 -0.65 10.03 -39.55 -0.40 -1.05 16 23 C -0.11 -0.92 9.69 -39.29 -0.38 -1.30 16 24 C 0.00 -0.01 5.44 -104.55 -0.57 -0.57 16 25 C 0.01 0.08 4.08 -104.60 -0.43 -0.35 16 26 C -0.10 -1.36 7.08 -39.07 -0.28 -1.64 16 27 C 0.10 1.26 11.17 -17.61 -0.20 1.06 16 28 N -0.49 -6.75 10.34 -13.34 -0.14 -6.89 16 29 C 0.09 1.09 11.17 -17.61 -0.20 0.89 16 30 C -0.16 -1.81 9.81 -39.08 -0.38 -2.20 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 34 H 0.39 10.05 7.60 -40.82 -0.31 9.74 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.08 1.59 7.45 -51.93 -0.39 1.20 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.39 4.27 6.46 -40.82 -0.26 4.01 16 40 H 0.13 0.91 6.45 -52.49 -0.34 0.57 16 41 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.13 1.56 8.01 -52.49 -0.42 1.14 16 45 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 46 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -32.87 391.57 -9.82 -42.69 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.69 Total: 12.80 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -4.18 Total: -8.34 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.11 Total: -61.08 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.06 Total: -8.94 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.87 -9.82 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733978160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.284 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds