Wall clock time and date at job start Tue Mar 31 2020 23:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47090 * 2 1 4 4 N 1.46495 * 109.47149 * 120.00264 * 2 1 3 5 5 C 1.36933 * 120.00033 * 274.99956 * 4 2 1 6 6 H 1.08000 * 119.99888 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99873 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99870 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99894 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47137 * 90.00144 * 9 7 5 11 11 H 1.48501 * 109.47157 * 210.00342 * 9 7 5 12 12 H 1.48500 * 109.47335 * 330.00057 * 9 7 5 13 13 C 1.53001 * 109.47243 * 240.00478 * 2 1 3 14 14 H 1.08997 * 109.47355 * 300.00095 * 13 2 1 15 15 C 1.52993 * 109.47414 * 179.97438 * 13 2 1 16 16 N 1.46505 * 109.47193 * 59.99740 * 13 2 1 17 17 C 1.34772 * 120.00253 * 205.00262 * 16 13 2 18 18 O 1.21571 * 119.99724 * 359.97438 * 17 16 13 19 19 C 1.47689 * 120.00271 * 180.02562 * 17 16 13 20 20 C 1.39462 * 120.20463 * 353.73311 * 19 17 16 21 21 C 1.37978 * 119.96910 * 179.74776 * 20 19 17 22 22 C 1.38490 * 120.39803 * 0.56069 * 21 20 19 23 23 C 1.38074 * 120.42087 * 359.69384 * 22 21 20 24 24 C 1.39179 * 120.01486 * 0.02677 * 23 22 21 25 25 C 1.48233 * 120.19278 * 179.97438 * 24 23 22 26 26 C 1.39835 * 120.90795 * 119.56018 * 25 24 23 27 27 C 1.37993 * 119.00573 * 179.73055 * 26 25 24 28 28 N 1.31910 * 120.89105 * 0.55018 * 27 26 25 29 29 C 1.31907 * 122.02688 * 359.72317 * 28 27 26 30 30 C 1.37996 * 120.88652 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47023 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47228 * 299.99801 * 1 2 3 33 33 H 1.09003 * 109.47478 * 59.99940 * 1 2 3 34 34 H 0.96998 * 119.99645 * 94.72842 * 4 2 1 35 35 H 0.97005 * 119.99556 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47163 * 59.99669 * 15 13 2 37 37 H 1.08998 * 109.47399 * 179.97438 * 15 13 2 38 38 H 1.08997 * 109.47166 * 300.00492 * 15 13 2 39 39 H 0.97001 * 120.00072 * 25.00276 * 16 13 2 40 40 H 1.07997 * 120.02028 * 0.02562 * 20 19 17 41 41 H 1.08005 * 119.80223 * 180.28028 * 21 20 19 42 42 H 1.08000 * 119.79202 * 179.72095 * 22 21 20 43 43 H 1.08003 * 119.99444 * 179.97438 * 23 22 21 44 44 H 1.07993 * 120.49711 * 359.97438 * 26 25 24 45 45 H 1.08003 * 119.55330 * 180.24984 * 27 26 25 46 46 H 1.07999 * 119.55792 * 179.97438 * 29 28 27 47 47 H 1.08008 * 120.49480 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8919 1.0402 2.4243 7 6 2.6113 -0.6622 3.5092 8 7 2.9243 -1.9392 3.4499 9 14 2.7891 0.2694 5.1185 10 1 1.5211 0.1781 5.8859 11 1 3.8934 -0.3239 5.9146 12 1 3.0941 1.6947 4.8343 13 6 2.0400 -0.7211 -1.2493 14 1 1.6767 -1.7488 -1.2494 15 6 3.5699 -0.7206 -1.2497 16 7 1.5516 -0.0305 -2.4455 17 6 1.4229 -0.7027 -3.6064 18 8 1.7125 -1.8821 -3.6612 19 6 0.9311 -0.0063 -4.8124 20 6 0.4757 1.3091 -4.7264 21 6 0.0222 1.9568 -5.8571 22 6 0.0049 1.3047 -7.0788 23 6 0.4470 0.0007 -7.1816 24 6 0.9135 -0.6672 -6.0533 25 6 1.3887 -2.0674 -6.1591 26 6 2.7040 -2.4066 -5.8271 27 6 3.1030 -3.7231 -5.9348 28 7 2.2659 -4.6524 -6.3541 29 6 1.0191 -4.3740 -6.6825 30 6 0.5355 -3.0842 -6.5985 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2452 -1.6327 1.1534 35 1 3.2477 -2.3965 4.2420 36 1 3.9337 -1.2342 -0.3597 37 1 3.9333 -1.2348 -2.1394 38 1 3.9329 0.3072 -1.2497 39 1 1.3209 0.9107 -2.4019 40 1 0.4822 1.8220 -3.7760 41 1 -0.3257 2.9769 -5.7882 42 1 -0.3564 1.8196 -7.9568 43 1 0.4301 -0.5013 -8.1377 44 1 3.3960 -1.6502 -5.4877 45 1 4.1158 -3.9956 -5.6768 46 1 0.3679 -5.1661 -7.0215 47 1 -0.4865 -2.8634 -6.8694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733978160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:09 Heat of formation + Delta-G solvation = 21.797391 kcal Electronic energy + Delta-G solvation = -28970.852717 eV Core-core repulsion = 25118.030151 eV Total energy + Delta-G solvation = -3852.822566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.73718 -40.58869 -39.42200 -38.14227 -35.71630 -34.45642 -33.67464 -32.43957 -32.05268 -30.82480 -30.49674 -30.15437 -25.93504 -25.70369 -24.72811 -24.37443 -23.78013 -22.41597 -21.53623 -21.32436 -19.45777 -18.93855 -18.00179 -17.28877 -17.05581 -16.72282 -16.58308 -16.28428 -15.93079 -15.77458 -15.74132 -15.28463 -15.13566 -14.79930 -14.69460 -14.48348 -14.35307 -14.17364 -14.09592 -13.63664 -13.43419 -13.18589 -12.93053 -12.76296 -12.72613 -12.61753 -12.55652 -12.27669 -12.20180 -12.14957 -11.74867 -11.49266 -11.32282 -10.99283 -10.46747 -10.35919 -10.22642 -9.94824 -9.85777 -9.59855 -9.02585 -7.92488 -5.21803 -0.30774 0.14036 0.30893 0.61107 1.48545 1.49849 1.58059 1.90278 2.07889 2.59024 2.81454 2.94611 3.41731 3.42480 3.63006 3.63821 3.78917 3.88808 4.00442 4.03022 4.13026 4.19319 4.21375 4.29777 4.33359 4.42567 4.46305 4.56559 4.65442 4.73419 4.76631 4.86125 4.89383 4.89653 4.94089 5.02971 5.12238 5.15590 5.21487 5.29052 5.34501 5.45813 5.47363 5.48469 5.50068 5.58255 5.82427 5.89645 6.27976 6.56256 7.08937 7.23947 7.34372 8.07514 8.30837 9.31061 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002791 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.909367 B =10030.146118 C =11438.347600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.168 3.832 3 H 0.063 0.937 4 N -0.731 5.731 5 C -0.233 4.233 6 H 0.082 0.918 7 C -0.077 4.077 8 N -0.971 5.971 9 Si 0.971 3.029 10 H -0.290 1.290 11 H -0.300 1.300 12 H -0.265 1.265 13 C 0.155 3.845 14 H 0.056 0.944 15 C -0.141 4.141 16 N -0.699 5.699 17 C 0.546 3.454 18 O -0.560 6.560 19 C -0.137 4.137 20 C -0.086 4.086 21 C -0.116 4.116 22 C -0.085 4.085 23 C -0.112 4.112 24 C -0.020 4.020 25 C 0.001 3.999 26 C -0.118 4.118 27 C 0.077 3.923 28 N -0.513 5.513 29 C 0.082 3.918 30 C -0.163 4.163 31 H 0.029 0.971 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.371 0.629 35 H 0.249 0.751 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.411 0.589 40 H 0.148 0.852 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.146 0.854 44 H 0.121 0.879 45 H 0.160 0.840 46 H 0.178 0.822 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 10.025 -27.136 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.081 0.919 4 N -0.371 5.371 5 C -0.364 4.364 6 H 0.100 0.900 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.800 3.200 10 H -0.218 1.218 11 H -0.227 1.227 12 H -0.190 1.190 13 C 0.049 3.951 14 H 0.074 0.926 15 C -0.199 4.199 16 N -0.352 5.352 17 C 0.335 3.665 18 O -0.440 6.440 19 C -0.140 4.140 20 C -0.104 4.104 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.130 4.130 24 C -0.021 4.021 25 C -0.008 4.008 26 C -0.138 4.138 27 C -0.078 4.078 28 N -0.223 5.223 29 C -0.075 4.075 30 C -0.182 4.182 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.202 0.798 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.249 0.751 40 H 0.165 0.835 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.164 0.836 44 H 0.139 0.861 45 H 0.177 0.823 46 H 0.195 0.805 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.863 8.494 -27.080 29.199 hybrid contribution 0.103 0.650 1.710 1.832 sum -6.761 9.144 -25.370 27.802 Atomic orbital electron populations 1.22302 0.97588 1.00397 1.01119 1.20561 0.92879 0.95645 0.84979 0.91886 1.42479 1.78535 1.10112 1.05972 1.19595 1.34695 0.94303 0.87839 0.90048 1.25544 1.03069 0.96803 1.01453 1.69836 1.52671 1.10354 1.29326 0.85172 0.76637 0.78230 0.79914 1.21753 1.22713 1.19013 1.20855 0.94051 0.96146 0.84051 0.92609 1.21904 0.95087 1.02082 1.00855 1.45767 1.66476 1.14401 1.08526 1.18692 0.77561 0.86498 0.83790 1.90845 1.51304 1.16910 1.84913 1.19919 1.05828 0.96080 0.92217 1.21575 0.95995 0.91935 1.00916 1.21604 0.98478 1.01628 0.91655 1.21721 0.95787 0.93575 0.99191 1.21424 0.98466 0.95717 0.97413 1.18814 0.98170 0.91850 0.93233 1.19124 0.93435 0.93168 0.95059 1.21953 0.96270 0.97758 0.97820 1.22740 0.99828 0.89090 0.96145 1.67563 1.05201 1.37695 1.11815 1.23037 0.92005 0.96257 0.96178 1.22344 1.01240 0.93289 1.01363 0.95219 0.93662 0.90812 0.79752 0.94206 0.93140 0.93363 0.91690 0.75127 0.83459 0.81985 0.81900 0.83603 0.86134 0.82326 0.80538 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.33 71.98 0.67 -4.51 16 2 C 0.17 6.20 2.52 44.99 0.11 6.31 16 3 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 4 N -0.73 -35.70 4.42 -322.95 -1.43 -37.13 16 5 C -0.23 -12.43 9.93 84.03 0.83 -11.60 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 7 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 8 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 9 Si 0.97 45.55 29.55 68.60 2.03 47.57 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 C 0.15 5.23 2.21 44.99 0.10 5.33 16 14 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 15 C -0.14 -4.89 9.33 71.98 0.67 -4.22 16 16 N -0.70 -17.96 4.33 -445.57 -1.93 -19.89 16 17 C 0.55 15.28 7.56 86.74 0.66 15.94 16 18 O -0.56 -19.96 12.15 -3.94 -0.05 -20.00 16 19 C -0.14 -2.91 5.89 -19.91 -0.12 -3.02 16 20 C -0.09 -1.19 9.52 22.50 0.21 -0.98 16 21 C -0.12 -1.06 10.02 22.27 0.22 -0.83 16 22 C -0.08 -0.74 10.03 22.29 0.22 -0.52 16 23 C -0.11 -1.50 9.69 22.46 0.22 -1.28 16 24 C -0.02 -0.40 5.44 -19.82 -0.11 -0.51 16 25 C 0.00 0.01 4.08 -19.85 -0.08 -0.07 16 26 C -0.12 -3.21 7.08 22.60 0.16 -3.05 16 27 C 0.08 2.16 11.17 84.62 0.95 3.11 16 28 N -0.51 -14.79 10.34 -196.12 -2.03 -16.82 16 29 C 0.08 1.95 11.17 84.62 0.95 2.89 16 30 C -0.16 -3.58 9.81 22.60 0.22 -3.36 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.88 7.45 -2.39 -0.02 1.86 16 34 H 0.37 20.17 7.60 -92.71 -0.70 19.46 16 35 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 36 H 0.05 2.06 7.45 -2.39 -0.02 2.04 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.41 7.80 6.46 -92.71 -0.60 7.21 16 40 H 0.15 1.45 6.45 -2.91 -0.02 1.43 16 41 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 42 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16 43 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.12 3.22 8.01 -2.91 -0.02 3.20 16 45 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 46 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 47 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -74.42 391.57 2.92 -71.50 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.31 Total: 38.30 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.36 Total: -4.23 kcal Atomic # 7 Polarization: -128.04 SS G_CDS: -5.10 Total: -133.14 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.05 Total: -20.00 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.42 2.92 -71.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733978160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.296 kcal (2) G-P(sol) polarization free energy of solvation -74.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds