Wall clock time and date at job start Tue Mar 31 2020 23:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47666 * 2 1 4 4 N 1.46507 * 109.46738 * 119.99597 * 2 1 3 5 5 C 1.34786 * 119.99607 * 274.99584 * 4 2 1 6 6 O 1.21565 * 120.00084 * 0.02562 * 5 4 2 7 7 C 1.47686 * 119.99568 * 180.02562 * 5 4 2 8 8 C 1.39472 * 120.21194 * 353.77443 * 7 5 4 9 9 C 1.37969 * 119.97581 * 180.02562 * 8 7 5 10 10 C 1.38496 * 120.39530 * 0.02562 * 9 8 7 11 11 C 1.38077 * 120.41900 * 0.02562 * 10 9 8 12 12 C 1.39174 * 120.01957 * 359.71741 * 11 10 9 13 13 C 1.48226 * 120.19835 * 180.29748 * 12 11 10 14 14 C 1.39834 * 120.90968 * 119.92088 * 13 12 11 15 15 C 1.37994 * 119.00714 * 179.79788 * 14 13 12 16 16 N 1.31906 * 120.89326 * 0.49700 * 15 14 13 17 17 C 1.31916 * 122.02338 * 359.72935 * 16 15 14 18 18 C 1.37994 * 120.88730 * 0.03148 * 17 16 15 19 19 C 1.52998 * 109.47293 * 239.98900 * 2 1 3 20 20 H 1.08996 * 109.47196 * 300.00597 * 19 2 1 21 21 C 1.52999 * 109.47293 * 180.02562 * 19 2 1 22 22 N 1.46507 * 109.46659 * 60.00649 * 19 2 1 23 23 C 1.36940 * 119.99766 * 204.72556 * 22 19 2 24 24 H 1.08006 * 119.99775 * 0.27043 * 23 22 19 25 25 C 1.38806 * 119.99885 * 180.27898 * 23 22 19 26 26 N 1.31623 * 119.99949 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00042 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47382 * 59.99272 * 27 25 23 29 29 H 1.48496 * 109.47372 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.46704 * 299.99259 * 27 25 23 31 31 H 1.08996 * 109.47488 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47274 * 300.00863 * 1 2 3 33 33 H 1.09008 * 109.46793 * 60.00314 * 1 2 3 34 34 H 0.96999 * 120.00422 * 94.99825 * 4 2 1 35 35 H 1.08005 * 120.00763 * 0.02562 * 8 7 5 36 36 H 1.07996 * 119.80869 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.78836 * 180.02562 * 10 9 8 38 38 H 1.08003 * 119.98708 * 180.02562 * 11 10 9 39 39 H 1.07993 * 120.49417 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.55425 * 180.22737 * 15 14 13 41 41 H 1.08001 * 119.55738 * 180.02562 * 17 16 15 42 42 H 1.08005 * 120.49180 * 179.97438 * 18 17 16 43 43 H 1.09008 * 109.46793 * 60.00786 * 21 19 2 44 44 H 1.08997 * 109.47300 * 179.97438 * 21 19 2 45 45 H 1.08994 * 109.47404 * 300.00957 * 21 19 2 46 46 H 0.96998 * 119.99903 * 24.99542 * 22 19 2 47 47 H 0.96999 * 119.99695 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8575 1.1614 2.4118 7 6 2.6397 -0.7140 3.5630 8 6 2.8497 -2.0926 3.5410 9 6 3.3097 -2.7380 4.6704 10 6 3.5648 -2.0249 5.8300 11 6 3.3615 -0.6598 5.8703 12 6 2.9031 0.0096 4.7395 13 6 2.6898 1.4759 4.7763 14 6 3.3900 2.3255 3.9141 15 6 3.1577 3.6842 3.9791 16 7 2.2973 4.1836 4.8452 17 6 1.6199 3.4180 5.6790 18 6 1.7875 2.0482 5.6781 19 6 2.0400 -0.7215 -1.2491 20 1 1.6766 -1.7491 -1.2490 21 6 3.5700 -0.7220 -1.2488 22 7 1.5518 -0.0309 -2.4454 23 6 1.4263 -0.7128 -3.6263 24 1 1.6832 -1.7608 -3.6746 25 6 0.9692 -0.0571 -4.7611 26 7 0.6559 1.2199 -4.7020 27 14 0.7974 -0.9875 -6.3719 28 1 -0.1593 -2.1094 -6.1959 29 1 0.2933 -0.0680 -7.4233 30 1 2.1213 -1.5247 -6.7768 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2489 -1.6317 1.1529 35 1 2.6524 -2.6548 2.6402 36 1 3.4710 -3.8056 4.6505 37 1 3.9250 -2.5400 6.7083 38 1 3.5631 -0.1106 6.7781 39 1 4.0991 1.9240 3.2055 40 1 3.6909 4.3482 3.3148 41 1 0.9249 3.8692 6.3717 42 1 1.2298 1.4275 6.3639 43 1 3.9329 -1.2361 -0.3587 44 1 3.9334 -1.2364 -2.1384 45 1 3.9338 0.3054 -1.2485 46 1 1.3211 0.9102 -2.4019 47 1 0.3361 1.6780 -5.4950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733978161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:13 Heat of formation + Delta-G solvation = 41.630933 kcal Electronic energy + Delta-G solvation = -28976.321040 eV Core-core repulsion = 25124.358522 eV Total energy + Delta-G solvation = -3851.962519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.82534 -39.56634 -38.55341 -36.71228 -34.23570 -33.46766 -32.24593 -31.32436 -31.04432 -30.02569 -29.26296 -28.40795 -24.77024 -24.02130 -23.92465 -23.33667 -22.59209 -21.52086 -20.34925 -20.04373 -18.18934 -17.36987 -17.12023 -16.25612 -15.95866 -15.85648 -15.35723 -15.09808 -14.99182 -14.76134 -14.47729 -13.87025 -13.69852 -13.64615 -13.51484 -13.46108 -13.33954 -13.07801 -12.83965 -12.45454 -12.09957 -11.87792 -11.74863 -11.69437 -11.57802 -11.21448 -10.98355 -10.85150 -10.72442 -10.33516 -10.27008 -9.92366 -9.73931 -9.52273 -9.43710 -9.37220 -9.12672 -9.00456 -8.81521 -8.68601 -7.02215 -5.80009 -3.10037 0.44886 0.80734 1.23438 1.43985 2.78860 3.20280 3.41253 3.46126 3.47172 3.58814 3.86980 4.18656 4.46589 4.49311 4.51426 4.57251 4.64985 4.88222 4.99372 5.02790 5.09065 5.22075 5.25063 5.35999 5.46257 5.50044 5.60139 5.64758 5.72222 5.78926 5.84654 5.86228 5.95382 6.00866 6.06218 6.06917 6.18040 6.27715 6.35719 6.38709 6.46752 6.48802 6.58717 6.72682 6.77955 6.91123 6.98926 7.61983 7.64933 8.03646 8.29898 8.37593 9.48770 10.03697 10.38745 11.42214 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.002797 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.732870 B =10007.893004 C =11377.637358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 H 0.086 0.914 4 N -0.710 5.710 5 C 0.548 3.452 6 O -0.522 6.522 7 C -0.114 4.114 8 C -0.085 4.085 9 C -0.122 4.122 10 C -0.097 4.097 11 C -0.111 4.111 12 C 0.000 4.000 13 C 0.006 3.994 14 C -0.105 4.105 15 C 0.096 3.904 16 N -0.485 5.485 17 C 0.091 3.909 18 C -0.160 4.160 19 C 0.169 3.831 20 H 0.049 0.951 21 C -0.164 4.164 22 N -0.717 5.717 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.010 4.010 26 N -0.930 5.930 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.395 0.605 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.034 0.966 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.386 0.614 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -6.276 24.832 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.104 0.896 4 N -0.361 5.361 5 C 0.335 3.665 6 O -0.399 6.399 7 C -0.118 4.118 8 C -0.104 4.104 9 C -0.140 4.140 10 C -0.115 4.115 11 C -0.130 4.130 12 C -0.001 4.001 13 C -0.002 4.002 14 C -0.125 4.125 15 C -0.060 4.060 16 N -0.194 5.194 17 C -0.066 4.066 18 C -0.180 4.180 19 C 0.058 3.942 20 H 0.067 0.933 21 C -0.224 4.224 22 N -0.360 5.360 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.207 4.207 26 N -0.578 5.578 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.230 0.770 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.147 0.853 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.220 0.780 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.023 -4.612 24.680 25.820 hybrid contribution 0.038 -1.764 -1.140 2.100 sum 6.062 -6.376 23.540 25.130 Atomic orbital electron populations 1.22043 0.94855 1.01728 1.02371 1.21357 0.94453 0.97579 0.83300 0.89577 1.46045 1.66505 1.13823 1.09752 1.18162 0.78559 0.86796 0.83026 1.90854 1.49532 1.15003 1.84519 1.20117 1.03526 0.93931 0.94203 1.21336 0.97081 0.93062 0.98939 1.21191 0.99511 1.00429 0.92828 1.21281 0.98053 0.93891 0.98276 1.21194 0.99796 0.94516 0.97457 1.18721 0.97018 0.91841 0.92562 1.18821 0.95284 0.91338 0.94784 1.21934 0.99337 0.94323 0.96909 1.22539 0.94766 0.93115 0.95571 1.67561 1.06373 1.40837 1.04657 1.22524 0.97261 0.90203 0.96603 1.22036 0.99469 0.96567 0.99965 1.20382 0.92084 0.95532 0.86168 0.93258 1.22452 0.99078 1.01122 0.99788 1.42280 1.78220 1.10757 1.04702 1.19133 1.37250 0.93828 0.86987 0.91231 1.24739 1.01976 0.95948 0.98024 1.69652 1.50542 1.08598 1.29018 0.86278 0.77744 0.78596 0.83588 1.21272 1.21685 1.21292 0.93131 0.93478 0.90058 0.77008 0.85108 0.85156 0.85257 0.85148 0.85622 0.83000 0.83103 0.85283 0.94680 0.92616 0.93390 0.78022 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.33 37.16 0.35 -2.29 16 2 C 0.14 2.30 2.21 -67.93 -0.15 2.15 16 3 H 0.09 1.64 7.58 -51.93 -0.39 1.24 16 4 N -0.71 -9.52 4.33 -54.80 -0.24 -9.75 16 5 C 0.55 7.77 7.55 -12.40 -0.09 7.68 16 6 O -0.52 -9.00 12.16 5.31 0.06 -8.94 16 7 C -0.11 -1.31 5.89 -104.69 -0.62 -1.93 16 8 C -0.09 -0.74 9.52 -39.22 -0.37 -1.12 16 9 C -0.12 -0.85 10.02 -39.58 -0.40 -1.25 16 10 C -0.10 -0.65 10.03 -39.55 -0.40 -1.05 16 11 C -0.11 -0.92 9.68 -39.29 -0.38 -1.30 16 12 C 0.00 0.00 5.44 -104.55 -0.57 -0.57 16 13 C 0.01 0.07 4.08 -104.60 -0.43 -0.35 16 14 C -0.11 -1.38 7.08 -39.07 -0.28 -1.66 16 15 C 0.10 1.28 11.17 -17.61 -0.20 1.08 16 16 N -0.49 -6.77 10.35 -13.34 -0.14 -6.91 16 17 C 0.09 1.08 11.17 -17.60 -0.20 0.89 16 18 C -0.16 -1.81 9.80 -39.08 -0.38 -2.19 16 19 C 0.17 3.15 2.52 -67.93 -0.17 2.98 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 C -0.16 -2.83 9.33 37.16 0.35 -2.48 16 22 N -0.72 -17.22 4.43 -53.42 -0.24 -17.45 16 23 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 24 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 27 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.61 7.45 -51.92 -0.39 1.22 16 34 H 0.40 4.27 6.46 -40.82 -0.26 4.01 16 35 H 0.13 0.90 6.45 -52.48 -0.34 0.56 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.13 1.61 8.01 -52.49 -0.42 1.19 16 40 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 43 H 0.03 0.49 7.44 -51.92 -0.39 0.10 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.39 10.02 7.58 -40.82 -0.31 9.71 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -32.80 391.55 -9.82 -42.61 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -6.69 Total: 12.89 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -4.18 Total: -8.38 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.11 Total: -61.06 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.06 Total: -8.94 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.80 -9.82 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733978161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.246 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds