Wall clock time and date at job start Tue Mar 31 2020 23:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47666 * 2 1 4 4 N 1.46507 * 109.46738 * 119.99597 * 2 1 3 5 5 C 1.34786 * 119.99607 * 274.99584 * 4 2 1 6 6 O 1.21565 * 120.00084 * 0.02562 * 5 4 2 7 7 C 1.47686 * 119.99568 * 180.02562 * 5 4 2 8 8 C 1.39472 * 120.21194 * 353.77443 * 7 5 4 9 9 C 1.37969 * 119.97581 * 180.02562 * 8 7 5 10 10 C 1.38496 * 120.39530 * 0.02562 * 9 8 7 11 11 C 1.38077 * 120.41900 * 0.02562 * 10 9 8 12 12 C 1.39174 * 120.01957 * 359.71741 * 11 10 9 13 13 C 1.48226 * 120.19835 * 180.29748 * 12 11 10 14 14 C 1.39834 * 120.90968 * 119.92088 * 13 12 11 15 15 C 1.37994 * 119.00714 * 179.79788 * 14 13 12 16 16 N 1.31906 * 120.89326 * 0.49700 * 15 14 13 17 17 C 1.31916 * 122.02338 * 359.72935 * 16 15 14 18 18 C 1.37994 * 120.88730 * 0.03148 * 17 16 15 19 19 C 1.52998 * 109.47293 * 239.98900 * 2 1 3 20 20 H 1.08996 * 109.47196 * 300.00597 * 19 2 1 21 21 C 1.52999 * 109.47293 * 180.02562 * 19 2 1 22 22 N 1.46507 * 109.46659 * 60.00649 * 19 2 1 23 23 C 1.36940 * 119.99766 * 204.72556 * 22 19 2 24 24 H 1.08006 * 119.99775 * 0.27043 * 23 22 19 25 25 C 1.38806 * 119.99885 * 180.27898 * 23 22 19 26 26 N 1.31623 * 119.99949 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00042 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47382 * 59.99272 * 27 25 23 29 29 H 1.48496 * 109.47372 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.46704 * 299.99259 * 27 25 23 31 31 H 1.08996 * 109.47488 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47274 * 300.00863 * 1 2 3 33 33 H 1.09008 * 109.46793 * 60.00314 * 1 2 3 34 34 H 0.96999 * 120.00422 * 94.99825 * 4 2 1 35 35 H 1.08005 * 120.00763 * 0.02562 * 8 7 5 36 36 H 1.07996 * 119.80869 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.78836 * 180.02562 * 10 9 8 38 38 H 1.08003 * 119.98708 * 180.02562 * 11 10 9 39 39 H 1.07993 * 120.49417 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.55425 * 180.22737 * 15 14 13 41 41 H 1.08001 * 119.55738 * 180.02562 * 17 16 15 42 42 H 1.08005 * 120.49180 * 179.97438 * 18 17 16 43 43 H 1.09008 * 109.46793 * 60.00786 * 21 19 2 44 44 H 1.08997 * 109.47300 * 179.97438 * 21 19 2 45 45 H 1.08994 * 109.47404 * 300.00957 * 21 19 2 46 46 H 0.96998 * 119.99903 * 24.99542 * 22 19 2 47 47 H 0.96999 * 119.99695 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8575 1.1614 2.4118 7 6 2.6397 -0.7140 3.5630 8 6 2.8497 -2.0926 3.5410 9 6 3.3097 -2.7380 4.6704 10 6 3.5648 -2.0249 5.8300 11 6 3.3615 -0.6598 5.8703 12 6 2.9031 0.0096 4.7395 13 6 2.6898 1.4759 4.7763 14 6 3.3900 2.3255 3.9141 15 6 3.1577 3.6842 3.9791 16 7 2.2973 4.1836 4.8452 17 6 1.6199 3.4180 5.6790 18 6 1.7875 2.0482 5.6781 19 6 2.0400 -0.7215 -1.2491 20 1 1.6766 -1.7491 -1.2490 21 6 3.5700 -0.7220 -1.2488 22 7 1.5518 -0.0309 -2.4454 23 6 1.4263 -0.7128 -3.6263 24 1 1.6832 -1.7608 -3.6746 25 6 0.9692 -0.0571 -4.7611 26 7 0.6559 1.2199 -4.7020 27 14 0.7974 -0.9875 -6.3719 28 1 -0.1593 -2.1094 -6.1959 29 1 0.2933 -0.0680 -7.4233 30 1 2.1213 -1.5247 -6.7768 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2489 -1.6317 1.1529 35 1 2.6524 -2.6548 2.6402 36 1 3.4710 -3.8056 4.6505 37 1 3.9250 -2.5400 6.7083 38 1 3.5631 -0.1106 6.7781 39 1 4.0991 1.9240 3.2055 40 1 3.6909 4.3482 3.3148 41 1 0.9249 3.8692 6.3717 42 1 1.2298 1.4275 6.3639 43 1 3.9329 -1.2361 -0.3587 44 1 3.9334 -1.2364 -2.1384 45 1 3.9338 0.3054 -1.2485 46 1 1.3211 0.9102 -2.4019 47 1 0.3361 1.6780 -5.4950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733978161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:12 Heat of formation + Delta-G solvation = 21.888370 kcal Electronic energy + Delta-G solvation = -28977.177142 eV Core-core repulsion = 25124.358522 eV Total energy + Delta-G solvation = -3852.818620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.73855 -40.59125 -39.42272 -38.14230 -35.71586 -34.45811 -33.67459 -32.44178 -32.04796 -30.82552 -30.50830 -30.14874 -25.93269 -25.70190 -24.72743 -24.39654 -23.76834 -22.41589 -21.53410 -21.32212 -19.45719 -18.93828 -18.00464 -17.22698 -17.11747 -16.75206 -16.58870 -16.23817 -16.00237 -15.76726 -15.69586 -15.26162 -15.14498 -14.79646 -14.68488 -14.53666 -14.32069 -14.16943 -14.09545 -13.66363 -13.42566 -13.18890 -12.93782 -12.74097 -12.71241 -12.59809 -12.56454 -12.27687 -12.21986 -12.19851 -11.74594 -11.49989 -11.31155 -10.97380 -10.46895 -10.37899 -10.23946 -9.95308 -9.84076 -9.59933 -9.02264 -7.92155 -5.21521 -0.31165 0.14068 0.30594 0.61211 1.48538 1.51151 1.57101 1.90055 2.07763 2.59277 2.81237 2.94579 3.41837 3.42320 3.62716 3.63684 3.78686 3.88732 4.00887 4.02720 4.12911 4.18732 4.21149 4.29559 4.32950 4.42437 4.46285 4.56438 4.65313 4.73349 4.75944 4.85767 4.89046 4.89496 4.94137 5.02763 5.12089 5.15555 5.21421 5.27911 5.34402 5.45806 5.47358 5.48451 5.50196 5.58066 5.82221 5.89630 6.28223 6.56087 7.08675 7.23763 7.34656 8.07895 8.31184 9.31194 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.002797 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.732870 B =10007.893004 C =11377.637358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.155 3.845 3 H 0.058 0.942 4 N -0.699 5.699 5 C 0.546 3.454 6 O -0.560 6.560 7 C -0.137 4.137 8 C -0.086 4.086 9 C -0.116 4.116 10 C -0.085 4.085 11 C -0.112 4.112 12 C -0.020 4.020 13 C 0.001 3.999 14 C -0.119 4.119 15 C 0.077 3.923 16 N -0.513 5.513 17 C 0.083 3.917 18 C -0.162 4.162 19 C 0.169 3.831 20 H 0.062 0.938 21 C -0.154 4.154 22 N -0.731 5.731 23 C -0.234 4.234 24 H 0.081 0.919 25 C -0.076 4.076 26 N -0.971 5.971 27 Si 0.971 3.029 28 H -0.276 1.276 29 H -0.301 1.301 30 H -0.278 1.278 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.411 0.589 35 H 0.148 0.852 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.146 0.854 39 H 0.119 0.881 40 H 0.158 0.842 41 H 0.179 0.821 42 H 0.156 0.844 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.031 0.969 46 H 0.371 0.629 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.169 -10.033 27.189 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.049 3.951 3 H 0.076 0.924 4 N -0.352 5.352 5 C 0.335 3.665 6 O -0.440 6.440 7 C -0.141 4.141 8 C -0.104 4.104 9 C -0.134 4.134 10 C -0.103 4.103 11 C -0.130 4.130 12 C -0.021 4.021 13 C -0.007 4.007 14 C -0.139 4.139 15 C -0.078 4.078 16 N -0.222 5.222 17 C -0.074 4.074 18 C -0.181 4.181 19 C 0.060 3.940 20 H 0.080 0.920 21 C -0.214 4.214 22 N -0.371 5.371 23 C -0.366 4.366 24 H 0.099 0.901 25 C -0.268 4.268 26 N -0.622 5.622 27 Si 0.801 3.199 28 H -0.202 1.202 29 H -0.227 1.227 30 H -0.204 1.204 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.249 0.751 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.164 0.836 39 H 0.137 0.863 40 H 0.175 0.825 41 H 0.196 0.804 42 H 0.173 0.827 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.203 0.797 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.830 -8.443 27.077 29.174 hybrid contribution -0.161 -0.685 -1.697 1.837 sum 6.669 -9.129 25.381 27.785 Atomic orbital electron populations 1.21909 0.95328 1.02048 1.00682 1.20854 0.93862 0.96278 0.84071 0.92372 1.45771 1.66460 1.14398 1.08557 1.18694 0.77631 0.86449 0.83753 1.90843 1.51136 1.16829 1.85155 1.19922 1.06034 0.95154 0.92944 1.21574 0.96568 0.91793 1.00479 1.21603 0.97807 1.01988 0.91960 1.21724 0.96008 0.93165 0.99373 1.21424 0.99139 0.95457 0.96988 1.18812 0.98609 0.91040 0.93618 1.19118 0.94830 0.92478 0.94300 1.21952 0.99974 0.94479 0.97528 1.22723 0.95320 0.93667 0.96105 1.67568 1.07262 1.41807 1.05607 1.23053 0.97147 0.90795 0.96446 1.22345 0.99104 0.96631 1.00063 1.20555 0.92938 0.95590 0.84937 0.91989 1.22294 0.97497 1.00488 1.01073 1.42473 1.78501 1.10274 1.05854 1.19559 1.34991 0.94281 0.87746 0.90089 1.25540 1.03057 0.96777 1.01441 1.69828 1.52700 1.10309 1.29349 0.85244 0.77958 0.77282 0.79462 1.20234 1.22747 1.20410 0.91676 0.93760 0.93084 0.75123 0.83460 0.81979 0.81891 0.83588 0.86296 0.82454 0.80450 0.82667 0.90857 0.93735 0.95026 0.79729 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.33 71.98 0.67 -4.32 16 2 C 0.16 5.25 2.21 44.99 0.10 5.34 16 3 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 4 N -0.70 -18.00 4.33 -445.54 -1.93 -19.93 16 5 C 0.55 15.31 7.55 86.74 0.65 15.97 16 6 O -0.56 -19.99 12.16 -3.92 -0.05 -20.04 16 7 C -0.14 -2.91 5.89 -19.91 -0.12 -3.03 16 8 C -0.09 -1.19 9.52 22.50 0.21 -0.98 16 9 C -0.12 -1.05 10.02 22.27 0.22 -0.83 16 10 C -0.08 -0.74 10.03 22.29 0.22 -0.52 16 11 C -0.11 -1.49 9.68 22.46 0.22 -1.28 16 12 C -0.02 -0.40 5.44 -19.82 -0.11 -0.51 16 13 C 0.00 0.03 4.08 -19.85 -0.08 -0.05 16 14 C -0.12 -3.30 7.08 22.60 0.16 -3.14 16 15 C 0.08 2.19 11.17 84.62 0.95 3.14 16 16 N -0.51 -14.84 10.35 -196.12 -2.03 -16.87 16 17 C 0.08 1.94 11.17 84.62 0.95 2.89 16 18 C -0.16 -3.52 9.80 22.60 0.22 -3.30 16 19 C 0.17 6.20 2.52 44.99 0.11 6.32 16 20 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 21 C -0.15 -5.13 9.33 71.98 0.67 -4.46 16 22 N -0.73 -35.66 4.43 -322.93 -1.43 -37.09 16 23 C -0.23 -12.51 9.93 84.03 0.83 -11.68 16 24 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 25 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 26 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 27 Si 0.97 45.53 29.55 68.60 2.03 47.55 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 30 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.05 2.11 7.45 -2.38 -0.02 2.09 16 34 H 0.41 7.82 6.46 -92.71 -0.60 7.22 16 35 H 0.15 1.44 6.45 -2.91 -0.02 1.42 16 36 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 38 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.12 3.29 8.01 -2.91 -0.02 3.27 16 40 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.07 1.87 7.44 -2.38 -0.02 1.85 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.37 20.14 7.58 -92.71 -0.70 19.43 16 47 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -74.33 391.55 2.92 -71.41 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.31 Total: 38.53 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 6.36 Total: -4.28 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -5.11 Total: -133.17 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.33 2.92 -71.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733978161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.295 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds