Wall clock time and date at job start Tue Mar 31 2020 23:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47318 * 2 1 4 4 N 1.46501 * 109.47274 * 120.00312 * 2 1 3 5 5 C 1.36945 * 119.99700 * 274.99876 * 4 2 1 6 6 H 1.08005 * 119.99954 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00030 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99847 * 0.27220 * 7 5 4 9 9 Si 1.86803 * 120.00237 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47073 * 89.99779 * 9 7 5 11 11 H 1.48499 * 109.47195 * 209.99804 * 9 7 5 12 12 H 1.48499 * 109.46709 * 330.00108 * 9 7 5 13 13 C 1.53005 * 109.47125 * 239.99924 * 2 1 3 14 14 H 1.09002 * 109.46825 * 175.00193 * 13 2 1 15 15 C 1.52997 * 109.46955 * 295.00233 * 13 2 1 16 16 N 1.46499 * 109.46887 * 54.99985 * 13 2 1 17 17 C 1.34778 * 119.99745 * 154.99754 * 16 13 2 18 18 O 1.21575 * 119.99876 * 0.02562 * 17 16 13 19 19 C 1.47691 * 120.00170 * 180.02562 * 17 16 13 20 20 C 1.39466 * 120.20386 * 353.77598 * 19 17 16 21 21 C 1.37980 * 119.97044 * 180.02562 * 20 19 17 22 22 C 1.38489 * 120.39436 * 359.97438 * 21 20 19 23 23 C 1.38069 * 120.42518 * 0.02562 * 22 21 20 24 24 C 1.39179 * 120.01557 * 359.71690 * 23 22 21 25 25 C 1.48229 * 120.19956 * 180.29921 * 24 23 22 26 26 C 1.39818 * 120.91259 * 119.91485 * 25 24 23 27 27 C 1.37999 * 119.00998 * 179.79907 * 26 25 24 28 28 N 1.31909 * 120.89260 * 0.49104 * 27 26 25 29 29 C 1.31910 * 122.02130 * 359.73991 * 28 27 26 30 30 C 1.38003 * 120.88846 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.46868 * 300.00152 * 1 2 3 32 32 H 1.09001 * 109.47179 * 59.99886 * 1 2 3 33 33 H 1.08994 * 109.47173 * 180.02562 * 1 2 3 34 34 H 0.96992 * 120.00644 * 94.99390 * 4 2 1 35 35 H 0.96993 * 120.00140 * 359.72805 * 8 7 5 36 36 H 1.09003 * 109.47128 * 179.97438 * 15 13 2 37 37 H 1.09007 * 109.47167 * 299.99665 * 15 13 2 38 38 H 1.08997 * 109.47057 * 60.00000 * 15 13 2 39 39 H 0.96998 * 120.00316 * 335.00121 * 16 13 2 40 40 H 1.07998 * 120.01933 * 359.97438 * 20 19 17 41 41 H 1.07995 * 119.80007 * 179.97438 * 21 20 19 42 42 H 1.07996 * 119.78421 * 179.97438 * 22 21 20 43 43 H 1.07995 * 119.99481 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.49707 * 0.02562 * 26 25 24 45 45 H 1.08002 * 119.55952 * 180.23013 * 27 26 25 46 46 H 1.07997 * 119.55817 * 179.97438 * 29 28 27 47 47 H 1.08001 * 120.49144 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8927 1.0405 2.4242 7 6 2.6114 -0.6620 3.5092 8 7 2.9290 -1.9378 3.4489 9 14 2.7891 0.2697 5.1186 10 1 1.5211 0.1785 5.8860 11 1 3.8934 -0.3237 5.9147 12 1 3.0942 1.6950 4.8342 13 6 2.0400 -0.7213 -1.2493 14 1 3.1263 -0.6444 -1.2951 15 6 1.6352 -2.1954 -1.1880 16 7 1.4558 -0.1037 -2.4424 17 6 2.0913 -0.1938 -3.6275 18 8 3.1490 -0.7880 -3.7065 19 6 1.5027 0.4293 -4.8303 20 6 0.2309 0.9989 -4.7744 21 6 -0.3146 1.5793 -5.9011 22 6 0.3938 1.6011 -7.0909 23 6 1.6541 1.0420 -7.1646 24 6 2.2232 0.4568 -6.0373 25 6 3.5786 -0.1387 -6.1102 26 6 4.6164 0.3367 -5.3027 27 6 5.8620 -0.2493 -5.3997 28 7 6.0817 -1.2372 -6.2457 29 6 5.1319 -1.7121 -7.0283 30 6 3.8561 -1.1873 -6.9925 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6318 1.1526 35 1 2.8364 -2.4217 2.6134 36 1 1.9981 -2.7092 -2.0782 37 1 2.0698 -2.6550 -0.3002 38 1 0.5489 -2.2723 -1.1421 39 1 0.6118 0.3701 -2.3794 40 1 -0.3272 0.9850 -3.8499 41 1 -1.2998 2.0191 -5.8549 42 1 -0.0427 2.0576 -7.9669 43 1 2.2002 1.0625 -8.0961 44 1 4.4448 1.1480 -4.6109 45 1 6.6690 0.1085 -4.7775 46 1 5.3559 -2.5220 -7.7067 47 1 3.0834 -1.5808 -7.6365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733978162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:17 Heat of formation + Delta-G solvation = 46.219321 kcal Electronic energy + Delta-G solvation = -29018.920007 eV Core-core repulsion = 25167.156455 eV Total energy + Delta-G solvation = -3851.763551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.87495 -39.62826 -38.63830 -36.99279 -34.39832 -33.55865 -32.39876 -31.34923 -31.04506 -30.04763 -29.14379 -28.11966 -24.98402 -24.21226 -23.94976 -23.40987 -22.92770 -21.62009 -20.54385 -19.44704 -18.25865 -17.50386 -17.20346 -16.30214 -16.00738 -15.90279 -15.54023 -15.18734 -15.04764 -14.76611 -14.65288 -14.23758 -13.86519 -13.70948 -13.62471 -13.51695 -13.44735 -13.05085 -12.99236 -12.53549 -12.14116 -12.01825 -11.79910 -11.74721 -11.61948 -11.57319 -10.86840 -10.68574 -10.45688 -10.33979 -10.25402 -10.03129 -9.57233 -9.47279 -9.41320 -9.25205 -9.13517 -8.98027 -8.88511 -8.74640 -7.11149 -6.14048 -3.15340 0.41098 0.77208 1.20455 1.40830 2.73976 3.14670 3.49657 3.54175 3.54360 3.68587 3.84046 4.15312 4.42655 4.46102 4.48560 4.60760 4.64720 4.85280 4.95704 4.99333 5.05828 5.19043 5.21243 5.32136 5.35124 5.42467 5.49577 5.57218 5.61003 5.66694 5.76096 5.81368 5.91057 5.92317 5.97354 6.00680 6.03095 6.13728 6.24005 6.24890 6.32617 6.43210 6.47865 6.58492 6.69731 6.75991 6.93992 7.54988 7.76606 8.00833 8.23809 8.71375 9.16877 10.03071 10.16847 11.33997 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.002856 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.884530 B = 9799.981640 C =11190.139682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.174 3.826 3 H 0.053 0.947 4 N -0.730 5.730 5 C -0.334 4.334 6 H 0.065 0.935 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.083 2.917 10 H -0.295 1.295 11 H -0.287 1.287 12 H -0.295 1.295 13 C 0.137 3.863 14 H 0.089 0.911 15 C -0.158 4.158 16 N -0.712 5.712 17 C 0.547 3.453 18 O -0.522 6.522 19 C -0.115 4.115 20 C -0.086 4.086 21 C -0.121 4.121 22 C -0.096 4.096 23 C -0.111 4.111 24 C 0.000 4.000 25 C 0.006 3.994 26 C -0.106 4.106 27 C 0.096 3.904 28 N -0.485 5.485 29 C 0.092 3.908 30 C -0.160 4.160 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.369 0.631 35 H 0.255 0.745 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.396 0.604 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 7.108 -25.018 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.063 3.937 3 H 0.071 0.929 4 N -0.375 5.375 5 C -0.464 4.464 6 H 0.083 0.917 7 C -0.241 4.241 8 N -0.587 5.587 9 Si 0.914 3.086 10 H -0.223 1.223 11 H -0.213 1.213 12 H -0.221 1.221 13 C 0.032 3.968 14 H 0.107 0.893 15 C -0.216 4.216 16 N -0.365 5.365 17 C 0.334 3.666 18 O -0.399 6.399 19 C -0.119 4.119 20 C -0.105 4.105 21 C -0.139 4.139 22 C -0.114 4.114 23 C -0.129 4.129 24 C -0.001 4.001 25 C -0.003 4.003 26 C -0.126 4.126 27 C -0.060 4.060 28 N -0.194 5.194 29 C -0.066 4.066 30 C -0.180 4.180 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.205 0.795 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.233 0.767 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.170 0.830 46 H 0.169 0.831 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.143 6.405 -23.425 24.636 hybrid contribution -1.987 0.466 -1.401 2.476 sum -6.130 6.871 -24.826 26.479 Atomic orbital electron populations 1.22524 0.99293 1.01209 0.99787 1.20287 0.92137 0.95561 0.85706 0.92948 1.42453 1.79341 1.09936 1.05786 1.20047 1.42344 0.95176 0.88869 0.91671 1.25780 0.99140 0.97501 1.01656 1.70853 1.50896 1.08432 1.28488 0.83194 0.76486 0.73840 0.75111 1.22319 1.21338 1.22135 1.21349 0.99063 0.92776 0.83590 0.89330 1.22127 1.01527 0.95854 1.02120 1.46190 1.25660 1.56414 1.08265 1.18213 0.84772 0.80509 0.83129 1.90857 1.21629 1.42270 1.85120 1.20097 0.95601 1.02265 0.93887 1.21329 0.94061 0.95961 0.99100 1.21194 1.00412 0.99682 0.92636 1.21283 0.94182 0.97830 0.98127 1.21198 0.95680 0.98451 0.97592 1.18722 0.92566 0.96406 0.92389 1.18818 0.91734 0.94816 0.94892 1.21936 0.93208 1.00393 0.97036 1.22547 0.95991 0.92073 0.95355 1.67563 1.35568 1.10956 1.05316 1.22531 0.88871 0.98375 0.96793 1.22041 0.98554 0.97424 1.00019 0.92220 0.94941 0.92881 0.79518 0.93345 0.92905 0.91007 0.92461 0.76708 0.85212 0.85112 0.85195 0.85090 0.85628 0.82979 0.83074 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.01 37.16 0.33 -2.43 16 2 C 0.17 3.31 2.93 -67.93 -0.20 3.11 16 3 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.73 -17.72 5.03 -53.42 -0.27 -17.99 16 5 C -0.33 -9.17 9.93 -15.06 -0.15 -9.32 16 6 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 7 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 8 N -0.94 -28.91 13.70 55.49 0.76 -28.15 16 9 Si 1.08 25.75 29.92 -169.99 -5.09 20.66 16 10 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.14 2.32 2.62 -67.93 -0.18 2.14 16 14 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 15 C -0.16 -2.65 9.00 37.16 0.33 -2.31 16 16 N -0.71 -9.73 4.94 -54.80 -0.27 -10.00 16 17 C 0.55 7.86 7.55 -12.40 -0.09 7.77 16 18 O -0.52 -9.07 12.17 5.30 0.06 -9.00 16 19 C -0.12 -1.33 5.89 -104.69 -0.62 -1.95 16 20 C -0.09 -0.76 9.52 -39.22 -0.37 -1.13 16 21 C -0.12 -0.85 10.02 -39.58 -0.40 -1.25 16 22 C -0.10 -0.64 10.03 -39.55 -0.40 -1.04 16 23 C -0.11 -0.91 9.68 -39.29 -0.38 -1.29 16 24 C 0.00 0.00 5.44 -104.55 -0.57 -0.57 16 25 C 0.01 0.07 4.07 -104.61 -0.43 -0.36 16 26 C -0.11 -1.40 7.08 -39.08 -0.28 -1.68 16 27 C 0.10 1.29 11.17 -17.61 -0.20 1.10 16 28 N -0.48 -6.79 10.35 -13.34 -0.14 -6.92 16 29 C 0.09 1.08 11.17 -17.60 -0.20 0.89 16 30 C -0.16 -1.80 9.80 -39.07 -0.38 -2.19 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.41 6.29 -51.93 -0.33 0.08 16 33 H 0.05 0.89 6.57 -51.93 -0.34 0.54 16 34 H 0.37 9.27 4.60 -40.82 -0.19 9.08 16 35 H 0.26 7.72 6.77 -40.82 -0.28 7.45 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.32 6.29 -51.93 -0.33 1.00 16 38 H 0.06 0.89 6.57 -51.93 -0.34 0.55 16 39 H 0.40 4.45 4.65 -40.82 -0.19 4.26 16 40 H 0.13 0.93 6.45 -52.49 -0.34 0.59 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.13 1.62 8.01 -52.49 -0.42 1.20 16 45 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 46 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 47 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -34.24 382.16 -9.59 -43.83 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -6.15 Total: 13.66 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -4.26 Total: -11.84 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.08 Total: -63.07 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.06 Total: -9.00 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.09 Total: 20.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.24 -9.59 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733978162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.046 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds