Wall clock time and date at job start Tue Mar 31 2020 23:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47318 * 2 1 4 4 N 1.46501 * 109.47274 * 120.00312 * 2 1 3 5 5 C 1.36945 * 119.99700 * 274.99876 * 4 2 1 6 6 H 1.08005 * 119.99954 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00030 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99847 * 0.27220 * 7 5 4 9 9 Si 1.86803 * 120.00237 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47073 * 89.99779 * 9 7 5 11 11 H 1.48499 * 109.47195 * 209.99804 * 9 7 5 12 12 H 1.48499 * 109.46709 * 330.00108 * 9 7 5 13 13 C 1.53005 * 109.47125 * 239.99924 * 2 1 3 14 14 H 1.09002 * 109.46825 * 175.00193 * 13 2 1 15 15 C 1.52997 * 109.46955 * 295.00233 * 13 2 1 16 16 N 1.46499 * 109.46887 * 54.99985 * 13 2 1 17 17 C 1.34778 * 119.99745 * 154.99754 * 16 13 2 18 18 O 1.21575 * 119.99876 * 0.02562 * 17 16 13 19 19 C 1.47691 * 120.00170 * 180.02562 * 17 16 13 20 20 C 1.39466 * 120.20386 * 353.77598 * 19 17 16 21 21 C 1.37980 * 119.97044 * 180.02562 * 20 19 17 22 22 C 1.38489 * 120.39436 * 359.97438 * 21 20 19 23 23 C 1.38069 * 120.42518 * 0.02562 * 22 21 20 24 24 C 1.39179 * 120.01557 * 359.71690 * 23 22 21 25 25 C 1.48229 * 120.19956 * 180.29921 * 24 23 22 26 26 C 1.39818 * 120.91259 * 119.91485 * 25 24 23 27 27 C 1.37999 * 119.00998 * 179.79907 * 26 25 24 28 28 N 1.31909 * 120.89260 * 0.49104 * 27 26 25 29 29 C 1.31910 * 122.02130 * 359.73991 * 28 27 26 30 30 C 1.38003 * 120.88846 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.46868 * 300.00152 * 1 2 3 32 32 H 1.09001 * 109.47179 * 59.99886 * 1 2 3 33 33 H 1.08994 * 109.47173 * 180.02562 * 1 2 3 34 34 H 0.96992 * 120.00644 * 94.99390 * 4 2 1 35 35 H 0.96993 * 120.00140 * 359.72805 * 8 7 5 36 36 H 1.09003 * 109.47128 * 179.97438 * 15 13 2 37 37 H 1.09007 * 109.47167 * 299.99665 * 15 13 2 38 38 H 1.08997 * 109.47057 * 60.00000 * 15 13 2 39 39 H 0.96998 * 120.00316 * 335.00121 * 16 13 2 40 40 H 1.07998 * 120.01933 * 359.97438 * 20 19 17 41 41 H 1.07995 * 119.80007 * 179.97438 * 21 20 19 42 42 H 1.07996 * 119.78421 * 179.97438 * 22 21 20 43 43 H 1.07995 * 119.99481 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.49707 * 0.02562 * 26 25 24 45 45 H 1.08002 * 119.55952 * 180.23013 * 27 26 25 46 46 H 1.07997 * 119.55817 * 179.97438 * 29 28 27 47 47 H 1.08001 * 120.49144 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8927 1.0405 2.4242 7 6 2.6114 -0.6620 3.5092 8 7 2.9290 -1.9378 3.4489 9 14 2.7891 0.2697 5.1186 10 1 1.5211 0.1785 5.8860 11 1 3.8934 -0.3237 5.9147 12 1 3.0942 1.6950 4.8342 13 6 2.0400 -0.7213 -1.2493 14 1 3.1263 -0.6444 -1.2951 15 6 1.6352 -2.1954 -1.1880 16 7 1.4558 -0.1037 -2.4424 17 6 2.0913 -0.1938 -3.6275 18 8 3.1490 -0.7880 -3.7065 19 6 1.5027 0.4293 -4.8303 20 6 0.2309 0.9989 -4.7744 21 6 -0.3146 1.5793 -5.9011 22 6 0.3938 1.6011 -7.0909 23 6 1.6541 1.0420 -7.1646 24 6 2.2232 0.4568 -6.0373 25 6 3.5786 -0.1387 -6.1102 26 6 4.6164 0.3367 -5.3027 27 6 5.8620 -0.2493 -5.3997 28 7 6.0817 -1.2372 -6.2457 29 6 5.1319 -1.7121 -7.0283 30 6 3.8561 -1.1873 -6.9925 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6318 1.1526 35 1 2.8364 -2.4217 2.6134 36 1 1.9981 -2.7092 -2.0782 37 1 2.0698 -2.6550 -0.3002 38 1 0.5489 -2.2723 -1.1421 39 1 0.6118 0.3701 -2.3794 40 1 -0.3272 0.9850 -3.8499 41 1 -1.2998 2.0191 -5.8549 42 1 -0.0427 2.0576 -7.9669 43 1 2.2002 1.0625 -8.0961 44 1 4.4448 1.1480 -4.6109 45 1 6.6690 0.1085 -4.7775 46 1 5.3559 -2.5220 -7.7067 47 1 3.0834 -1.5808 -7.6365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733978162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:16 Heat of formation + Delta-G solvation = 24.845821 kcal Electronic energy + Delta-G solvation = -29019.846831 eV Core-core repulsion = 25167.156455 eV Total energy + Delta-G solvation = -3852.690376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.80760 -40.67553 -39.53102 -38.41376 -35.98594 -34.54510 -33.78160 -32.40563 -32.05851 -30.84625 -30.50181 -29.78132 -26.16919 -25.81975 -24.87424 -24.63882 -24.03475 -22.48800 -21.57497 -20.85208 -19.57262 -19.18160 -18.08255 -17.32213 -17.15808 -16.85667 -16.73025 -16.27894 -16.04064 -15.96413 -15.72961 -15.62156 -15.50480 -14.89070 -14.68237 -14.59946 -14.39849 -14.20641 -14.07925 -13.70321 -13.44251 -13.31960 -13.14768 -12.76399 -12.67223 -12.60382 -12.38652 -12.24822 -12.05298 -11.87914 -11.81567 -11.42106 -11.25887 -10.97244 -10.50924 -10.42549 -10.30575 -9.99587 -9.89518 -9.64148 -9.16683 -8.39564 -5.34451 -0.35719 0.10014 0.26920 0.57393 1.57748 1.68587 1.82285 1.83408 2.00677 2.71500 2.76654 2.90901 3.38274 3.39534 3.57583 3.59313 3.72831 3.77596 3.84485 3.93928 3.98873 4.09266 4.17328 4.18031 4.26002 4.37200 4.42612 4.46658 4.55369 4.61435 4.69481 4.73291 4.81305 4.85082 4.85928 4.91459 5.04228 5.08588 5.12470 5.17358 5.30478 5.39881 5.42283 5.43609 5.50669 5.60238 5.78685 5.85894 6.46698 6.48819 7.05201 7.07109 7.15806 7.97581 8.08266 9.12067 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.002856 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.884530 B = 9799.981640 C =11190.139682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.044 0.956 4 N -0.746 5.746 5 C -0.328 4.328 6 H 0.069 0.931 7 C -0.105 4.105 8 N -0.976 5.976 9 Si 1.130 2.870 10 H -0.283 1.283 11 H -0.296 1.296 12 H -0.273 1.273 13 C 0.154 3.846 14 H 0.055 0.945 15 C -0.148 4.148 16 N -0.702 5.702 17 C 0.545 3.455 18 O -0.560 6.560 19 C -0.139 4.139 20 C -0.087 4.087 21 C -0.115 4.115 22 C -0.083 4.083 23 C -0.111 4.111 24 C -0.019 4.019 25 C 0.001 3.999 26 C -0.121 4.121 27 C 0.077 3.923 28 N -0.512 5.512 29 C 0.083 3.917 30 C -0.161 4.161 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.362 0.638 35 H 0.243 0.757 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.410 0.590 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.148 0.852 44 H 0.117 0.883 45 H 0.158 0.842 46 H 0.180 0.820 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.291 8.955 -27.359 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.062 0.938 4 N -0.390 5.390 5 C -0.459 4.459 6 H 0.087 0.913 7 C -0.296 4.296 8 N -0.625 5.625 9 Si 0.955 3.045 10 H -0.210 1.210 11 H -0.223 1.223 12 H -0.198 1.198 13 C 0.048 3.952 14 H 0.073 0.927 15 C -0.206 4.206 16 N -0.356 5.356 17 C 0.333 3.667 18 O -0.439 6.439 19 C -0.142 4.142 20 C -0.105 4.105 21 C -0.133 4.133 22 C -0.101 4.101 23 C -0.129 4.129 24 C -0.020 4.020 25 C -0.007 4.007 26 C -0.141 4.141 27 C -0.078 4.078 28 N -0.222 5.222 29 C -0.074 4.074 30 C -0.181 4.181 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.196 0.804 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.250 0.750 40 H 0.163 0.837 41 H 0.181 0.819 42 H 0.183 0.817 43 H 0.165 0.835 44 H 0.136 0.864 45 H 0.175 0.825 46 H 0.197 0.803 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.304 8.305 -25.821 28.091 hybrid contribution -1.087 -0.042 -0.855 1.384 sum -8.391 8.264 -26.677 29.161 Atomic orbital electron populations 1.22341 0.96365 1.01655 1.01308 1.20457 0.93987 0.94634 0.84680 0.93798 1.42663 1.79866 1.09814 1.06679 1.20387 1.40217 0.95394 0.89891 0.91304 1.27173 0.99572 0.97614 1.05251 1.70964 1.53730 1.09736 1.28029 0.82595 0.76513 0.73754 0.71684 1.20971 1.22306 1.19813 1.20836 0.97236 0.92944 0.84207 0.92693 1.22015 1.02362 0.95427 1.00821 1.45921 1.26090 1.56429 1.07133 1.18770 0.84207 0.79823 0.83875 1.90845 1.23358 1.43987 1.85729 1.19905 0.97213 1.04519 0.92572 1.21562 0.92887 0.95379 1.00699 1.21611 1.01545 0.98321 0.91795 1.21737 0.93114 0.95995 0.99276 1.21437 0.96476 0.97824 0.97175 1.18815 0.92034 0.97790 0.93385 1.19114 0.92380 0.94866 0.94382 1.21948 0.93743 1.00730 0.97694 1.22718 0.96587 0.92577 0.95927 1.67572 1.36797 1.11565 1.06262 1.23073 0.88953 0.98755 0.96590 1.22357 0.98958 0.96777 0.99978 0.93790 0.90306 0.92957 0.80376 0.94651 0.93155 0.93292 0.90700 0.75011 0.83652 0.81869 0.81734 0.83452 0.86448 0.82501 0.80343 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.01 71.98 0.65 -4.23 16 2 C 0.17 6.53 2.93 44.99 0.13 6.66 16 3 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 4 N -0.75 -37.06 5.03 -322.93 -1.62 -38.68 16 5 C -0.33 -18.20 9.93 84.03 0.83 -17.37 16 6 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 7 C -0.11 -6.10 5.50 84.86 0.47 -5.64 16 8 N -0.98 -61.70 13.70 21.65 0.30 -61.41 16 9 Si 1.13 52.13 29.92 68.60 2.05 54.18 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 C 0.15 5.31 2.62 44.99 0.12 5.42 16 14 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 15 C -0.15 -5.06 9.00 71.98 0.65 -4.41 16 16 N -0.70 -18.62 4.94 -445.54 -2.20 -20.82 16 17 C 0.54 15.62 7.55 86.74 0.65 16.27 16 18 O -0.56 -20.27 12.17 -3.95 -0.05 -20.32 16 19 C -0.14 -3.00 5.89 -19.91 -0.12 -3.12 16 20 C -0.09 -1.23 9.52 22.50 0.21 -1.02 16 21 C -0.12 -1.05 10.02 22.27 0.22 -0.83 16 22 C -0.08 -0.72 10.03 22.29 0.22 -0.49 16 23 C -0.11 -1.47 9.68 22.46 0.22 -1.26 16 24 C -0.02 -0.40 5.44 -19.82 -0.11 -0.50 16 25 C 0.00 0.02 4.07 -19.85 -0.08 -0.06 16 26 C -0.12 -3.40 7.08 22.60 0.16 -3.24 16 27 C 0.08 2.22 11.17 84.62 0.95 3.16 16 28 N -0.51 -14.87 10.35 -196.11 -2.03 -16.90 16 29 C 0.08 1.96 11.17 84.63 0.95 2.90 16 30 C -0.16 -3.50 9.80 22.60 0.22 -3.27 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.70 6.29 -2.39 -0.02 1.68 16 33 H 0.05 1.64 6.57 -2.39 -0.02 1.63 16 34 H 0.36 18.97 4.60 -92.71 -0.43 18.54 16 35 H 0.24 15.37 6.77 -92.71 -0.63 14.74 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.89 6.29 -2.38 -0.01 1.88 16 38 H 0.07 2.26 6.57 -2.39 -0.02 2.25 16 39 H 0.41 8.21 4.65 -92.71 -0.43 7.78 16 40 H 0.15 1.49 6.45 -2.91 -0.02 1.47 16 41 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 42 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 43 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.12 3.32 8.01 -2.91 -0.02 3.30 16 45 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 46 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 47 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -78.21 382.16 3.09 -75.13 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: 0.29 Total: 39.84 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 6.35 Total: -11.02 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -5.56 Total: -137.82 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.18 kcal Total: -78.21 3.09 -75.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733978162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.975 kcal (2) G-P(sol) polarization free energy of solvation -78.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds