Wall clock time and date at job start Tue Mar 31 2020 23:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99408 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46855 * 299.99389 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.09006 * 109.51126 * 184.99727 * 13 2 1 15 15 C 1.53296 * 109.51206 * 64.90104 * 13 2 1 16 16 N 1.47152 * 108.38901 * 187.77162 * 15 13 2 17 17 C 1.34773 * 120.98350 * 230.51874 * 16 15 13 18 18 O 1.21281 * 119.99955 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00121 * 179.97438 * 17 16 15 20 20 N 1.46498 * 109.47164 * 179.97438 * 19 17 16 21 21 N 1.40168 * 126.35090 * 270.02226 * 20 19 17 22 22 C 1.29407 * 108.14107 * 180.02562 * 21 20 19 23 23 N 1.37359 * 108.82712 * 0.02562 * 22 21 20 24 24 C 1.46498 * 125.82963 * 180.02562 * 23 22 21 25 25 C 1.34817 * 108.33541 * 359.73425 * 23 22 21 26 26 O 1.21814 * 126.30519 * 180.28994 * 25 23 22 27 27 C 1.47151 * 118.03239 * 50.53234 * 16 15 13 28 28 C 1.53289 * 108.38681 * 309.46609 * 27 16 15 29 29 O 1.42960 * 109.51691 * 305.10322 * 13 2 1 30 30 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 31 31 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 33 33 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 34 34 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68396 * 307.49868 * 15 13 2 36 36 H 1.09004 * 109.68024 * 68.00855 * 15 13 2 37 37 H 1.08997 * 109.47372 * 299.99807 * 19 17 16 38 38 H 1.09005 * 109.47106 * 59.99740 * 19 17 16 39 39 H 1.07994 * 125.58670 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47444 * 359.97017 * 24 23 22 41 41 H 1.09007 * 109.47200 * 119.97639 * 24 23 22 42 42 H 1.09000 * 109.47189 * 239.97127 * 24 23 22 43 43 H 1.08995 * 109.68172 * 69.19319 * 27 16 15 44 44 H 1.08999 * 109.67716 * 189.74474 * 27 16 15 45 45 H 1.09005 * 109.51503 * 172.22814 * 28 27 16 46 46 H 1.09006 * 109.51733 * 292.32810 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.4626 0.8103 5.5266 11 1 3.2862 -0.6517 6.1717 12 1 3.7440 1.3872 4.9407 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.7999 -1.2062 15 6 1.6328 0.0683 -2.4985 16 7 1.9677 -0.7350 -3.6850 17 6 2.6728 -0.2061 -4.7045 18 8 3.0408 0.9484 -4.6526 19 6 3.0041 -1.0491 -5.9089 20 7 3.7700 -0.2500 -6.8686 21 7 3.2436 0.5314 -7.9063 22 6 4.2305 1.0839 -8.5352 23 7 5.4072 0.6918 -7.9450 24 6 6.7520 1.0988 -8.3600 25 6 5.1130 -0.1263 -6.9147 26 8 5.9123 -0.6579 -6.1647 27 6 1.5098 -2.1329 -3.7256 28 6 1.9230 -2.8153 -2.4166 29 8 1.4686 -2.0303 -1.3115 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2490 -1.6319 1.1526 34 1 3.2330 -2.4001 4.2460 35 1 0.5603 0.2619 -2.4770 36 1 2.1757 1.0130 -2.5288 37 1 3.5960 -1.9100 -5.5982 38 1 2.0815 -1.3924 -6.3770 39 1 4.1432 1.7443 -9.3852 40 1 6.6808 1.7673 -9.2180 41 1 7.2455 1.6155 -7.5368 42 1 7.3303 0.2165 -8.6339 43 1 0.4250 -2.1610 -3.8277 44 1 1.9718 -2.6461 -4.5689 45 1 1.4755 -3.8080 -2.3664 46 1 3.0089 -2.9031 -2.3787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734176114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:56 Heat of formation + Delta-G solvation = 3.427992 kcal Electronic energy + Delta-G solvation = -30133.247528 eV Core-core repulsion = 25868.779142 eV Total energy + Delta-G solvation = -4264.468386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.69673 -40.40223 -38.47491 -37.48050 -35.56537 -35.53823 -34.57635 -32.61430 -32.12098 -30.36299 -29.03732 -28.38656 -27.59163 -26.52756 -24.69887 -23.46754 -23.17828 -22.32107 -21.51840 -19.71992 -19.46547 -18.01999 -17.79451 -17.17030 -16.73834 -16.49041 -16.33246 -15.95563 -15.69285 -15.41880 -15.14546 -14.88877 -14.48885 -14.42561 -14.08586 -13.63592 -13.59129 -13.30422 -13.20118 -12.89459 -12.76624 -12.55518 -12.49108 -12.23077 -12.15272 -11.98181 -11.32064 -11.11748 -10.83176 -10.79893 -10.70756 -10.53154 -10.51717 -10.28111 -10.05304 -9.83139 -9.79623 -9.61959 -8.86764 -8.82847 -8.53246 -6.90399 -5.70260 -2.99022 1.34181 1.65222 2.36506 2.40306 2.68869 2.90592 3.48113 3.52208 3.53306 3.96117 4.03566 4.14703 4.37937 4.53845 4.60152 4.69846 4.72829 4.83006 4.84232 5.01095 5.06601 5.10034 5.16349 5.33371 5.39330 5.49399 5.61933 5.67603 5.71837 5.73097 5.81750 5.99374 6.00685 6.16444 6.21592 6.34441 6.48581 6.67400 6.84603 7.13964 7.19103 7.29291 7.47817 7.74214 7.76068 7.93862 8.47917 9.59637 10.17219 10.53958 11.52141 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.002397 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.191591 B =11677.188416 C =12253.680335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.084 3.916 16 N -0.610 5.610 17 C 0.499 3.501 18 O -0.525 6.525 19 C 0.146 3.854 20 N -0.439 5.439 21 N -0.275 5.275 22 C 0.256 3.744 23 N -0.562 5.562 24 C 0.101 3.899 25 C 0.652 3.348 26 O -0.548 6.548 27 C 0.070 3.930 28 C 0.045 3.955 29 O -0.357 6.357 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.232 0.768 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 1.645 -30.337 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.016 3.984 14 H 0.082 0.918 15 C -0.038 4.038 16 N -0.345 5.345 17 C 0.285 3.715 18 O -0.401 6.401 19 C 0.020 3.980 20 N -0.259 5.259 21 N -0.096 5.096 22 C -0.043 4.043 23 N -0.291 5.291 24 C -0.040 4.040 25 C 0.351 3.649 26 O -0.420 6.420 27 C -0.053 4.053 28 C -0.033 4.033 29 O -0.274 6.274 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.223 0.777 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.248 0.752 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.154 1.782 -29.377 29.431 hybrid contribution 1.042 0.347 0.640 1.271 sum 1.197 2.129 -28.737 28.840 Atomic orbital electron populations 1.22415 0.98629 1.01629 0.99533 1.20187 0.92832 0.94597 0.84949 0.92346 1.42342 1.77870 1.10959 1.04859 1.19201 1.36769 0.93776 0.87303 0.91245 1.24738 1.02250 0.95942 0.97994 1.69668 1.50939 1.08494 1.28832 0.86276 0.77752 0.78583 0.83621 1.21301 1.21740 1.21311 1.22985 0.97712 0.83002 0.94666 0.91801 1.22510 1.01984 0.95815 0.83505 1.48152 1.54608 1.12942 1.18844 1.20851 0.78151 0.88348 0.84123 1.90731 1.52195 1.17618 1.79508 1.21251 0.98243 0.91987 0.86485 1.48203 1.04729 1.44721 1.28236 1.76970 1.21889 1.09900 1.00814 1.25941 0.80434 0.98870 0.99064 1.45870 1.08736 1.44603 1.29891 1.21816 0.79170 1.01537 1.01525 1.16652 0.83543 0.82201 0.82479 1.91113 1.51985 1.53705 1.45246 1.22577 1.01141 0.81463 1.00166 1.22911 0.99739 0.95242 0.85457 1.88108 1.67660 1.25763 1.45916 0.94694 0.92400 0.92887 0.77661 0.93524 0.89914 0.88299 0.85742 0.85661 0.75207 0.88797 0.90374 0.90413 0.89844 0.89392 0.87635 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.06 37.16 0.34 -2.69 16 2 C 0.19 3.80 2.77 -67.93 -0.19 3.61 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.72 -18.61 5.10 -53.43 -0.27 -18.88 16 5 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 9 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C 0.08 1.33 2.61 -26.58 -0.07 1.26 16 14 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 15 C 0.08 1.27 5.82 -3.53 -0.02 1.25 16 16 N -0.61 -7.93 3.02 -172.28 -0.52 -8.45 16 17 C 0.50 7.06 7.78 -10.99 -0.09 6.97 16 18 O -0.53 -9.68 15.90 5.56 0.09 -9.59 16 19 C 0.15 1.53 5.24 -5.19 -0.03 1.50 16 20 N -0.44 -5.42 3.11 -66.31 -0.21 -5.63 16 21 N -0.27 -2.85 12.53 29.87 0.37 -2.47 16 22 C 0.26 1.72 12.61 -89.11 -1.12 0.60 16 23 N -0.56 -5.00 3.14 -130.10 -0.41 -5.40 16 24 C 0.10 0.49 11.08 59.85 0.66 1.15 16 25 C 0.65 8.86 8.61 -86.73 -0.75 8.11 16 26 O -0.55 -9.42 17.77 5.09 0.09 -9.33 16 27 C 0.07 0.66 6.54 -3.54 -0.02 0.63 16 28 C 0.04 0.54 6.98 37.31 0.26 0.80 16 29 O -0.36 -6.03 9.24 -35.23 -0.33 -6.35 16 30 H 0.03 0.54 6.42 -51.93 -0.33 0.21 16 31 H 0.06 1.13 7.56 -51.92 -0.39 0.74 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.39 10.85 7.58 -40.82 -0.31 10.54 16 34 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.08 1.17 6.27 -51.93 -0.33 0.84 16 36 H 0.10 1.62 7.08 -51.93 -0.37 1.26 16 37 H 0.12 1.12 7.63 -51.93 -0.40 0.72 16 38 H 0.13 0.88 8.01 -51.93 -0.42 0.46 16 39 H 0.23 0.18 8.06 -52.49 -0.42 -0.25 16 40 H 0.09 0.07 8.07 -51.93 -0.42 -0.35 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.53 6.05 -51.93 -0.31 0.21 16 45 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -41.07 382.23 -7.61 -48.68 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.62 Total: 6.08 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: -1.27 Total: 15.77 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -0.31 Total: -68.88 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.15 Total: -25.27 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -41.07 -7.61 -48.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734176114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.108 kcal (2) G-P(sol) polarization free energy of solvation -41.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds