Wall clock time and date at job start Tue Mar 31 2020 23:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99408 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46855 * 299.99389 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.09006 * 109.51126 * 184.99727 * 13 2 1 15 15 C 1.53296 * 109.51206 * 64.90104 * 13 2 1 16 16 N 1.47152 * 108.38901 * 187.77162 * 15 13 2 17 17 C 1.34773 * 120.98350 * 230.51874 * 16 15 13 18 18 O 1.21281 * 119.99955 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00121 * 179.97438 * 17 16 15 20 20 N 1.46498 * 109.47164 * 179.97438 * 19 17 16 21 21 N 1.40168 * 126.35090 * 270.02226 * 20 19 17 22 22 C 1.29407 * 108.14107 * 180.02562 * 21 20 19 23 23 N 1.37359 * 108.82712 * 0.02562 * 22 21 20 24 24 C 1.46498 * 125.82963 * 180.02562 * 23 22 21 25 25 C 1.34817 * 108.33541 * 359.73425 * 23 22 21 26 26 O 1.21814 * 126.30519 * 180.28994 * 25 23 22 27 27 C 1.47151 * 118.03239 * 50.53234 * 16 15 13 28 28 C 1.53289 * 108.38681 * 309.46609 * 27 16 15 29 29 O 1.42960 * 109.51691 * 305.10322 * 13 2 1 30 30 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 31 31 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 33 33 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 34 34 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68396 * 307.49868 * 15 13 2 36 36 H 1.09004 * 109.68024 * 68.00855 * 15 13 2 37 37 H 1.08997 * 109.47372 * 299.99807 * 19 17 16 38 38 H 1.09005 * 109.47106 * 59.99740 * 19 17 16 39 39 H 1.07994 * 125.58670 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47444 * 359.97017 * 24 23 22 41 41 H 1.09007 * 109.47200 * 119.97639 * 24 23 22 42 42 H 1.09000 * 109.47189 * 239.97127 * 24 23 22 43 43 H 1.08995 * 109.68172 * 69.19319 * 27 16 15 44 44 H 1.08999 * 109.67716 * 189.74474 * 27 16 15 45 45 H 1.09005 * 109.51503 * 172.22814 * 28 27 16 46 46 H 1.09006 * 109.51733 * 292.32810 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.4626 0.8103 5.5266 11 1 3.2862 -0.6517 6.1717 12 1 3.7440 1.3872 4.9407 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.7999 -1.2062 15 6 1.6328 0.0683 -2.4985 16 7 1.9677 -0.7350 -3.6850 17 6 2.6728 -0.2061 -4.7045 18 8 3.0408 0.9484 -4.6526 19 6 3.0041 -1.0491 -5.9089 20 7 3.7700 -0.2500 -6.8686 21 7 3.2436 0.5314 -7.9063 22 6 4.2305 1.0839 -8.5352 23 7 5.4072 0.6918 -7.9450 24 6 6.7520 1.0988 -8.3600 25 6 5.1130 -0.1263 -6.9147 26 8 5.9123 -0.6579 -6.1647 27 6 1.5098 -2.1329 -3.7256 28 6 1.9230 -2.8153 -2.4166 29 8 1.4686 -2.0303 -1.3115 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2490 -1.6319 1.1526 34 1 3.2330 -2.4001 4.2460 35 1 0.5603 0.2619 -2.4770 36 1 2.1757 1.0130 -2.5288 37 1 3.5960 -1.9100 -5.5982 38 1 2.0815 -1.3924 -6.3770 39 1 4.1432 1.7443 -9.3852 40 1 6.6808 1.7673 -9.2180 41 1 7.2455 1.6155 -7.5368 42 1 7.3303 0.2165 -8.6339 43 1 0.4250 -2.1610 -3.8277 44 1 1.9718 -2.6461 -4.5689 45 1 1.4755 -3.8080 -2.3664 46 1 3.0089 -2.9031 -2.3787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734176114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:54 Heat of formation + Delta-G solvation = -27.760984 kcal Electronic energy + Delta-G solvation = -30134.599983 eV Core-core repulsion = 25868.779142 eV Total energy + Delta-G solvation = -4265.820841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.45169 -41.52451 -39.72186 -38.46904 -37.16244 -36.28992 -35.84096 -34.37413 -33.01840 -31.89946 -30.01964 -29.84689 -28.47374 -27.48489 -26.34801 -24.93724 -24.07249 -23.39709 -22.40125 -21.25110 -20.50119 -19.33570 -18.87475 -18.59462 -17.70195 -17.52514 -17.21308 -17.06167 -16.86221 -16.48548 -16.39891 -16.07631 -15.91555 -15.50635 -15.26308 -15.11702 -14.57922 -14.57166 -14.31404 -14.02594 -13.67413 -13.58829 -13.51601 -13.37496 -13.22640 -13.01183 -12.94659 -12.81412 -12.46017 -12.40237 -12.23856 -11.89313 -11.72767 -11.66045 -11.50944 -11.44879 -11.18240 -10.94632 -10.77765 -9.70167 -9.67341 -9.02623 -7.93506 -5.22518 0.60391 1.05407 1.33046 1.45478 1.49124 1.49532 1.55022 1.78574 2.24564 2.55446 2.76103 3.23421 3.39751 3.40689 3.55377 3.87640 3.92635 3.96080 4.00171 4.05854 4.07345 4.13815 4.31161 4.34837 4.37035 4.43246 4.46085 4.57823 4.59800 4.75205 4.77054 4.82947 4.87504 4.94495 4.95971 5.07705 5.18567 5.25041 5.49299 5.60817 5.65587 6.13531 6.22554 6.28131 6.57248 6.83648 6.91801 7.33893 8.09253 8.34432 9.29866 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.002397 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.191591 B =11677.188416 C =12253.680335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.054 0.946 4 N -0.733 5.733 5 C -0.242 4.242 6 H 0.076 0.924 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.974 3.026 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.280 1.280 13 C 0.092 3.908 14 H 0.032 0.968 15 C 0.095 3.905 16 N -0.609 5.609 17 C 0.495 3.505 18 O -0.577 6.577 19 C 0.145 3.855 20 N -0.447 5.447 21 N -0.309 5.309 22 C 0.280 3.720 23 N -0.559 5.559 24 C 0.093 3.907 25 C 0.629 3.371 26 O -0.601 6.601 27 C 0.072 3.928 28 C 0.034 3.966 29 O -0.379 6.379 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.166 0.834 39 H 0.292 0.708 40 H 0.145 0.855 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 2.296 -33.426 33.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.067 3.933 3 H 0.072 0.928 4 N -0.373 5.373 5 C -0.373 4.373 6 H 0.094 0.906 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.803 3.197 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.032 3.968 14 H 0.051 0.949 15 C -0.029 4.029 16 N -0.343 5.343 17 C 0.283 3.717 18 O -0.456 6.456 19 C 0.020 3.980 20 N -0.266 5.266 21 N -0.130 5.130 22 C -0.018 4.018 23 N -0.287 5.287 24 C -0.047 4.047 25 C 0.328 3.672 26 O -0.478 6.478 27 C -0.049 4.049 28 C -0.043 4.043 29 O -0.298 6.298 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.155 0.845 38 H 0.184 0.816 39 H 0.307 0.693 40 H 0.163 0.837 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.155 2.460 -32.544 32.657 hybrid contribution 1.455 0.165 1.447 2.058 sum 0.300 2.625 -31.097 31.209 Atomic orbital electron populations 1.22197 0.96530 1.01361 1.00531 1.20418 0.94144 0.94282 0.84466 0.92808 1.42515 1.78374 1.10450 1.05956 1.19609 1.35282 0.94146 0.88288 0.90626 1.25580 1.02986 0.96900 1.01500 1.69836 1.52687 1.10109 1.29375 0.85206 0.78009 0.77235 0.79276 1.20215 1.22139 1.20586 1.22519 0.95652 0.84084 0.94545 0.94946 1.22208 1.02410 0.94840 0.83394 1.48248 1.54173 1.14157 1.17733 1.21577 0.77039 0.88097 0.85010 1.90698 1.54170 1.20072 1.80701 1.21483 1.00111 0.91235 0.85132 1.48403 1.04486 1.44964 1.28727 1.76985 1.23145 1.11542 1.01356 1.27198 0.78622 0.97174 0.98792 1.46136 1.10751 1.43198 1.28576 1.22167 0.77368 1.02434 1.02725 1.17121 0.83854 0.82932 0.83312 1.91048 1.53354 1.55979 1.47456 1.22842 1.02873 0.79243 0.99971 1.23261 0.99409 0.96212 0.85424 1.88056 1.67746 1.25470 1.48524 0.91048 0.93213 0.94426 0.79277 0.94092 0.88296 0.90218 0.84504 0.81633 0.69303 0.83668 0.91873 0.90366 0.87483 0.85243 0.84729 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.06 71.98 0.65 -4.74 16 2 C 0.18 7.37 2.77 44.99 0.12 7.50 16 3 H 0.05 2.29 8.08 -2.39 -0.02 2.27 16 4 N -0.73 -39.16 5.10 -322.96 -1.65 -40.81 16 5 C -0.24 -13.98 9.93 84.03 0.83 -13.15 16 6 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 7 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 8 N -0.97 -61.64 13.06 21.65 0.28 -61.35 16 9 Si 0.97 47.82 29.55 68.60 2.03 49.85 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 13 C 0.09 3.31 2.61 30.69 0.08 3.39 16 14 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 15 C 0.09 2.84 5.82 86.35 0.50 3.34 16 16 N -0.61 -15.10 3.02 -817.37 -2.47 -17.57 16 17 C 0.49 13.68 7.78 87.66 0.68 14.36 16 18 O -0.58 -21.71 15.90 -3.03 -0.05 -21.75 16 19 C 0.15 2.80 5.24 85.63 0.45 3.25 16 20 N -0.45 -10.57 3.11 -481.78 -1.50 -12.07 16 21 N -0.31 -5.71 12.53 -59.42 -0.74 -6.46 16 22 C 0.28 2.85 12.61 179.82 2.27 5.12 16 23 N -0.56 -8.99 3.14 -683.68 -2.15 -11.14 16 24 C 0.09 0.71 11.08 127.77 1.42 2.13 16 25 C 0.63 17.06 8.61 178.99 1.54 18.60 16 26 O -0.60 -21.53 17.77 -4.71 -0.08 -21.62 16 27 C 0.07 1.15 6.54 86.35 0.56 1.72 16 28 C 0.03 0.77 6.98 72.08 0.50 1.27 16 29 O -0.38 -12.78 9.24 -148.98 -1.38 -14.16 16 30 H 0.07 2.08 6.42 -2.39 -0.02 2.07 16 31 H 0.05 1.91 7.56 -2.38 -0.02 1.89 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.38 21.82 7.58 -92.70 -0.70 21.11 16 34 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.10 2.62 6.27 -2.39 -0.01 2.61 16 36 H 0.08 2.71 7.08 -2.39 -0.02 2.69 16 37 H 0.14 2.25 7.63 -2.39 -0.02 2.23 16 38 H 0.17 1.73 8.01 -2.38 -0.02 1.71 16 39 H 0.29 -1.20 8.06 -2.91 -0.02 -1.22 16 40 H 0.15 -0.43 8.07 -2.39 -0.02 -0.45 16 41 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.13 1.03 6.05 -2.39 -0.01 1.01 16 45 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 46 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -96.45 382.23 2.69 -93.77 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.31 Total: 24.70 kcal Atomic # 6 Polarization: 28.54 SS G_CDS: 10.08 Total: 38.62 kcal Atomic # 7 Polarization: -141.18 SS G_CDS: -8.23 Total: -149.40 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -1.51 Total: -57.53 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -96.45 2.69 -93.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734176114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.008 kcal (2) G-P(sol) polarization free energy of solvation -96.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds