Wall clock time and date at job start Tue Mar 31 2020 23:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47305 * 2 1 4 4 N 1.46498 * 109.47133 * 239.99629 * 2 1 3 5 5 C 1.36941 * 120.00032 * 85.00370 * 4 2 1 6 6 H 1.08002 * 119.99440 * 359.97438 * 5 4 2 7 7 C 1.38803 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31626 * 120.00110 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00104 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47416 * 90.00159 * 9 7 5 11 11 H 1.48507 * 109.46946 * 209.99976 * 9 7 5 12 12 H 1.48495 * 109.46898 * 329.99608 * 9 7 5 13 13 C 1.52999 * 109.46834 * 119.99581 * 2 1 3 14 14 H 1.09008 * 109.51146 * 175.10356 * 13 2 1 15 15 C 1.53715 * 109.48832 * 295.36278 * 13 2 1 16 16 N 1.47155 * 108.16365 * 172.40029 * 15 13 2 17 17 C 1.34771 * 120.98171 * 129.43176 * 16 15 13 18 18 O 1.21283 * 119.99837 * 359.71783 * 17 16 15 19 19 C 1.50702 * 120.00108 * 179.71767 * 17 16 15 20 20 N 1.46503 * 109.47122 * 180.02562 * 19 17 16 21 21 N 1.40174 * 126.35057 * 270.02182 * 20 19 17 22 22 C 1.29398 * 108.13862 * 179.97438 * 21 20 19 23 23 N 1.37356 * 108.83241 * 0.26838 * 22 21 20 24 24 C 1.46493 * 125.83567 * 179.73045 * 23 22 21 25 25 C 1.34817 * 108.33356 * 359.56451 * 23 22 21 26 26 O 1.21816 * 126.30819 * 180.16469 * 25 23 22 27 27 C 1.47151 * 118.03609 * 309.16015 * 16 15 13 28 28 C 1.53300 * 108.38468 * 50.78460 * 27 16 15 29 29 O 1.42959 * 109.51545 * 55.00232 * 13 2 1 30 30 H 1.09006 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47041 * 300.00098 * 1 2 3 32 32 H 1.08996 * 109.46879 * 60.00467 * 1 2 3 33 33 H 0.96999 * 119.99668 * 265.00180 * 4 2 1 34 34 H 0.96997 * 120.00260 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.83404 * 52.71817 * 15 13 2 36 36 H 1.09003 * 109.74485 * 292.02536 * 15 13 2 37 37 H 1.09004 * 109.46920 * 60.00365 * 19 17 16 38 38 H 1.08998 * 109.46934 * 300.00489 * 19 17 16 39 39 H 1.08002 * 125.58061 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.46833 * 0.02603 * 24 23 22 41 41 H 1.09000 * 109.47022 * 120.02294 * 24 23 22 42 42 H 1.09003 * 109.47208 * 240.02831 * 24 23 22 43 43 H 1.08993 * 109.68023 * 170.50743 * 27 16 15 44 44 H 1.09004 * 109.67986 * 291.02995 * 27 16 15 45 45 H 1.09000 * 109.51039 * 67.61925 * 28 27 16 46 46 H 1.08997 * 109.51316 * 187.72454 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6124 -0.6619 -3.5089 8 7 2.7377 -0.0055 -4.6429 9 14 3.0566 -2.4744 -3.4249 10 1 1.8596 -3.2928 -3.7449 11 1 4.1325 -2.7663 -4.4060 12 1 3.5310 -2.8048 -2.0571 13 6 2.0399 -0.7212 1.2493 14 1 3.1265 -0.7982 1.2073 15 6 1.6256 0.0677 2.5018 16 7 1.9666 -0.7380 3.6851 17 6 2.6700 -0.2087 4.7055 18 8 3.0362 0.9464 4.6549 19 6 3.0016 -1.0521 5.9096 20 7 3.7655 -0.2526 6.8706 21 7 5.1605 -0.1248 6.9220 22 6 5.4568 0.6632 7.9047 23 7 4.2949 1.0630 8.5184 24 6 4.1997 1.9545 9.6770 25 6 3.2567 0.4978 7.8701 26 8 2.0768 0.6351 8.1399 27 6 1.5117 -2.1368 3.7238 28 6 1.9270 -2.8168 2.4141 29 8 1.4705 -2.0310 1.3105 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 2.2490 -1.6318 -1.1524 34 1 3.0617 -0.4626 -5.4346 35 1 0.5522 0.2554 2.4824 36 1 2.1639 1.0150 2.5352 37 1 3.5952 -1.9119 5.5986 38 1 2.0792 -1.3973 6.3766 39 1 6.4547 0.9545 8.1976 40 1 5.2002 2.2585 9.9846 41 1 3.6179 2.8367 9.4098 42 1 3.7101 1.4315 10.4986 43 1 1.9744 -2.6501 4.5667 44 1 0.4269 -2.1674 3.8260 45 1 3.0130 -2.9013 2.3763 46 1 1.4824 -3.8107 2.3630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734176116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:03 Heat of formation + Delta-G solvation = 6.842992 kcal Electronic energy + Delta-G solvation = -30154.633709 eV Core-core repulsion = 25890.313409 eV Total energy + Delta-G solvation = -4264.320300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.74711 -40.49608 -38.59836 -37.54055 -35.73245 -35.61229 -34.71003 -32.65074 -32.16374 -30.67132 -29.11519 -28.80299 -27.70418 -26.60891 -24.78223 -23.46536 -23.18358 -22.20996 -21.55392 -19.87015 -19.56060 -18.08878 -17.95244 -17.55047 -16.78980 -16.59809 -16.42679 -16.05513 -15.79091 -15.51997 -15.20153 -14.89955 -14.69577 -14.40561 -14.25820 -13.77119 -13.68351 -13.27214 -13.24731 -12.86209 -12.79994 -12.73063 -12.57101 -12.38131 -12.22804 -12.13557 -11.60527 -11.29488 -10.94526 -10.86327 -10.77339 -10.65450 -10.58150 -10.36094 -10.07054 -9.96965 -9.87167 -9.55934 -8.91673 -8.88371 -8.64250 -7.24054 -5.73723 -3.08930 1.29208 1.62267 2.31579 2.31908 2.62207 2.84918 3.41555 3.46223 3.48560 3.79829 3.98469 4.07197 4.35281 4.48807 4.56022 4.62944 4.63284 4.73821 4.78812 4.91235 4.94973 5.01494 5.04632 5.19688 5.27511 5.43886 5.53178 5.55114 5.57404 5.64936 5.70986 5.71737 5.88483 6.09540 6.14050 6.23137 6.35262 6.49129 6.75474 7.05181 7.09153 7.24951 7.30039 7.69608 7.86969 8.02579 8.45466 9.24661 9.96945 10.17951 11.44503 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021604 B = 0.002386 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.734979 B =11731.743314 C =11853.885982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.068 0.932 4 N -0.744 5.744 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.886 3.114 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.277 1.277 13 C 0.073 3.927 14 H 0.065 0.935 15 C 0.085 3.915 16 N -0.611 5.611 17 C 0.500 3.500 18 O -0.523 6.523 19 C 0.146 3.854 20 N -0.439 5.439 21 N -0.273 5.273 22 C 0.257 3.743 23 N -0.562 5.562 24 C 0.102 3.898 25 C 0.653 3.347 26 O -0.552 6.552 27 C 0.070 3.930 28 C 0.045 3.955 29 O -0.362 6.362 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.233 0.767 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 -3.500 31.764 32.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.086 0.914 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.203 1.203 13 C 0.013 3.987 14 H 0.083 0.917 15 C -0.038 4.038 16 N -0.347 5.347 17 C 0.285 3.715 18 O -0.398 6.398 19 C 0.020 3.980 20 N -0.259 5.259 21 N -0.094 5.094 22 C -0.042 4.042 23 N -0.291 5.291 24 C -0.040 4.040 25 C 0.352 3.648 26 O -0.425 6.425 27 C -0.053 4.053 28 C -0.033 4.033 29 O -0.280 6.280 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.249 0.751 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.324 -3.258 30.817 31.167 hybrid contribution 0.306 -0.806 0.646 1.078 sum 3.630 -4.064 31.464 31.932 Atomic orbital electron populations 1.22385 0.98083 1.01677 1.00145 1.20171 0.93057 0.94882 0.83885 0.91404 1.42696 1.79513 1.09729 1.06732 1.19077 1.36917 0.95619 0.85586 0.89164 1.24657 1.01431 0.97544 0.95528 1.69707 1.52696 1.35585 1.00229 0.86521 0.78068 0.86867 0.76940 1.21072 1.21912 1.20295 1.23115 0.97671 0.82905 0.94960 0.91667 1.22575 1.02121 0.95777 0.83288 1.48148 1.54710 1.12772 1.19042 1.20857 0.78159 0.88375 0.84070 1.90740 1.52177 1.17470 1.79417 1.21247 0.97133 0.92427 0.87160 1.48202 1.03343 1.45470 1.28850 1.77016 0.92850 1.20443 1.19054 1.25969 0.93494 0.94154 0.90624 1.45866 1.06795 1.45594 1.30822 1.21814 1.04183 0.92940 0.85090 1.16632 0.85251 0.81265 0.81640 1.91090 1.12729 1.67079 1.71583 1.22564 1.01361 0.81474 0.99946 1.22924 0.99571 0.95238 0.85588 1.88079 1.67901 1.25808 1.46186 0.92499 0.94318 0.92363 0.80076 0.93105 0.89762 0.88066 0.85666 0.85746 0.75143 0.88752 0.90407 0.90432 0.89298 0.89787 0.92717 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.06 37.16 0.34 -2.58 16 2 C 0.19 3.69 2.77 -67.93 -0.19 3.50 16 3 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 4 N -0.74 -17.88 4.91 -53.43 -0.26 -18.15 16 5 C -0.24 -6.88 10.41 -15.06 -0.16 -7.04 16 6 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 8 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 9 Si 0.89 22.57 27.74 -169.99 -4.71 17.85 16 10 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 12 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 13 C 0.07 1.18 2.62 -26.36 -0.07 1.11 16 14 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 15 C 0.08 1.21 5.84 -3.31 -0.02 1.19 16 16 N -0.61 -7.47 3.01 -172.02 -0.52 -7.99 16 17 C 0.50 6.75 7.78 -10.99 -0.09 6.66 16 18 O -0.52 -9.35 15.90 5.55 0.09 -9.26 16 19 C 0.15 1.45 5.24 -5.19 -0.03 1.42 16 20 N -0.44 -5.24 3.11 -66.30 -0.21 -5.44 16 21 N -0.27 -2.84 12.53 29.87 0.37 -2.46 16 22 C 0.26 1.70 12.61 -89.12 -1.12 0.58 16 23 N -0.56 -4.72 3.14 -130.11 -0.41 -5.13 16 24 C 0.10 0.43 11.08 59.84 0.66 1.09 16 25 C 0.65 8.38 8.61 -86.73 -0.75 7.64 16 26 O -0.55 -8.82 17.76 5.08 0.09 -8.73 16 27 C 0.07 0.60 6.54 -3.53 -0.02 0.58 16 28 C 0.04 0.47 6.99 37.31 0.26 0.73 16 29 O -0.36 -5.55 9.24 -35.23 -0.33 -5.87 16 30 H 0.06 1.03 7.56 -51.93 -0.39 0.64 16 31 H 0.04 0.58 6.42 -51.93 -0.33 0.24 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.37 8.83 5.44 -40.82 -0.22 8.61 16 34 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 35 H 0.08 1.15 6.28 -51.93 -0.33 0.82 16 36 H 0.10 1.58 7.08 -51.93 -0.37 1.21 16 37 H 0.13 0.87 7.66 -51.93 -0.40 0.47 16 38 H 0.12 0.99 7.98 -51.93 -0.41 0.58 16 39 H 0.23 0.19 8.06 -52.49 -0.42 -0.23 16 40 H 0.09 0.03 8.07 -51.93 -0.42 -0.39 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.45 6.05 -51.93 -0.31 0.14 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -41.52 379.13 -7.25 -48.77 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.58 Total: 4.66 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -1.28 Total: 14.90 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.25 Total: -68.03 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.15 Total: -23.87 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -41.52 -7.25 -48.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734176116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.613 kcal (2) G-P(sol) polarization free energy of solvation -41.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds