Wall clock time and date at job start Tue Mar 31 2020 23:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47305 * 2 1 4 4 N 1.46498 * 109.47133 * 239.99629 * 2 1 3 5 5 C 1.36941 * 120.00032 * 85.00370 * 4 2 1 6 6 H 1.08002 * 119.99440 * 359.97438 * 5 4 2 7 7 C 1.38803 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31626 * 120.00110 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00104 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47416 * 90.00159 * 9 7 5 11 11 H 1.48507 * 109.46946 * 209.99976 * 9 7 5 12 12 H 1.48495 * 109.46898 * 329.99608 * 9 7 5 13 13 C 1.52999 * 109.46834 * 119.99581 * 2 1 3 14 14 H 1.09008 * 109.51146 * 175.10356 * 13 2 1 15 15 C 1.53715 * 109.48832 * 295.36278 * 13 2 1 16 16 N 1.47155 * 108.16365 * 172.40029 * 15 13 2 17 17 C 1.34771 * 120.98171 * 129.43176 * 16 15 13 18 18 O 1.21283 * 119.99837 * 359.71783 * 17 16 15 19 19 C 1.50702 * 120.00108 * 179.71767 * 17 16 15 20 20 N 1.46503 * 109.47122 * 180.02562 * 19 17 16 21 21 N 1.40174 * 126.35057 * 270.02182 * 20 19 17 22 22 C 1.29398 * 108.13862 * 179.97438 * 21 20 19 23 23 N 1.37356 * 108.83241 * 0.26838 * 22 21 20 24 24 C 1.46493 * 125.83567 * 179.73045 * 23 22 21 25 25 C 1.34817 * 108.33356 * 359.56451 * 23 22 21 26 26 O 1.21816 * 126.30819 * 180.16469 * 25 23 22 27 27 C 1.47151 * 118.03609 * 309.16015 * 16 15 13 28 28 C 1.53300 * 108.38468 * 50.78460 * 27 16 15 29 29 O 1.42959 * 109.51545 * 55.00232 * 13 2 1 30 30 H 1.09006 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47041 * 300.00098 * 1 2 3 32 32 H 1.08996 * 109.46879 * 60.00467 * 1 2 3 33 33 H 0.96999 * 119.99668 * 265.00180 * 4 2 1 34 34 H 0.96997 * 120.00260 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.83404 * 52.71817 * 15 13 2 36 36 H 1.09003 * 109.74485 * 292.02536 * 15 13 2 37 37 H 1.09004 * 109.46920 * 60.00365 * 19 17 16 38 38 H 1.08998 * 109.46934 * 300.00489 * 19 17 16 39 39 H 1.08002 * 125.58061 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.46833 * 0.02603 * 24 23 22 41 41 H 1.09000 * 109.47022 * 120.02294 * 24 23 22 42 42 H 1.09003 * 109.47208 * 240.02831 * 24 23 22 43 43 H 1.08993 * 109.68023 * 170.50743 * 27 16 15 44 44 H 1.09004 * 109.67986 * 291.02995 * 27 16 15 45 45 H 1.09000 * 109.51039 * 67.61925 * 28 27 16 46 46 H 1.08997 * 109.51316 * 187.72454 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6124 -0.6619 -3.5089 8 7 2.7377 -0.0055 -4.6429 9 14 3.0566 -2.4744 -3.4249 10 1 1.8596 -3.2928 -3.7449 11 1 4.1325 -2.7663 -4.4060 12 1 3.5310 -2.8048 -2.0571 13 6 2.0399 -0.7212 1.2493 14 1 3.1265 -0.7982 1.2073 15 6 1.6256 0.0677 2.5018 16 7 1.9666 -0.7380 3.6851 17 6 2.6700 -0.2087 4.7055 18 8 3.0362 0.9464 4.6549 19 6 3.0016 -1.0521 5.9096 20 7 3.7655 -0.2526 6.8706 21 7 5.1605 -0.1248 6.9220 22 6 5.4568 0.6632 7.9047 23 7 4.2949 1.0630 8.5184 24 6 4.1997 1.9545 9.6770 25 6 3.2567 0.4978 7.8701 26 8 2.0768 0.6351 8.1399 27 6 1.5117 -2.1368 3.7238 28 6 1.9270 -2.8168 2.4141 29 8 1.4705 -2.0310 1.3105 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 2.2490 -1.6318 -1.1524 34 1 3.0617 -0.4626 -5.4346 35 1 0.5522 0.2554 2.4824 36 1 2.1639 1.0150 2.5352 37 1 3.5952 -1.9119 5.5986 38 1 2.0792 -1.3973 6.3766 39 1 6.4547 0.9545 8.1976 40 1 5.2002 2.2585 9.9846 41 1 3.6179 2.8367 9.4098 42 1 3.7101 1.4315 10.4986 43 1 1.9744 -2.6501 4.5667 44 1 0.4269 -2.1674 3.8260 45 1 3.0130 -2.9013 2.3763 46 1 1.4824 -3.8107 2.3630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734176116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:02 Heat of formation + Delta-G solvation = -24.923643 kcal Electronic energy + Delta-G solvation = -30156.011214 eV Core-core repulsion = 25890.313409 eV Total energy + Delta-G solvation = -4265.697805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.45490 -41.53261 -39.75183 -38.45472 -37.30071 -36.29360 -35.86174 -34.39337 -33.06303 -32.24949 -30.25875 -29.90271 -28.48622 -27.48373 -26.27207 -24.77178 -24.06363 -23.32901 -22.39822 -21.41006 -20.50014 -19.79359 -18.87259 -18.61594 -17.70881 -17.55153 -17.21360 -17.02322 -16.85391 -16.56695 -16.37481 -16.23375 -15.83584 -15.49750 -15.38183 -14.92036 -14.61321 -14.58089 -14.33976 -14.31263 -13.86795 -13.61216 -13.51698 -13.38308 -13.30496 -13.12200 -12.95104 -12.91527 -12.53476 -12.35458 -12.14097 -11.85153 -11.79493 -11.68308 -11.53454 -11.44017 -11.20190 -10.98745 -10.78440 -9.71479 -9.67587 -9.33354 -8.02097 -5.35349 0.60994 1.04816 1.33382 1.37726 1.41299 1.48421 1.49078 1.77556 2.23935 2.48928 2.72628 3.23060 3.29593 3.38045 3.40879 3.82890 3.89232 3.92622 3.98493 4.05228 4.05534 4.09000 4.25178 4.32141 4.37224 4.39904 4.46956 4.57238 4.58736 4.74244 4.77650 4.80842 4.86815 4.93885 4.96153 5.02456 5.17971 5.22406 5.56184 5.64148 5.76214 6.12818 6.17690 6.23857 6.56838 6.83700 6.91822 7.07725 7.83346 8.04515 9.19375 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021604 B = 0.002386 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.734979 B =11731.743314 C =11853.885982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.180 3.820 3 H 0.055 0.945 4 N -0.746 5.746 5 C -0.229 4.229 6 H 0.057 0.943 7 C -0.066 4.066 8 N -0.984 5.984 9 Si 0.957 3.043 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.255 1.255 13 C 0.092 3.908 14 H 0.049 0.951 15 C 0.093 3.907 16 N -0.609 5.609 17 C 0.495 3.505 18 O -0.577 6.577 19 C 0.145 3.855 20 N -0.448 5.448 21 N -0.313 5.313 22 C 0.279 3.721 23 N -0.559 5.559 24 C 0.093 3.907 25 C 0.632 3.368 26 O -0.598 6.598 27 C 0.069 3.931 28 C 0.036 3.964 29 O -0.382 6.382 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.368 0.632 34 H 0.258 0.742 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.289 0.711 40 H 0.142 0.858 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.131 0.869 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -5.943 35.018 35.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.071 3.929 3 H 0.073 0.927 4 N -0.390 5.390 5 C -0.360 4.360 6 H 0.075 0.925 7 C -0.257 4.257 8 N -0.635 5.635 9 Si 0.785 3.215 10 H -0.205 1.205 11 H -0.222 1.222 12 H -0.179 1.179 13 C 0.032 3.968 14 H 0.067 0.933 15 C -0.031 4.031 16 N -0.343 5.343 17 C 0.282 3.718 18 O -0.456 6.456 19 C 0.020 3.980 20 N -0.266 5.266 21 N -0.134 5.134 22 C -0.019 4.019 23 N -0.287 5.287 24 C -0.047 4.047 25 C 0.331 3.669 26 O -0.475 6.475 27 C -0.053 4.053 28 C -0.041 4.041 29 O -0.301 6.301 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.202 0.798 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.177 0.823 38 H 0.162 0.838 39 H 0.304 0.696 40 H 0.160 0.840 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.149 0.851 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.308 -5.731 34.149 34.893 hybrid contribution 0.017 0.048 -0.258 0.263 sum 4.325 -5.683 33.891 34.635 Atomic orbital electron populations 1.22201 0.96468 1.01796 1.00482 1.20370 0.94089 0.94512 0.83900 0.92682 1.42670 1.79855 1.09762 1.06709 1.19033 1.35152 0.94472 0.87298 0.92492 1.25491 1.02386 1.02672 0.95134 1.69888 1.54714 1.37742 1.01128 0.85368 0.77668 0.80682 0.77807 1.20458 1.22241 1.17934 1.22599 0.96405 0.83921 0.93853 0.93268 1.22287 1.02138 0.95025 0.83642 1.48238 1.54130 1.14070 1.17875 1.21583 0.77154 0.88083 0.84933 1.90709 1.54360 1.19948 1.80605 1.21491 0.98677 0.92274 0.85529 1.48411 1.04205 1.45368 1.28647 1.77020 0.91838 1.23140 1.21430 1.27154 0.94736 0.91484 0.88478 1.46144 1.06297 1.45083 1.31138 1.22168 1.07066 0.91754 0.83695 1.17059 0.85570 0.81874 0.82427 1.91029 1.14707 1.68766 1.73013 1.22863 1.02613 0.79243 1.00547 1.23296 1.00014 0.95962 0.84827 1.88028 1.68138 1.25216 1.48687 0.92361 0.91195 0.94791 0.79839 0.93371 0.88947 0.90143 0.82304 0.83773 0.69578 0.83960 0.91648 0.90208 0.85074 0.88407 0.92674 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.06 71.98 0.65 -4.66 16 2 C 0.18 7.04 2.77 44.99 0.12 7.17 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 N -0.75 -36.07 4.91 -322.95 -1.58 -37.65 16 5 C -0.23 -13.37 10.41 84.03 0.87 -12.50 16 6 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 7 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 8 N -0.98 -64.37 13.97 21.65 0.30 -64.06 16 9 Si 0.96 46.89 27.74 68.60 1.90 48.79 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 12 H -0.25 -11.38 6.52 99.48 0.65 -10.73 16 13 C 0.09 2.91 2.62 30.83 0.08 2.99 16 14 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 15 C 0.09 2.59 5.84 86.50 0.50 3.09 16 16 N -0.61 -13.82 3.01 -816.53 -2.46 -16.28 16 17 C 0.49 12.88 7.78 87.66 0.68 13.56 16 18 O -0.58 -21.00 15.90 -3.04 -0.05 -21.05 16 19 C 0.15 2.58 5.24 85.63 0.45 3.03 16 20 N -0.45 -10.10 3.11 -481.76 -1.50 -11.60 16 21 N -0.31 -5.89 12.53 -59.42 -0.74 -6.63 16 22 C 0.28 2.85 12.61 179.83 2.27 5.12 16 23 N -0.56 -8.34 3.14 -683.69 -2.15 -10.49 16 24 C 0.09 0.58 11.08 127.77 1.42 2.00 16 25 C 0.63 15.86 8.61 178.99 1.54 17.40 16 26 O -0.60 -19.40 17.76 -4.72 -0.08 -19.48 16 27 C 0.07 0.92 6.54 86.36 0.56 1.49 16 28 C 0.04 0.62 6.99 72.08 0.50 1.13 16 29 O -0.38 -10.84 9.24 -148.98 -1.38 -12.21 16 30 H 0.06 2.04 7.56 -2.38 -0.02 2.03 16 31 H 0.07 2.01 6.42 -2.39 -0.02 2.00 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.37 17.36 5.44 -92.71 -0.50 16.86 16 34 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 35 H 0.09 2.41 6.28 -2.39 -0.02 2.39 16 36 H 0.08 2.60 7.08 -2.39 -0.02 2.58 16 37 H 0.16 1.64 7.66 -2.38 -0.02 1.62 16 38 H 0.14 1.93 7.98 -2.39 -0.02 1.91 16 39 H 0.29 -1.00 8.06 -2.91 -0.02 -1.03 16 40 H 0.14 -0.53 8.07 -2.39 -0.02 -0.55 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 42 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.13 0.68 6.05 -2.39 -0.01 0.66 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -97.08 379.13 2.83 -94.25 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.45 Total: 20.10 kcal Atomic # 6 Polarization: 26.20 SS G_CDS: 10.13 Total: 36.32 kcal Atomic # 7 Polarization: -138.59 SS G_CDS: -8.14 Total: -146.72 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -1.51 Total: -52.74 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.90 Total: 48.79 kcal Total: -97.08 2.83 -94.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734176116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.327 kcal (2) G-P(sol) polarization free energy of solvation -97.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds