Wall clock time and date at job start Tue Mar 31 2020 23:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 C 1.53003 * 109.47305 * 239.99985 * 2 1 3 5 5 N 1.46497 * 109.46873 * 185.00172 * 4 2 1 6 6 C 1.46502 * 119.99801 * 269.99294 * 5 4 2 7 7 C 1.34770 * 120.00198 * 90.00045 * 5 4 2 8 8 O 1.21514 * 120.00022 * 2.25232 * 7 5 4 9 9 C 1.48174 * 120.00117 * 182.52756 * 7 5 4 10 10 C 1.39104 * 119.67070 * 172.39043 * 9 7 5 11 11 C 1.39721 * 118.91706 * 179.73711 * 10 9 7 12 12 C 1.48369 * 120.87513 * 180.25521 * 11 10 9 13 13 C 1.39358 * 120.11997 * 0.02562 * 12 11 10 14 14 C 1.38007 * 119.87559 * 179.69625 * 13 12 11 15 15 C 1.38329 * 120.12205 * 0.60042 * 14 13 12 16 16 C 1.38316 * 120.24590 * 359.67782 * 15 14 13 17 17 C 1.38013 * 120.12319 * 0.02562 * 16 15 14 18 18 C 1.39731 * 118.25501 * 0.52221 * 11 10 9 19 19 C 1.38318 * 119.21546 * 359.73787 * 18 11 10 20 20 N 1.31577 * 121.02765 * 359.97438 * 19 18 11 21 21 N 1.46496 * 109.46970 * 119.99680 * 2 1 3 22 22 C 1.36934 * 120.00336 * 275.00056 * 21 2 1 23 23 H 1.08002 * 120.00076 * 0.02562 * 22 21 2 24 24 C 1.38814 * 120.00357 * 179.97438 * 22 21 2 25 25 N 1.31624 * 119.99718 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00063 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47247 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.46839 * 120.00418 * 26 24 22 29 29 H 1.48500 * 109.47009 * 240.00434 * 26 24 22 30 30 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47004 * 300.00387 * 1 2 3 32 32 H 1.09000 * 109.46940 * 60.00210 * 1 2 3 33 33 H 1.08995 * 109.47009 * 64.99540 * 4 2 1 34 34 H 1.09008 * 109.46623 * 305.00138 * 4 2 1 35 35 H 1.09001 * 109.47365 * 263.72870 * 6 5 4 36 36 H 1.09002 * 109.46817 * 23.72845 * 6 5 4 37 37 H 1.09000 * 109.46852 * 143.72634 * 6 5 4 38 38 H 1.07995 * 120.53838 * 359.97438 * 10 9 7 39 39 H 1.07998 * 120.05798 * 0.02562 * 13 12 11 40 40 H 1.08010 * 119.93937 * 180.29725 * 14 13 12 41 41 H 1.08003 * 119.87245 * 179.69495 * 15 14 13 42 42 H 1.08004 * 119.93787 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.06025 * 180.02562 * 17 16 15 44 44 H 1.08005 * 120.39130 * 179.71174 * 18 11 10 45 45 H 1.08002 * 119.48757 * 180.02562 * 19 18 11 46 46 H 0.96999 * 120.00104 * 95.00218 * 21 2 1 47 47 H 0.97005 * 119.99445 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0758 -1.8986 -0.6115 8 8 3.3846 -2.7975 -0.1747 9 6 5.5513 -1.9785 -0.5020 10 6 6.1325 -3.0057 0.2343 11 6 7.5255 -3.0692 0.3225 12 6 8.1913 -4.1493 1.0915 13 6 7.4283 -5.1196 1.7384 14 6 8.0529 -6.1257 2.4471 15 6 9.4334 -6.1650 2.5264 16 6 10.1955 -5.2012 1.8911 17 6 9.5815 -4.1941 1.1746 18 6 8.2750 -2.0854 -0.3278 19 6 7.6190 -1.0942 -1.0350 20 7 6.3053 -1.0661 -1.1034 21 7 2.0183 -0.6905 1.1962 22 6 2.1491 -0.0074 2.3757 23 1 1.8919 1.0404 2.4243 24 6 2.6113 -0.6619 3.5093 25 7 2.9243 -1.9390 3.4502 26 14 2.7903 0.2703 5.1182 27 1 2.3764 1.6826 4.9208 28 1 1.9292 -0.3575 6.1524 29 1 4.2072 0.2265 5.5606 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -0.1584 -2.1369 34 1 1.6054 -1.7199 -1.2951 35 1 4.6349 -0.0441 -2.7714 36 1 3.7674 1.1644 -1.7940 37 1 5.2216 0.3708 -1.1429 38 1 5.5172 -3.7442 0.7264 39 1 6.3503 -5.0873 1.6808 40 1 7.4627 -6.8810 2.9449 41 1 9.9179 -6.9513 3.0862 42 1 11.2730 -5.2369 1.9559 43 1 10.1776 -3.4423 0.6786 44 1 9.3539 -2.0987 -0.2784 45 1 8.1940 -0.3319 -1.5397 46 1 2.2490 -1.6317 1.1527 47 1 3.2476 -2.3962 4.2423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734350679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:24 Heat of formation + Delta-G solvation = 62.199550 kcal Electronic energy + Delta-G solvation = -29375.534116 eV Core-core repulsion = 25524.463519 eV Total energy + Delta-G solvation = -3851.070596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.63742 -39.28585 -38.40136 -35.90972 -34.46842 -33.52519 -31.94093 -31.53752 -30.73374 -29.66112 -28.56712 -26.80998 -25.96892 -24.21669 -23.94050 -23.43884 -22.03513 -21.63421 -20.04532 -19.16012 -17.64189 -17.23419 -16.70254 -16.38220 -15.78861 -15.37228 -15.24922 -15.18637 -14.60110 -14.51451 -14.17904 -13.80357 -13.71607 -13.53094 -13.37379 -13.17689 -12.97615 -12.65767 -12.41146 -12.15778 -12.06433 -11.98044 -11.77549 -11.39693 -11.28992 -11.14192 -10.93321 -10.79002 -10.60227 -10.37766 -10.28398 -9.97230 -9.67040 -9.48136 -9.06095 -9.03379 -8.95766 -8.78139 -8.41671 -7.93231 -6.76654 -5.58651 -2.87170 0.49077 0.99317 1.30190 1.81517 3.17939 3.45122 3.48982 3.54163 3.56273 3.77409 4.21991 4.30859 4.40217 4.59320 4.69826 4.83615 4.89121 4.97193 5.07024 5.15052 5.27712 5.39558 5.47847 5.57322 5.65111 5.67678 5.69666 5.77640 5.80804 5.97741 5.98584 6.05231 6.06345 6.11522 6.15749 6.32562 6.35185 6.40161 6.41914 6.50106 6.55918 6.71177 6.77025 6.85163 6.89884 7.07157 7.24535 7.80511 7.82492 7.97748 8.58150 8.77417 9.70840 10.33840 10.72320 11.61994 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.003973 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.306287 B = 7046.139198 C = 8710.462410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.044 0.956 4 C 0.108 3.892 5 N -0.588 5.588 6 C 0.082 3.918 7 C 0.576 3.424 8 O -0.514 6.514 9 C 0.102 3.898 10 C -0.093 4.093 11 C -0.009 4.009 12 C -0.050 4.050 13 C -0.096 4.096 14 C -0.117 4.117 15 C -0.115 4.115 16 C -0.124 4.124 17 C -0.105 4.105 18 C -0.154 4.154 19 C 0.090 3.910 20 N -0.453 5.453 21 N -0.721 5.721 22 C -0.235 4.235 23 H 0.065 0.935 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.897 3.103 27 H -0.282 1.282 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.153 0.847 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.161 0.839 46 H 0.397 0.603 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.215 -3.277 -10.920 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.015 4.015 5 N -0.319 5.319 6 C -0.061 4.061 7 C 0.362 3.638 8 O -0.388 6.388 9 C -0.035 4.035 10 C -0.114 4.114 11 C -0.017 4.017 12 C -0.050 4.050 13 C -0.114 4.114 14 C -0.135 4.135 15 C -0.134 4.134 16 C -0.142 4.142 17 C -0.123 4.123 18 C -0.173 4.173 19 C -0.068 4.068 20 N -0.166 5.166 21 N -0.367 5.367 22 C -0.367 4.367 23 H 0.083 0.917 24 C -0.209 4.209 25 N -0.569 5.569 26 Si 0.729 3.271 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.222 1.222 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.170 0.830 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.154 0.846 45 H 0.178 0.822 46 H 0.235 0.765 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.399 -2.991 -11.037 17.615 hybrid contribution 0.620 -0.193 1.616 1.742 sum 14.019 -3.184 -9.421 17.188 Atomic orbital electron populations 1.22402 0.99043 1.00989 0.99931 1.20655 0.92018 0.95631 0.87452 0.93813 1.21912 0.79111 1.02169 0.98352 1.47382 1.06694 1.20733 1.57102 1.22249 0.96240 0.88904 0.98673 1.17620 0.85556 0.82615 0.78035 1.90777 1.62685 1.38836 1.46527 1.21194 0.94642 0.91874 0.95811 1.22221 0.94022 0.98607 0.96542 1.19095 0.92772 0.94222 0.95620 1.18668 0.93179 0.94786 0.98415 1.21460 1.00788 0.93497 0.95659 1.21159 0.94756 0.98580 0.99029 1.21258 0.94096 0.98793 0.99208 1.21053 0.99856 0.95103 0.98186 1.21192 0.93418 0.98593 0.99103 1.22293 1.01148 0.95487 0.98413 1.22770 0.90455 0.97159 0.96425 1.68072 1.06568 1.22788 1.19186 1.42692 1.77628 1.11649 1.04704 1.19248 1.36174 0.93640 0.87605 0.91677 1.24707 1.02665 0.95919 0.97635 1.69750 1.50755 1.08320 1.28048 0.86259 0.77147 0.78862 0.84838 1.20738 1.22005 1.22189 0.93345 0.92659 0.94576 0.90902 0.90204 0.93459 0.92818 0.87806 0.82983 0.84838 0.85507 0.85987 0.85862 0.85690 0.84552 0.82189 0.76477 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.49 37.16 0.35 -2.73 16 2 C 0.15 3.25 3.20 -67.93 -0.22 3.03 16 3 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 4 C 0.11 1.95 5.12 -4.04 -0.02 1.93 16 5 N -0.59 -10.97 2.77 -182.57 -0.51 -11.48 16 6 C 0.08 1.24 9.32 59.85 0.56 1.80 16 7 C 0.58 12.15 6.89 -12.18 -0.08 12.07 16 8 O -0.51 -12.50 13.79 5.35 0.07 -12.42 16 9 C 0.10 1.90 6.62 -83.06 -0.55 1.35 16 10 C -0.09 -1.65 9.02 -38.71 -0.35 -2.00 16 11 C -0.01 -0.13 5.91 -104.61 -0.62 -0.75 16 12 C -0.05 -0.67 5.88 -104.90 -0.62 -1.29 16 13 C -0.10 -1.30 9.45 -39.25 -0.37 -1.67 16 14 C -0.12 -1.35 10.03 -39.63 -0.40 -1.75 16 15 C -0.12 -1.15 10.04 -39.52 -0.40 -1.55 16 16 C -0.12 -1.20 10.03 -39.63 -0.40 -1.60 16 17 C -0.10 -1.14 9.45 -39.25 -0.37 -1.51 16 18 C -0.15 -1.82 9.51 -38.99 -0.37 -2.19 16 19 C 0.09 1.09 11.17 -17.63 -0.20 0.90 16 20 N -0.45 -7.03 6.01 -9.88 -0.06 -7.09 16 21 N -0.72 -19.31 4.52 -53.42 -0.24 -19.55 16 22 C -0.23 -6.85 9.93 -15.06 -0.15 -7.00 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.92 -28.99 13.06 55.49 0.72 -28.27 16 26 Si 0.90 23.34 29.55 -169.99 -5.02 18.31 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 29 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 34 H 0.08 1.54 7.39 -51.92 -0.38 1.16 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.73 8.02 -51.93 -0.42 0.31 16 37 H 0.10 1.67 5.24 -52.26 -0.27 1.40 16 38 H 0.15 2.86 5.94 -52.49 -0.31 2.55 16 39 H 0.13 1.90 6.30 -52.49 -0.33 1.57 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.13 1.05 6.29 -52.49 -0.33 0.72 16 44 H 0.14 1.14 6.33 -52.48 -0.33 0.81 16 45 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 46 H 0.40 11.52 5.12 -40.82 -0.21 11.32 16 47 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -35.65 385.29 -9.87 -45.52 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -6.35 Total: 12.62 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -4.29 Total: -3.45 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.08 Total: -66.38 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.65 -9.87 -45.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734350679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.720 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds