Wall clock time and date at job start Tue Mar 31 2020 23:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 C 1.53003 * 109.47305 * 239.99985 * 2 1 3 5 5 N 1.46497 * 109.46873 * 185.00172 * 4 2 1 6 6 C 1.46502 * 119.99801 * 269.99294 * 5 4 2 7 7 C 1.34770 * 120.00198 * 90.00045 * 5 4 2 8 8 O 1.21514 * 120.00022 * 2.25232 * 7 5 4 9 9 C 1.48174 * 120.00117 * 182.52756 * 7 5 4 10 10 C 1.39104 * 119.67070 * 172.39043 * 9 7 5 11 11 C 1.39721 * 118.91706 * 179.73711 * 10 9 7 12 12 C 1.48369 * 120.87513 * 180.25521 * 11 10 9 13 13 C 1.39358 * 120.11997 * 0.02562 * 12 11 10 14 14 C 1.38007 * 119.87559 * 179.69625 * 13 12 11 15 15 C 1.38329 * 120.12205 * 0.60042 * 14 13 12 16 16 C 1.38316 * 120.24590 * 359.67782 * 15 14 13 17 17 C 1.38013 * 120.12319 * 0.02562 * 16 15 14 18 18 C 1.39731 * 118.25501 * 0.52221 * 11 10 9 19 19 C 1.38318 * 119.21546 * 359.73787 * 18 11 10 20 20 N 1.31577 * 121.02765 * 359.97438 * 19 18 11 21 21 N 1.46496 * 109.46970 * 119.99680 * 2 1 3 22 22 C 1.36934 * 120.00336 * 275.00056 * 21 2 1 23 23 H 1.08002 * 120.00076 * 0.02562 * 22 21 2 24 24 C 1.38814 * 120.00357 * 179.97438 * 22 21 2 25 25 N 1.31624 * 119.99718 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00063 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47247 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.46839 * 120.00418 * 26 24 22 29 29 H 1.48500 * 109.47009 * 240.00434 * 26 24 22 30 30 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47004 * 300.00387 * 1 2 3 32 32 H 1.09000 * 109.46940 * 60.00210 * 1 2 3 33 33 H 1.08995 * 109.47009 * 64.99540 * 4 2 1 34 34 H 1.09008 * 109.46623 * 305.00138 * 4 2 1 35 35 H 1.09001 * 109.47365 * 263.72870 * 6 5 4 36 36 H 1.09002 * 109.46817 * 23.72845 * 6 5 4 37 37 H 1.09000 * 109.46852 * 143.72634 * 6 5 4 38 38 H 1.07995 * 120.53838 * 359.97438 * 10 9 7 39 39 H 1.07998 * 120.05798 * 0.02562 * 13 12 11 40 40 H 1.08010 * 119.93937 * 180.29725 * 14 13 12 41 41 H 1.08003 * 119.87245 * 179.69495 * 15 14 13 42 42 H 1.08004 * 119.93787 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.06025 * 180.02562 * 17 16 15 44 44 H 1.08005 * 120.39130 * 179.71174 * 18 11 10 45 45 H 1.08002 * 119.48757 * 180.02562 * 19 18 11 46 46 H 0.96999 * 120.00104 * 95.00218 * 21 2 1 47 47 H 0.97005 * 119.99445 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0758 -1.8986 -0.6115 8 8 3.3846 -2.7975 -0.1747 9 6 5.5513 -1.9785 -0.5020 10 6 6.1325 -3.0057 0.2343 11 6 7.5255 -3.0692 0.3225 12 6 8.1913 -4.1493 1.0915 13 6 7.4283 -5.1196 1.7384 14 6 8.0529 -6.1257 2.4471 15 6 9.4334 -6.1650 2.5264 16 6 10.1955 -5.2012 1.8911 17 6 9.5815 -4.1941 1.1746 18 6 8.2750 -2.0854 -0.3278 19 6 7.6190 -1.0942 -1.0350 20 7 6.3053 -1.0661 -1.1034 21 7 2.0183 -0.6905 1.1962 22 6 2.1491 -0.0074 2.3757 23 1 1.8919 1.0404 2.4243 24 6 2.6113 -0.6619 3.5093 25 7 2.9243 -1.9390 3.4502 26 14 2.7903 0.2703 5.1182 27 1 2.3764 1.6826 4.9208 28 1 1.9292 -0.3575 6.1524 29 1 4.2072 0.2265 5.5606 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -0.1584 -2.1369 34 1 1.6054 -1.7199 -1.2951 35 1 4.6349 -0.0441 -2.7714 36 1 3.7674 1.1644 -1.7940 37 1 5.2216 0.3708 -1.1429 38 1 5.5172 -3.7442 0.7264 39 1 6.3503 -5.0873 1.6808 40 1 7.4627 -6.8810 2.9449 41 1 9.9179 -6.9513 3.0862 42 1 11.2730 -5.2369 1.9559 43 1 10.1776 -3.4423 0.6786 44 1 9.3539 -2.0987 -0.2784 45 1 8.1940 -0.3319 -1.5397 46 1 2.2490 -1.6317 1.1527 47 1 3.2476 -2.3962 4.2423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734350679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:23 Heat of formation + Delta-G solvation = 40.481888 kcal Electronic energy + Delta-G solvation = -29376.475864 eV Core-core repulsion = 25524.463519 eV Total energy + Delta-G solvation = -3852.012345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.84550 -40.48990 -39.53404 -37.61610 -36.08002 -34.72301 -33.83449 -32.67651 -31.72235 -30.72501 -30.47686 -28.18396 -27.33017 -25.78498 -25.25390 -24.91659 -23.09185 -22.61916 -21.59406 -20.58921 -19.33894 -18.62432 -18.10613 -17.54716 -16.93227 -16.78607 -16.63485 -16.54465 -16.19709 -15.58053 -15.49591 -15.28639 -15.16322 -14.81402 -14.50197 -14.32222 -14.20417 -14.07089 -13.76444 -13.75016 -13.52688 -13.24432 -13.09370 -12.94435 -12.88253 -12.72614 -12.41619 -12.18719 -12.15269 -11.88439 -11.82758 -11.61697 -11.39466 -11.19444 -10.96905 -10.23545 -10.17558 -9.92444 -9.44847 -9.34756 -8.92686 -7.86499 -5.15685 -0.54351 -0.19848 0.43425 0.83300 1.39190 1.41103 1.50744 1.81215 2.12525 2.54881 2.74575 3.04653 3.14018 3.38382 3.43072 3.62153 3.90348 3.92320 3.98523 4.01882 4.05855 4.17178 4.23470 4.38636 4.48032 4.49487 4.52787 4.56011 4.60603 4.67285 4.71989 4.77825 4.85888 4.97043 5.03120 5.04259 5.07622 5.09794 5.24965 5.25883 5.46131 5.48754 5.53370 5.54768 5.58736 5.65149 5.82485 6.01547 6.31640 6.44221 6.74272 7.25334 7.40036 8.24046 8.47027 9.35018 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.003973 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.306287 B = 7046.139198 C = 8710.462410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.048 0.952 4 C 0.111 3.889 5 N -0.588 5.588 6 C 0.081 3.919 7 C 0.561 3.439 8 O -0.567 6.567 9 C 0.072 3.928 10 C -0.124 4.124 11 C -0.014 4.014 12 C -0.075 4.075 13 C -0.128 4.128 14 C -0.131 4.131 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.101 4.101 18 C -0.135 4.135 19 C 0.095 3.905 20 N -0.457 5.457 21 N -0.739 5.739 22 C -0.233 4.233 23 H 0.072 0.928 24 C -0.079 4.079 25 N -0.960 5.960 26 Si 0.965 3.035 27 H -0.264 1.264 28 H -0.295 1.295 29 H -0.298 1.298 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.153 0.847 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.185 0.815 45 H 0.213 0.787 46 H 0.383 0.617 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.750 -0.877 -12.280 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.066 0.934 4 C -0.012 4.012 5 N -0.318 5.318 6 C -0.060 4.060 7 C 0.348 3.652 8 O -0.446 6.446 9 C -0.063 4.063 10 C -0.145 4.145 11 C -0.022 4.022 12 C -0.075 4.075 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.129 4.129 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.154 4.154 19 C -0.063 4.063 20 N -0.170 5.170 21 N -0.383 5.383 22 C -0.366 4.366 23 H 0.090 0.910 24 C -0.271 4.271 25 N -0.611 5.611 26 Si 0.795 3.205 27 H -0.188 1.188 28 H -0.223 1.223 29 H -0.226 1.226 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.141 0.859 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.179 0.821 43 H 0.176 0.824 44 H 0.202 0.798 45 H 0.229 0.771 46 H 0.219 0.781 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 16.901 -0.519 -12.451 20.999 hybrid contribution -0.376 -0.940 1.958 2.204 sum 16.524 -1.458 -10.493 19.629 Atomic orbital electron populations 1.22233 0.97075 1.00623 1.01311 1.20980 0.93340 0.95460 0.86686 0.93430 1.21933 0.79052 1.01477 0.98736 1.47580 1.07220 1.20764 1.56248 1.22417 0.95757 0.88505 0.99346 1.18217 0.86892 0.82602 0.77465 1.90724 1.64167 1.40818 1.48875 1.20879 0.93724 0.93594 0.98151 1.22094 0.95786 0.98642 0.98020 1.19355 0.91466 0.95469 0.95912 1.18804 0.94655 0.94706 0.99316 1.21448 0.99739 0.95560 0.97923 1.21354 0.96205 0.98278 0.99047 1.21662 0.93106 0.99533 0.98644 1.21542 1.01724 0.93877 0.96562 1.21559 0.91980 0.99525 0.98778 1.22819 1.03252 0.93433 0.95886 1.23689 0.89420 0.97829 0.95389 1.68058 1.08138 1.21696 1.19068 1.42961 1.78057 1.11298 1.05956 1.19633 1.34455 0.93891 0.88593 0.91042 1.25536 1.03579 0.96811 1.01206 1.69966 1.52581 1.10133 1.28425 0.85185 0.76521 0.78383 0.80448 1.18785 1.22257 1.22575 0.94605 0.94430 0.89906 0.85925 0.92211 0.91144 0.90922 0.88635 0.86638 0.88015 0.84809 0.82973 0.82051 0.82414 0.79782 0.77084 0.78138 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 9.49 71.98 0.68 -4.97 16 2 C 0.14 6.12 3.20 45.00 0.14 6.26 16 3 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 4 C 0.11 4.01 5.12 86.38 0.44 4.45 16 5 N -0.59 -22.34 2.77 -849.82 -2.36 -24.70 16 6 C 0.08 2.33 9.32 127.77 1.19 3.52 16 7 C 0.56 25.45 6.89 86.88 0.60 26.05 16 8 O -0.57 -30.66 13.79 -3.76 -0.05 -30.71 16 9 C 0.07 2.85 6.62 41.85 0.28 3.13 16 10 C -0.12 -4.88 9.02 22.84 0.21 -4.68 16 11 C -0.01 -0.43 5.91 -19.86 -0.12 -0.54 16 12 C -0.07 -2.04 5.88 -20.04 -0.12 -2.16 16 13 C -0.13 -3.89 9.45 22.48 0.21 -3.68 16 14 C -0.13 -3.16 10.03 22.24 0.22 -2.94 16 15 C -0.11 -2.01 10.04 22.31 0.22 -1.79 16 16 C -0.12 -1.90 10.03 22.23 0.22 -1.67 16 17 C -0.10 -1.90 9.45 22.48 0.21 -1.69 16 18 C -0.13 -2.81 9.51 22.65 0.22 -2.60 16 19 C 0.10 2.03 11.17 84.75 0.95 2.97 16 20 N -0.46 -13.87 6.01 -185.18 -1.11 -14.98 16 21 N -0.74 -41.18 4.52 -322.93 -1.46 -42.64 16 22 C -0.23 -13.97 9.93 84.03 0.83 -13.13 16 23 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 24 C -0.08 -4.90 5.50 84.86 0.47 -4.44 16 25 N -0.96 -64.24 13.06 21.65 0.28 -63.96 16 26 Si 0.96 49.49 29.55 68.60 2.03 51.51 16 27 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 28 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 29 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.12 3.16 8.07 -2.39 -0.02 3.14 16 34 H 0.06 2.41 7.39 -2.38 -0.02 2.39 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.78 8.02 -2.39 -0.02 1.76 16 37 H 0.10 2.96 5.24 -3.04 -0.02 2.94 16 38 H 0.12 5.23 5.94 -2.91 -0.02 5.22 16 39 H 0.10 3.60 6.30 -2.91 -0.02 3.58 16 40 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.16 1.82 6.29 -2.91 -0.02 1.80 16 44 H 0.19 2.02 6.33 -2.91 -0.02 2.00 16 45 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.38 23.75 5.12 -92.71 -0.47 23.28 16 47 H 0.24 15.83 8.31 -92.70 -0.77 15.06 16 Total: -1.00 -86.79 385.29 4.71 -82.08 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: 0.52 Total: 41.28 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.86 Total: 2.11 kcal Atomic # 7 Polarization: -141.62 SS G_CDS: -4.65 Total: -146.27 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.03 Total: 51.51 kcal Total: -86.79 4.71 -82.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734350679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.567 kcal (2) G-P(sol) polarization free energy of solvation -86.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds