Wall clock time and date at job start Tue Mar 31 2020 22:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.87583 * 2 1 4 4 C 1.54323 * 109.88106 * 238.98165 * 2 1 3 5 5 H 1.09003 * 110.72163 * 144.07807 * 4 2 1 6 6 N 1.46500 * 110.71881 * 20.98987 * 4 2 1 7 7 C 1.36942 * 120.00285 * 154.99937 * 6 4 2 8 8 H 1.07998 * 119.99706 * 359.97438 * 7 6 4 9 9 C 1.38814 * 120.00289 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99896 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00007 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47095 * 60.00098 * 11 9 7 13 13 H 1.48503 * 109.47039 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47402 * 299.99910 * 11 9 7 15 15 C 1.55147 * 102.94784 * 262.62439 * 4 2 1 16 16 C 1.54914 * 101.57928 * 324.49777 * 15 4 2 17 17 N 1.47027 * 110.00938 * 121.10100 * 2 1 3 18 18 C 1.34773 * 125.64711 * 300.52153 * 17 2 1 19 19 O 1.21282 * 120.00056 * 0.02562 * 18 17 2 20 20 C 1.50703 * 119.99998 * 179.97438 * 18 17 2 21 21 C 1.52994 * 109.47092 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.47038 * 179.97438 * 21 20 18 23 23 N 1.46500 * 109.47226 * 180.02562 * 22 21 20 24 24 C 1.36372 * 125.96549 * 269.69682 * 23 22 21 25 25 O 1.35636 * 125.98796 * 0.03004 * 24 23 22 26 26 N 1.30906 * 108.02659 * 179.88484 * 24 23 22 27 27 N 1.40115 * 107.93701 * 0.37265 * 26 24 23 28 28 C 1.30912 * 107.93911 * 359.76311 * 27 26 24 29 29 O 1.35632 * 125.98585 * 180.02562 * 28 27 26 30 30 H 1.08994 * 109.47215 * 180.70406 * 1 2 3 31 31 H 1.09001 * 109.46642 * 300.69909 * 1 2 3 32 32 H 1.09002 * 109.46991 * 60.69928 * 1 2 3 33 33 H 0.96997 * 120.00207 * 334.99268 * 6 4 2 34 34 H 0.96994 * 119.99937 * 180.02562 * 10 9 7 35 35 H 1.08997 * 111.00659 * 82.56898 * 15 4 2 36 36 H 1.08996 * 111.00764 * 206.42646 * 15 4 2 37 37 H 1.09000 * 110.36623 * 155.84512 * 16 15 4 38 38 H 1.08996 * 110.37094 * 278.16884 * 16 15 4 39 39 H 1.08992 * 109.47116 * 300.00626 * 20 18 17 40 40 H 1.09004 * 109.46801 * 60.00288 * 20 18 17 41 41 H 1.08992 * 109.47673 * 300.00312 * 21 20 18 42 42 H 1.09004 * 109.47040 * 60.00461 * 21 20 18 43 43 H 1.09002 * 109.47208 * 300.00635 * 22 21 20 44 44 H 1.09004 * 109.46791 * 60.00355 * 22 21 20 45 45 H 0.96698 * 113.99287 * 90.00156 * 25 24 23 46 46 H 0.96696 * 113.99542 * 269.97245 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 2.9624 -0.2775 -1.6222 6 7 1.0280 -0.8026 -2.2872 7 6 1.3926 -0.9373 -3.6003 8 1 2.4372 -1.0029 -3.8666 9 6 0.4196 -0.9897 -4.5890 10 7 -0.8534 -0.9103 -4.2643 11 14 0.9171 -1.1728 -6.3801 12 1 1.6760 -2.4371 -6.5563 13 1 -0.2996 -1.2037 -7.2311 14 1 1.7701 -0.0240 -6.7769 15 6 2.3556 -2.1674 -0.6946 16 6 2.8618 -1.8473 0.7341 17 7 2.0331 -0.7136 1.1829 18 6 1.7793 -0.3853 2.4652 19 8 1.0805 0.5729 2.7189 20 6 2.3627 -1.2097 3.5838 21 6 1.9245 -0.6270 4.9288 22 6 2.5163 -1.4643 6.0644 23 7 2.0963 -0.9067 7.3524 24 6 2.7635 0.0412 8.0707 25 8 3.9317 0.6331 7.7175 26 7 2.0775 0.2821 9.1593 27 7 0.9425 -0.5394 9.1446 28 6 0.9727 -1.2493 8.0451 29 8 0.0482 -2.1647 7.6619 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3632 0.5247 0.8837 32 1 -0.3633 0.5029 -0.8962 33 1 0.0899 -0.7434 -2.0481 34 1 -1.5333 -0.9473 -4.9551 35 1 1.4503 -2.7735 -0.6617 36 1 3.1310 -2.6578 -1.2830 37 1 2.7164 -2.7062 1.3893 38 1 3.9134 -1.5620 0.7090 39 1 2.0095 -2.2374 3.5001 40 1 3.4506 -1.1929 3.5181 41 1 2.2781 0.4006 5.0122 42 1 0.8366 -0.6434 4.9948 43 1 2.1624 -2.4918 5.9808 44 1 3.6043 -1.4483 5.9987 45 1 3.8218 1.4391 7.1947 46 1 0.2320 -3.0624 7.9710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734394292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:15 Heat of formation + Delta-G solvation = -37.345039 kcal Electronic energy + Delta-G solvation = -29308.175254 eV Core-core repulsion = 25041.938817 eV Total energy + Delta-G solvation = -4266.236437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.29515 -41.28746 -39.11395 -39.01695 -38.02962 -36.63547 -35.91607 -33.79343 -33.10043 -32.04973 -30.69580 -30.67111 -28.07520 -26.77219 -25.43886 -24.23292 -23.82273 -23.24728 -22.60947 -20.92010 -20.00562 -19.72431 -19.57242 -19.43945 -18.16511 -17.70999 -17.37492 -17.14692 -16.62175 -16.50292 -16.33624 -15.97474 -15.63404 -15.19585 -14.93438 -14.63500 -14.51234 -13.97438 -13.86390 -13.64390 -13.57093 -13.35802 -13.31744 -13.11853 -12.94344 -12.92651 -12.86403 -12.78907 -12.50968 -12.32330 -12.12525 -12.06028 -11.92884 -11.59869 -11.51586 -11.49486 -11.07489 -10.90416 -10.75743 -10.54610 -9.62768 -9.01190 -7.93986 -5.22940 0.52683 0.75499 1.15980 1.49229 1.51667 1.57633 1.68302 1.99581 2.23485 2.57768 2.90803 3.35790 3.47137 3.52393 3.78564 3.83762 3.89599 3.93836 4.06844 4.16398 4.21958 4.30305 4.37837 4.40594 4.43797 4.44056 4.58162 4.64234 4.67080 4.70468 4.85761 4.88611 5.02935 5.07649 5.16295 5.21709 5.28978 5.34663 5.36672 5.51875 5.55548 6.25273 6.27545 6.47694 6.65210 6.81816 7.21354 7.34720 8.09323 8.31838 9.29410 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029778 B = 0.001896 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.075446 B =14766.968142 C =15007.289293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 H 0.059 0.941 4 C 0.163 3.837 5 H 0.068 0.932 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.082 0.918 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.275 1.275 13 H -0.301 1.301 14 H -0.279 1.279 15 C -0.148 4.148 16 C 0.106 3.894 17 N -0.610 5.610 18 C 0.516 3.484 19 O -0.592 6.592 20 C -0.119 4.119 21 C -0.113 4.113 22 C 0.103 3.897 23 N -0.504 5.504 24 C 0.417 3.583 25 O -0.434 6.434 26 N -0.345 5.345 27 N -0.346 5.346 28 C 0.418 3.582 29 O -0.436 6.436 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.379 0.621 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.433 0.567 46 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.657 -7.103 21.833 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.077 0.923 4 C 0.053 3.947 5 H 0.086 0.914 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.100 0.900 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.201 1.201 13 H -0.228 1.228 14 H -0.205 1.205 15 C -0.188 4.188 16 C -0.016 4.016 17 N -0.344 5.344 18 C 0.307 3.693 19 O -0.473 6.473 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.018 4.018 23 N -0.224 5.224 24 C 0.106 3.894 25 O -0.237 6.237 26 N -0.189 5.189 27 N -0.191 5.191 28 C 0.107 3.893 29 O -0.240 6.240 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.215 0.785 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.296 0.704 46 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 12.934 -6.006 23.258 27.282 hybrid contribution -0.499 -0.196 -2.721 2.773 sum 12.435 -6.203 20.537 24.797 Atomic orbital electron populations 1.21793 0.96174 1.01179 1.00924 1.21554 0.93954 0.95698 0.86043 0.92321 1.21424 0.91913 0.94587 0.86746 0.91395 1.42845 1.05074 1.87368 1.02243 1.19629 0.92846 1.40255 0.84305 0.90009 1.25571 0.95328 1.03906 1.02163 1.69815 0.99845 1.59341 1.33197 0.85212 0.76245 0.78272 0.80009 1.20060 1.22803 1.20530 1.23368 1.01394 0.98275 0.95800 1.22564 0.95198 0.88700 0.95107 1.48707 1.50227 1.30977 1.04451 1.21199 0.80110 0.84967 0.83037 1.90697 1.41043 1.31734 1.83873 1.21561 1.04364 1.00507 0.89400 1.21557 1.01013 0.99759 0.92839 1.22258 1.03253 0.99184 0.77102 1.47204 1.18853 1.35155 1.21204 1.21356 0.87636 0.91161 0.89238 1.84899 1.18427 1.45528 1.74866 1.78241 1.01709 1.20295 1.18670 1.78248 1.13752 1.10655 1.16440 1.21364 0.83692 0.95484 0.88770 1.84979 1.40437 1.22300 1.76267 0.93369 0.92879 0.92949 0.78513 0.94151 0.92701 0.89399 0.87283 0.88513 0.85616 0.84757 0.91969 0.93056 0.85482 0.85212 0.70400 0.70119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 7.93 71.98 0.57 -4.81 16 2 C 0.13 4.37 3.47 45.34 0.16 4.53 16 3 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 4 C 0.16 5.74 3.49 46.18 0.16 5.90 16 5 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 6 N -0.73 -34.61 4.94 -317.34 -1.57 -36.17 16 7 C -0.24 -12.43 9.96 84.03 0.84 -11.60 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 10 N -0.97 -58.19 13.06 21.65 0.28 -57.91 16 11 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 C -0.15 -3.95 6.77 31.98 0.22 -3.73 16 16 C 0.11 1.78 6.69 86.86 0.58 2.36 16 17 N -0.61 -14.77 3.08 -788.03 -2.43 -17.20 16 18 C 0.52 11.99 7.63 87.66 0.67 12.66 16 19 O -0.59 -19.77 14.89 -3.03 -0.05 -19.81 16 20 C -0.12 -1.13 4.71 29.85 0.14 -0.99 16 21 C -0.11 -1.29 4.83 30.59 0.15 -1.14 16 22 C 0.10 0.54 6.01 86.38 0.52 1.06 16 23 N -0.50 -6.65 2.76 -755.16 -2.08 -8.74 16 24 C 0.42 7.04 9.15 179.72 1.65 8.69 16 25 O -0.43 -4.47 13.58 -89.50 -1.22 -5.68 16 26 N -0.34 -8.53 12.72 -173.65 -2.21 -10.74 16 27 N -0.35 -8.64 12.72 -173.65 -2.21 -10.85 16 28 C 0.42 7.23 9.15 179.72 1.65 8.87 16 29 O -0.44 -4.89 13.58 -89.45 -1.21 -6.10 16 30 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 31 H 0.05 2.03 6.76 -2.39 -0.02 2.02 16 32 H 0.05 2.25 6.79 -2.39 -0.02 2.23 16 33 H 0.38 19.56 5.06 -92.71 -0.47 19.09 16 34 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.11 1.05 7.48 -2.39 -0.02 1.04 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.13 0.58 7.85 -2.39 -0.02 0.56 16 40 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 41 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 42 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 43 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.13 0.08 8.14 -2.38 -0.02 0.06 16 45 H 0.43 0.59 9.06 -74.06 -0.67 -0.08 16 46 H 0.44 -0.43 9.06 -74.06 -0.67 -1.10 16 Total: -1.00 -86.38 384.99 -3.67 -90.05 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -0.77 Total: 18.68 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.76 Total: 17.97 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -10.21 Total: -141.61 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -2.47 Total: -31.59 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -86.38 -3.67 -90.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734394292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.709 kcal (2) G-P(sol) polarization free energy of solvation -86.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds